ID:

dsi_18801

 Coordinate:

3l:15704234-15704383 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_15704384_15704550_+]; exon [3l_15704384_15704550_+]; intron [3l_15703735_15704383_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATCTGTTTAAGAAAATCTACACGATCTTTTTCTTGATACCTGAATGAAACACAACTAAAATACTCATAATTATTGCACTAATGTTTATAAGACTGTGTTTCTCTTTGGACTTTGAGTCCAAACCATTATGACAACATGATTCAAAGCTTACAGTGTCAAATCCGAAATGTTTATTGTATTCTTTATCATTGCTATATAGGAGCACTATCCTTCTATGGTTCCTCGGACGTGCAAGATGATATTCCTGGC
**************************************************..............(((((((....((((................)))).....((((((((...))))))))..)))))))....(((((..((((..(((((((................)))))))..)))))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M053
female body
 M023
head
 SRR553488
RT_0-2 hours eggs
..............................................................................................................................................................................................................TATCCTTCTATGGTTCCTCGGAC..................... 23 0 1 2.00 2 0 1 0 1 0 0 0
...................................................................................................TTCCCGTTGGACTTTGAATCC.................................................................................................................................. 21 3 2 1.50 3 0 3 0 0 0 0 0
..................................................................................................................................................TCTTCCAGTGTCAAGTCCGAAA.................................................................................. 22 3 2 1.00 2 0 0 2 0 0 0 0
.....................................................................................................................................................................................................................CTATGGTTCCTCGGACGTGCAAG.............. 23 0 1 1.00 1 0 0 0 0 1 0 0
.................................................................................................................................................................................................................CCTTCTATGGTTCCTCGGACGTGC................. 24 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCGGACGTGCAAGATGATATTCCT... 24 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TATGGTTCCTCGGACGTG.................. 18 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................CTTTGGACTTTGAATC................................................................................................................................... 16 1 11 0.18 2 2 0 0 0 0 0 0
.......................................................................................................CTTTGGACTTTGAATCC.................................................................................................................................. 17 1 8 0.13 1 1 0 0 0 0 0 0
........................................................................................................................................................................................TGTATTTGCTATATAGGAGC.............................................. 20 3 9 0.11 1 0 0 0 0 0 1 0
.......................................................................................ATAAGGCTGAGTTGCTCTT................................................................................................................................................ 19 3 20 0.10 2 0 0 0 0 0 0 2
........................................................................................................TTTGGACTTTGAATCC.................................................................................................................................. 16 1 15 0.07 1 1 0 0 0 0 0 0
.......................................................................................................CATTGGACTTTGAGT.................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0
......................................................................................GAAAAGACTGTGTTTCT................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

TTAGACAAATTCTTTTAGATGTGCTAGAAAAAGAACTATGGACTTACTTTGTGTTGATTTTATGAGTATTAATAACGTGATTACAAATATTCTGACACAAAGAGAAACCTGAAACTCAGGTTTGGTAATACTGTTGTACTAAGTTTCGAATGTCACAGTTTAGGCTTTACAAATAACATAAGAAATAGTAACGATATATCCTCGTGATAGGAAGATACCAAGGAGCCTGCACGTTCTACTATAAGGACCG
**************************************************..............(((((((....((((................)))).....((((((((...))))))))..)))))))....(((((..((((..(((((((................)))))))..)))))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body
......................................................................................................................................................TGTCACAGTTTAGGCTTTA................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0
.......................................GGACTTACTTTGTGTTGATTT.............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0
...................................................................ATTAATAACGTGATTA....................................................................................................................................................................... 16 0 4 0.75 3 3 0 0 0 0 0
..........................................................................................................................................CTAAGTTTCGAATGT................................................................................................. 15 0 2 0.50 1 0 0 0 1 0 0
....................................................................TTAATAACGTGATTA....................................................................................................................................................................... 15 0 4 0.25 1 1 0 0 0 0 0
..............................................................................................................................................GTTAGGAATGTCACAG............................................................................................ 16 2 20 0.15 3 0 0 0 3 0 0
............TTCTAGAAGTGCTAGATAAAGA........................................................................................................................................................................................................................ 22 3 7 0.14 1 1 0 0 0 0 0
.............................................................................................................................................AGTTAGGAATGTCACAG............................................................................................ 17 2 7 0.14 1 0 0 0 1 0 0
.......................................................................................................................................GTACGAAGTTTCGGATG.................................................................................................. 17 2 11 0.09 1 0 0 0 0 1 0
................................................................................................................ACGTTAGGTTTGGTAATACT...................................................................................................................... 20 3 16 0.06 1 0 0 0 0 1 0
....................................................................................................................CAGGTTTGGGAACACTAT.................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1
.............................................................................................................................................................................TGACAGAAGAAATAGTA............................................................ 17 2 20 0.05 1 1 0 0 0 0 0

Generated: 04/23/2015 at 06:25 PM