ID:

dsi_18776

 Coordinate:

3r:10176740-10176857 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_10176030_10176739_-]; exon [3r_10175814_10176739_-]; CDS [3r_10176858_10177418_-]; exon [3r_10176858_10177418_-]; intron [3r_10176740_10176857_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------##################################################
CGGTCATCAAAAGGAAGGCTACGGACTCTCTTGGAATCCCAACCTCAATGGTAAGTGCGTAGCTGTACCTAGTACTTATATATTTGCTGAGAGAAGAGCACTAGTCATTGCTACATCTAAAATGCATTACGATTTAACCATTAATGAACATCTTGATTGGCCTTACAGGCTATTTGCTGTCAGCCTCTGATGACCACACCATCTGCTTGTGGGACATC
**************************************************(((((.(((((((.((..(((((.(((.....(((....)))...))).)))))..)).)))))(((.......(((((............)))))........)))..)))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
..............AAGGCTACGGAATCTCTTGG........................................................................................................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0
....CATCAAAAGGAAGGCTACGGACT............................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0
...........AGGAAGGCTACGGACTCTCTTGGAA...................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................................................TGAAAGAACATCTTGATTCGCCT....................................................... 23 3 1 1.00 1 0 0 0 1 0 0 0
.....ATCAAAAGGAAGGCTACGGACT............................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
........AAAAGGAAGGCTACGGACT............................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................ATCGCTACATCTAAACT............................................................................................... 17 2 11 0.27 3 0 3 0 0 0 0 0
...................TACGGACTCTTTTGG........................................................................................................................................................................................ 15 1 4 0.25 1 0 1 0 0 0 0 0
........................................................GAGTAGCTGTCCTTAGTAC............................................................................................................................................... 19 3 5 0.20 1 1 0 0 0 0 0 0
...................................................................................................ACTAGTCATTGCGATA....................................................................................................... 16 2 20 0.10 2 0 0 0 1 0 0 1
.............................................................................................................................................TAATGAACATCTTCATTGG.......................................................... 19 1 12 0.08 1 0 0 0 0 0 1 0
..................................................................................................................................GATGCAACCATTAATGA....................................................................... 17 2 19 0.05 1 0 0 1 0 0 0 0
........AAAGGTAAGACTACGGACT............................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

GCCAGTAGTTTTCCTTCCGATGCCTGAGAGAACCTTAGGGTTGGAGTTACCATTCACGCATCGACATGGATCATGAATATATAAACGACTCTCTTCTCGTGATCAGTAACGATGTAGATTTTACGTAATGCTAAATTGGTAATTACTTGTAGAACTAACCGGAATGTCCGATAAACGACAGTCGGAGACTACTGGTGTGGTAGACGAACACCCTGTAG
**************************************************(((((.(((((((.((..(((((.(((.....(((....)))...))).)))))..)).)))))(((.......(((((............)))))........)))..)))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
................................................................................................TCGTGATCAGTAGCGAGGTAGGT................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
.................CGATGGCTGGGAGAACCAT...................................................................................................................................................................................... 19 3 3 0.33 1 0 1 0 0 0 0
......AGTCTTCCTTCCGTTGCCTT................................................................................................................................................................................................ 20 3 10 0.20 2 0 0 2 0 0 0
.....................................GGGTTGGTGTTAACATTCA.................................................................................................................................................................. 19 2 7 0.14 1 0 0 0 0 1 0
..................................TCAGGATTGGCGTTACCATT.................................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0
.......................................................................................TCTCTCTTCTAGTGATC.................................................................................................................. 17 2 9 0.11 1 0 0 0 1 0 0
...................................................................GGATCATGGATACATAA...................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 1
............................................................................................................................ATAATACGAAATTGGTAATT.......................................................................... 20 3 20 0.05 1 0 0 0 1 0 0

Generated: 04/24/2015 at 10:36 AM