ID:

dsi_18770

 Coordinate:

node_33578:2027-2194 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.8 -10.7 -10.5 -10.4

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron-

Sense Strand Reads

TTGGAAATGCTTCCTTCTGCTAATATACGCGTTCACTCTACGAGTAACGGGTATGAAAATTAGTTCGGGTACTTCACTACATTTTTAAAATGGTTTAAGGTATAAGTATTCCATACAAAAGTTATTTAATATCGCAAAAAAAACTCGCGATTCTGGGCTTTTATTTACATAATAGTTTAAGTTTTTAATTAATCGATATATCGATAAGAGATTTTTAAAATGCTATAAAAGTATTTTGGTTTTTTGAGTGTCCTATTGAGGAAACCAA
*****************************************************************************************************************........((......(((((....(((((((........((((((.((((....)))).))))))))))))).......))))).......))************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
............................................................................................................................................................................................................................................TGGTTTTTTGAGTGTCCTATTGAGGA...... 26 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................TTGGTTTTTTGAGTGTCCTATTGAGGA...... 27 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................TTAATCGATATATCGATAA............................................................. 19 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................TACAAAAGTTATTTAATATCGCAAAAAA............................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................CGCGATTCTGGGCTTTTATTT...................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
..................................ACTCTACGAGTGACAGGTATGAAAA................................................................................................................................................................................................................. 25 2 4 0.25 1 0 0 0 1 0 0
....................................TCTACGAGTGACGGGTATGAAAACTAA............................................................................................................................................................................................................. 27 3 8 0.25 2 1 0 0 0 1 0
..........................................................................................................................................................................................................GATAAGAGATTTTCAAAA................................................ 18 1 4 0.25 1 1 0 0 0 0 0
....................................TCTACGAGTGACGGGGATGAAAACTA.............................................................................................................................................................................................................. 26 3 6 0.17 1 0 0 0 0 1 0
....................................TCTACGAGTGACGGGTATGAAAACTA.............................................................................................................................................................................................................. 26 2 6 0.17 1 1 0 0 0 0 0
....................................TCTACGAGTGACAGGTATGAAAACTA.............................................................................................................................................................................................................. 26 3 6 0.17 1 0 0 0 1 0 0
......................................TACGAGTGACAGGTATGAAAACTA.............................................................................................................................................................................................................. 24 3 8 0.13 1 0 0 0 1 0 0
................................TCAGTCTACGAGTAACGGGTATTAAAAT................................................................................................................................................................................................................ 28 2 8 0.13 1 0 0 0 1 0 0
................................................................................................................................................TCGCGAGCCTGGGCTTT........................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 1
.........................................GATTAACGGGTCTGAAA.................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

AACCTTTACGAAGGAAGACGATTATATGCGCAAGTGAGATGCTCATTGCCCATACTTTTAATCAAGCCCATGAAGTGATGTAAAAATTTTACCAAATTCCATATTCATAAGGTATGTTTTCAATAAATTATAGCGTTTTTTTTGAGCGCTAAGACCCGAAAATAAATGTATTATCAAATTCAAAAATTAATTAGCTATATAGCTATTCTCTAAAAATTTTACGATATTTTCATAAAACCAAAAAACTCACAGGATAACTCCTTTGGTT
*************************************************************........((......(((((....(((((((........((((((.((((....)))).))))))))))))).......))))).......))***************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...............AGACGATTATATGCGCAAGTGAGATGCT................................................................................................................................................................................................................................. 28 0 1 6.00 6 6 0 0 0 0 0 0
.................ACGATTATATGCGCAAGTGAGATGCT................................................................................................................................................................................................................................. 26 0 1 3.00 3 2 0 1 0 0 0 0
...........................................CATTGCCCATACTTTTAAT.............................................................................................................................................................................................................. 19 0 1 2.00 2 0 2 0 0 0 0 0
.................................................................................AAAAATTTTACCAAATTCCATATTCAT................................................................................................................................................................ 27 0 1 2.00 2 0 2 0 0 0 0 0
.........................................................................................................................................................................................................................................AAAACCAAAAAACTCACAGGATAACT......... 26 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................GAGCGCTAAGACCCGAAAATAAATGT................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0
.....................TTATATGCGCAAGAGAGATGCTCAT.............................................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................CAAGCCCATGAAGTGATGTAAAAATT.................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0
................GACGATTATATGCGCAAGTGAGATGCT................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
.....................TTATATGCGCAAGTGAGATGCTCAT.............................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................AGGTATGTTTTCAATAAATTATAGCGTT................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0
............................................................ATCAAGCCCATGAAGTGATGTAAAAAT..................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0
...........................GCGCAAGTGAGATGCT................................................................................................................................................................................................................................. 16 0 1 1.00 1 0 0 0 1 0 0 0
.............................................................................ATGTAAAAATTTTACCAAATTCCATAT.................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................ATAAATGTATTATCAAATTCAAAAATT................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0
...............AGACGATTATATGCGCAAGTGAGATGCTC................................................................................................................................................................................................................................ 29 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................................AGCGCTAAGACCCGAAAATAAATGTAT................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................TCATAAGGCATGTTTTCCAT................................................................................................................................................ 20 2 1 1.00 1 0 0 0 0 1 0 0
................GACGATTATATGCGCAAGTGAGATGC.................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0
...............AGACGATTATATGCGCAAGTGAGAT.................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0
...............AGACGATTATATGCGCAAGTGAGATGC.................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
...................GATTATATGCGCAAGTGAGATGCT................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
.......................ATATGCGCAAGTGAGAT.................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 1 0 0 0
....................................AGATGCTCACTGCCCATACTT................................................................................................................................................................................................................... 21 1 2 0.50 1 0 0 0 0 1 0 0
..............................................................................................................GGTATGTTTTCAATA............................................................................................................................................... 15 0 8 0.25 2 0 0 1 0 0 1 0
........................CATGCGCCAGTGAGGTGCT................................................................................................................................................................................................................................. 19 3 7 0.14 1 0 0 0 0 0 0 1
............................................................................................................AAGGTATGTTTTCAATAT.............................................................................................................................................. 18 1 9 0.11 1 0 0 1 0 0 0 0
..............................................................CAGGCGCATGAATTGATG............................................................................................................................................................................................ 18 3 20 0.10 2 0 0 0 0 0 0 2
..........................................................................................................................................................................................................................................................AGAATAACTCTTTTGGTT 18 2 14 0.07 1 0 0 0 0 0 1 0
...................................................................................................................................................................................................................AAATATTTTGCGAAATTTTCAT................................... 22 3 14 0.07 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_33578:1977-2244 + dsi_18770 TTGGAAATGCTTCCTTCTGC--------------------------------TAATATACGCGTTCACTCTACG--------------AGTAACGGGTATGAAAAT-----TAGTTCGGGTACTTC---------------------------------------------------------------------------------ACTACATT--------------TTTAAAATGG-------------------------------------------------------------------------------------------------------------TTTAAGGTATAAGTATTCCATACAAAAG-------------------------------TTATTT----------A--------------------------------------------------------------------------------------ATATCGCAA-AAAA--------------------------------------------------------------------------------------------------AACTCGCG-------ATTCTGGGCTTTTATT--TACA--TAATAGTTTAA--------GTTTTTA---ATTAA--------------------------------TCGATATATCGATAAGAGATTTTTAAAATGCTATAAAAGTATTTTGGT---------------------TTTTTGA-----------GT-GTCCTATTGAGGAAACCAA
droSec2 scaffold_109:10652-10944 - TCGGAAACGGTTCCTATTACCTGTTAAATACTTTTC-------AAG-GAACCTAATATACGCGTTCACTCTACG--------------AGTAAAGGGTATGAAAAT-----TAGTTCGGGTACTTC---------------------------------------------------------------------------------ACTGCTTT--------------TTTAAAATGG-------------------------------------------------------------------------------------------------------------TTTAAGGTATAAGTATTCCATACAAAAG-------------------------------TTATTT----------G--------------------------------------------------------------------------------------ATATCGCAAAAAAA--------------------------------------------------------------------------------------------------AACTCGCG-------ATTCTGGGCTTTTATT--TACA--TATAAGTTTAA--------ATTTTTA---ATTAA--------------------------------TCGATATATCGATAAGAGATTTTTAAAATGCTATAAAAGTATTTTGGT---------------------TTTTTGA-----------GT-GTCCTATTGAGGAAACCAA
dm3 chrXHet:84357-84652 + TCGGTAACGCTTCCTTTTACCTGTTAAATACTTTTC-------AAG-GAATTTAATATACGCCTCCACCATACG--------------A-----GGGCATGAAAAT-----CATTTTTGGTACTTC---------------------------------------------------------------------------------ACAACATT--------------TTTAAAATTG-------------------------------------------------------------------------------------------------------------TAAAAGGCTTAAAGATTCCATACAACAG-------------------------------TTATTT----------A--------------------------------------------------------------------------------------ATATCG--ATAGAA--------------------------------------------------------------------------------------------------AATTCGCG-------ATTCTGGACTTTTATT--TAGA--A------------------GTTTTTA---CCTTA--------------------------------TCGATATATCGATAGAAGATATTTAAAATGCTATAAAAGTATTTTGGTTCTTCCAATGTCTAAC-GCTTTTTTTGA-----------GT-GTCCTGTTGAGGAAACCAA
droEre2 scaffold_4690:18746762-18747048 + TCGGAAACGATTCCTTCTACCAGTTACATACCTTTC-------AAC-GAGTCTAGTATACCATTTTACTCTACG--------------AGTAACGGATTTAAA-AT-----TAGTTGGGGTACTCA---------------------------------------------------------------------------------A------T--------------GTTCAAATGT-------------------------------------------------------------------------------------------------------------TTGA--------AGTTTCCATACAAAAG-------------------------------GATTTT----------T--------------------------------------------------------------------------------------ATATCG--ATAGAA--------------------------------------------------------------------------------------------------AACTCGCGTAAGTGGATTCTGTGCTCTTATG--TAGT--T------------------ATTTTGG---CCTTA--------------------------------TCAATATATCGAT-------ATTTAAAATAATGGAAAACAAATTTGTTTATGTCAATGACCAATGCCTTTTTTTGA-----------TT-GTCCTATTGGGAAAAGCAA
droYak3 chrXh:110032-110329 - TCGGAAACACTTTCTTCTACCTGTTAAATACTTTCG-------GTA-AA---AAGTATACCCTTTCACTCAACA--------------TGTAACTGGTATAAAAAT-----TAGTTGGGGTACTCA---------------------------------------------------------------------------------ACTGGGTT------------TATTTAAAATGT-------------------------------------------------------------------------------------------------------------TTGACGGCTTACAGTTTCCATACAAAAG-------------------------------TTATCG----------A--------------------------------------------------------------------------------------ATATCGAA--AGAA--------------------------------------------------------------------------------------------------AACTCGCGTTAGTAAAATCTGTGT-TTAATG--TAGA--G------------------GTTTT--------CT--------------------------------TCGATGTATCGGATAGAGATATTTAAAATGAGAGAAAAGAATTTTGGTGCTACTAATCA---TT-GTAGTTTTTGA-----------GT-GTTCTATTGAGAAAACCAA
droEug1 scf7180000409551:77093-77368 - ----AAACGCTTTCTTCTACTTGTTACATACTTTTC-------AAC-GAATCTAATATACCTTTTTACTCTACG--------------AATAACAGGTATAAAAAT-----TGTTGTGAGTGTGTG-----------------------------------TAATATCATTT--------TAA---GTTTGGGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTTTTTAAAAAAG-------------------------------AAGGTG----------T--------------------------------------------------------------------------------------ACATTGCAATACAAAATTCAAAATTGTTTCTTCAAAACGGTTTCTATTTTTATTGCAGGACAAATTTG---------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAAAAAAGTGTTTCCTAAAATTC-----AATTCTTTTGTT---------------------TTTTTTA-----------TT-GTGCGATAAAAAAAAACAA
droBia1 scf7180000301797:8256-8536 + TCGAAAACATTTCTTTTTACCTGTTACATATTTTCT-------GAC-GAATCTAGTATACCCTTTTACTCTACG--------------AGTAACGGCTGA---AAT-----GCGTTTATAAACGTCTTGTTGT---------------CTTGTTGT---------------------------------------------------------------------------------CATACCATCAGTATTTAAATAAAATTTGGGGAAAACAAGAAATTTTTCAACAATAGATTTTGATTTAGATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------CATCAGATATTAATTAAAGAATCCGATGTCGA---------------------AAAAACAT-------------------------------------------------------------------------------------------------ATTTTTTA-------AAAAATAATG---------------------------------------------------------------------------------------------------------------------AATATTACGAA---------------------TTTGTAA-----------GA-ATGCCATTCGGACTAAAAA
droTak1 scf7180000414509:58224-58450 - TCGGAAACGCTTCCTTCTAGCTGTTACATACTTTAG-------GA----------------------CTCTACG--------------AGTAACGGGTATAAAAAT-----AGCATT-T-TAATCA--------AT----------------------------------------AGCTTAG---GAAAAGAGGC--------TGATGAAGGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAT----------A--------------------------------------------------------------------------------------AAATCGCAA--------------------TCTTTTGATAA----------------------AAATAATA-------------------------------------GATAAGGC----A-----------TGGAC-TTTATT--T--------------------------------------------------------------------------ACATTTCAATTTCAAAAGCTTAAAATATTTTATAAG--------------------------ATATTTTTAGA-----------GA-ACATTTCTAAAGAAA-CCA
droEle1 scf7180000490651:59335-59563 + TCGAAAATGTTTTCTTGACT---------------------------GAAATTTTATTACC------CTCTGCAAGGG----------TATAAGAAGTTATAATAT-----TGTTTTGTGCATTTT---------------------------------------------------------------------------------TCCG-------------------------------------------------------------------------------------------------------------------------------------ATTGTTTA--------TATAGCTATATGATAA-------------------------------AGTCTT----------CATATCAATAAAT------------------------------------------------------------TTGTTTGTTTTTAAATTTAATAA--AAA------ATCTTAAATTTTTAATAAAT----------------------AATTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAAATAAAATGAAATTA--AACGAAAATTTGT---------------------TTT---------------------TTGTTTATTAATCAAA
droRho1 scf7180000780226:261846-262117 - TCGGAAACGCTTCCTTCTAGCTGTTATATACTTTTG-------CAC-GAATACAATATACCCTTTTACTCTACG--------------AGTAACGGGTATAAAAAT-----ACAAA------CATTTATAATTAATTATTAAAATATAATTGCGTA-TAGA-------------TTAAATGTA---GTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------ATATTACAA--AAA------AAATCGTTTTTTTAAGATAG----------------------AATTAGTATTATAT-------------------------------A----ATATGACG-------TCTAAATATAAATTGT--T-------------------AC---ATTTTTA---T------------------------------------TTTATTTATA---------------------------A--------------------ATACTA-ATATTTGTTGT-----------GT-GTTTTTTTG-GTAACACAA
droFic1 scf7180000453835:229121-229383 + TCTGAGGTGTCTCCTTCACTGCGTTGCAAACTTCTG-------ACT-GAAATTATAATACCCTTTTGCTCTGCA--------------A-----GGGTATAAAAAT-----AAATATTG-TGTTGC------------------------------------------------TCAGGTTTT---GTTCAGGTGG--------TAATTACTGAAGTAAGAAAGCATT---------------------------------------A-----------------------------------TTC------------------------TTTAGGACTA--------AC---------------TT------------------------------------------------AGAATGCA-------------AATCTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCATT--TACA--TTATAACGTAA--------ATTGTTA---AATAT--------------------------------TTTATTATATTATATTGGATATATAATATATTA----AATATATTTTA---------------------TCTTTAA-----------TT-TTTCTAT------------
droKik1 scf7180000302386:238467-238747 + TCGCAAATGATTGCTTCACTTAA----------------------T-AAAATCATAATTCCCT------TCAAG--AA------G---ACCGAAAATATTAAATAT-----TTTTAAAAGGATA---------------------------------------------------------------------------------------------------TT----T-----------------------------------TCC-----------------------------------ATATTTTCT---------------------ATGATAA--------TTTTTGGAAAA----------ACCAAAGTTTAAAAATATCATAACTTAGCCAAAAAAGC------ATCAAAATCA-------------ATTCT-------------------------------------------------------GTAAGCATTTCTATGCTAGTTTT------------------------------------------------------------------------------------------------------------------------------TTCTAGCTTA-AGAAA-----------TCTGCATC---TT----------------------------------------------------------AAATTTTTAATTTAAAAAAATCGAATTTTAGG-----------------CCGATTTTTGAGAATTTTAATGAT-GTAACCCC-------TTAT
droAna3 scaffold_13248:400166-400437 - TCGGAGATATCTCCTTCACTGCGTTGCACACTTTTG-------ACC-AAAATTATAATACCCT------CTGCA--------------A-----GGGTATAAAAAA-----CAAACCAGGGGCTGG---------------------------------------------------------------------------------ATTAGTTT--------------AAAAATATGT--------------------------TTTAAAATTTGATAATTATTTAAAACATATCTTGAACTATATTTT-----------------TAAAA--------------------------------------------------------------------------------------------------------ATTCT-------------------------------------------------------GTATTTATTTCTGTCTTAAATTT--ATT------TTCTGTATTTCTTTATAGTT----------------------TATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAATTATATAAAAATTAAAAAAAAATACTCGT---------------------CTGTTAG-----------TT-TTTTTATTTAAA----AAA
droBip1 scf7180000396580:1017115-1017398 + TCGGAGATGTCTCCTTCACTGCGTTGCACACTTTTG-------GAC-AAAATTATAATACCCT------CTGCA--------------A-----GGGTATAAAAAT-----AGGTTTACAAAATTCTTCCATT---------------GATGCGTA-TACGCAATATTTATTGG--------TAAAT-------------------------T----------TT----T-----------------------------------TTC-----------------------------------AAATTTTTTTAAATGT-----------------------------TT----------GTAATGTATCC---------------------------------------------------T-------------TTCATTTATGCATTTAAATTAAAATTTTCGATAAAAACTAAATCTTTTACCACATTTAAA---------------------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATT---------------------TTAATTTATTTAATAATATAAATTTTTTTTTAA-----------CA-TTTCTTTTCTTCAAAATTA
dp5 XL_group1a:7612630-7612873 - TCGGAAACGATTCCTTCTGGACGTTACACACATCCACTTTTACCAC-AAATCTAATATACCCCAATACTCATTT------------TGAGTATCGGGTATAATTATGAAATACAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAATCCG-------ATTTTTAT--------AGTTGACTTCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAGC------------------------------------------------CTGCATT---TTTAATTTTT-A--TAGCAAAAAAAAAAATTTTAATTTTAAAAATTAATACAT-----------------------------------AAATGCTACAAATTACAAAA-ATATTTATTCT---------GTAT-GCAATTTTA-------AAC
droPer2 scaffold_2:324710-325027 + TCGGAAACGCTTCTTTCTGGATGTTACACACATCCACTTTCCGTAA-AAATCTAATATATCCTAATACTTCTAT----ACTCATTAGGAGTATCGGGTATAAAAAT-----G--------CACATCTCGTAT---------------------------------------------------------------------------------TC--------------TTTTGAATGG-------------------------------------------------------------------------------------------------------------CACAATGCGT--GTATCCACAAAAACCG-------------------------------TAAACA----------A--------------------------------------------------------------------------------------TCATCGCAATAAAA--------------------------------------------------------------------------------------------------ATTTCACG-------AT---GTACTTTAACTTT-AG--------------TCAGCATG---ATACAATTTTGATTTATAATCAAACAAAATTATAATCTTTTTAATGGATCCACTGATC------CACTCACCTGTGATACGAGAGCTTTGGT---------------------CTCAGGA-----------GTAGTGCTATCAAGGAA---AA
droWil2 scf2_1100000004762:5914448-5914710 - TCGGAAACATCTCCTTCTGGGCGTAACAAACATTTG-------TACCCAAATTTCATTAC----------------------------------TGTTATCAAAAT-----TATTATTGTTAATTC---------------------------------------------------------------------------------AAA---------------------------------------------------------------------------------------------------------------------TCAAATGCCTTTTTCGAT----------------------------------------------------------------------------------------------------------------------------------------------------TGG----------------------------------------------------------------------------CGCTTATAATTT--TATTATTATTTTATCTTATTTATAACTGCAG-AAAAGGCCAG------AAAAGTTATTGT-AATGTT--TAAA--T------------------ATTTA--------TA--------------------------------CCCAAATATTTCTAGGAAATTCCTAGAATGTATTTAATGGATATTGCT---------------------TTTTTAA-----------GC-ACACTCTAAATGTGACAAA
droVir3 scaffold_12799:463211-463450 - TCGGAGATGCTTCCTTCTGCCTGTTACATACATTTGGATTTTGCAC-AGATACAATATACCCTTATACCCATTT--------TTAATGGGTTCAGGGCATAATTATGATA------------TATA--GTAT----------------TTAGTAACGATGTCAGCACCATTTGG--------TAT-T-------------------------------------------------------------------------------------------------------------TTTGTTTAGATTCTTTTAAATGTTATTTGAATTAAATGACTATCGATAT----------------------------------------------------------------------------------------------------------------------------------------------------TGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATCGA-------------------TGGTTTT-AACATTACACT------GTTATCA-----------GT-TTTCTGTCGAGT----AAA
droMoj3 scaffold_6308:544387-544642 - TCTGCCACGCCTCCTTCTCCCTGTTACATACATTTC-------AAC-AAAACCATTATACCCTGATTTCCCATT-------GAAAATGGGTTCAGGGTATAAAAAA-----AGT--------------------------------------------------------------------G---GAAAAAAAGT--------TGAA-------AAAAAAAAACTTC---------------------------------------A-----------------------------------ATA------------------------TTAATGTTAA--------TC-------------------------------------------------------------------------A-----------------------------------------------------------------------------------------TTGTAAAAACAA-------------------------------------------------------------------------------------------------ATTCGACG-------AATCATAATTAATATA--CACA--AATTTCTAATC--------ATATTTA---TTTGA--------------------------------TTTATAATAATATATGAAAATTCTAGCTCGATTGAAAAGTAATTTAGG---------------------TTTTCG----------------------------------
droGri2 scaffold_14906:9289332-9289538 + TCGAAGATGCTTCCTTTTGCCTGTTACAAGCATTTG-------CAG-AAATTCATTATACCCTTTCAACATATT--------TCAATGGGTTCAGTGCATGATAACGGTG----------------------------------------------------------------------------GACAAAAGTTTTAATATGCG-GATAGCTT------------TAA-------------------------------------------------------------------------------------------------TTAAATATGTTTT--------TC----ACTCGACGAACCCAAACAGC---------------------------------------GACAA-------------------------------------------------------------------------------------------------------GAA--------------------------------------------------------------------------------------------------A---------------------ATA------------------------------------------------------------------------------------------------AGAATTACAAAACTGTGTGTTTGTATTTCGGT---------------------TTT-------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTGGAAATGCTTCCTTCTGC--------------------------------TAATATACGCGTTCACTCTACG--------------AGTAACGGGTATGAAAAT-----TAGTTCGGGTACTTC---------------------------------------------------------------------------------ACTACATT--------------TTTAAAATGG-------------------------------------------------------------------------------------------------------------TTTAAGGTATAAGTATTCCATACAAAAG-------------------------------TTATTT----------A--------------------------------------------------------------------------------------ATATCGCAA-AAAA--------------------------------------------------------------------------------------------------AACTCGCG-------ATTCTGGGCTTTTATT--TACA--TAATAGTTTAA--------GTTTTTA---ATTAA--------------------------------TCGATATATCGATAAGAGATTTTTAAAATGCTATAAAAGTATTTTGGT---------------------TTTTTGA-----------GT-GTCCTATTGAGGAAACCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGT---------------------TTTTTGA-----------GT-GTCCTATTGAGGA......2611.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGT---------------------TTTTTGA-----------GT-GTCCTATTGAGGA......2711.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA--------------------------------TCGATATATCGATAA..............................................................................................1911.00100001000000000000
................................................................................................................................................................................................................................................................................................................................................................................TACAAAAG-------------------------------TTATTT----------A--------------------------------------------------------------------------------------ATATCGCAA-AAAA--------------------------------------------------------------------------------------------------......................................................................................................................................................................................................................2811.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCG-------ATTCTGGGCTTTTATT--T....................................................................................................................................................................................2111.00100000000000001000
droSec2
TCGGAAACGGTTCCTATTACCTGTTAAATACTTTTC-------AAG-GAACCTAATATACGCGTTCACTCTACG--------------AGTAAAGGGTATGAAAAT-----TAGTTCGGGTACTTC---------------------------------------------------------------------------------ACTGCTTT--------------TTTAAAATGG-------------------------------------------------------------------------------------------------------------TTTAAGGTATAAGTATTCCATACAAAAG-------------------------------TTATTT----------G--------------------------------------------------------------------------------------ATATCGCAAAAAAA--------------------------------------------------------------------------------------------------AACTCGCG-------ATTCTGGGCTTTTATT--TACA--TATAAGTTTAA--------ATTTTTA---ATTAA--------------------------------TCGATATATCGATAAGAGATTTTTAAAATGCTATAAAAGTATTTTGGT---------------------TTTTTGA-----------GT-GTCCTATTGAGGAAACCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TCGGTAACGCTTCCTTTTACCTGTTAAATACTTTTC-------AAG-GAATTTAATATACGCCTCCACCATACG--------------A-----GGGCATGAAAAT-----CATTTTTGGTACTTC---------------------------------------------------------------------------------ACAACATT--------------TTTAAAATTG-------------------------------------------------------------------------------------------------------------TAAAAGGCTTAAAGATTCCATACAACAG-------------------------------TTATTT----------A--------------------------------------------------------------------------------------ATATCG--ATAGAA--------------------------------------------------------------------------------------------------AATTCGCG-------ATTCTGGACTTTTATT--TAGA--A------------------GTTTTTA---CCTTA--------------------------------TCGATATATCGATAGAAGATATTTAAAATGCTATAAAAGTATTTTGGTTCTTCCAATGTCTAAC-GCTTTTTTTGA-----------GT-GTCCTGTTGAGGAAACCAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTCTTCCAATGTCTAAC-............................................2114.0040000000000000000000000000000000000000000000000000000000001120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TTTGGTACTTC---------------------------------------------------------------------------------ACAACATT--------------TTTAAAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................C-------AAG-GAATTTAATATACGCCTCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TTAAAGATTCCATACAACAG-------------------------------T............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAA--------------------------------------------------------------------------------------------------AATTCGCG-------ATTCTGGACTTT...........................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--ATAGAA--------------------------------------------------------------------------------------------------AATTCGCG-------ATTCTGGACTTT...........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TACG--------------A-----GGGCATGAAAAT-----CATTTTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCCAATGTCTAAC-GCTTTTTT....................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCGGAAACGATTCCTTCTACCAGTTACATACCTTTC-------AAC-GAGTCTAGTATACCATTTTACTCTACG--------------AGTAACGGATTTAAA-AT-----TAGTTGGGGTACTCA---------------------------------------------------------------------------------A------T--------------GTTCAAATGT-------------------------------------------------------------------------------------------------------------TTGA--------AGTTTCCATACAAAAG-------------------------------GATTTT----------T--------------------------------------------------------------------------------------ATATCG--ATAGAA--------------------------------------------------------------------------------------------------AACTCGCGTAAGTGGATTCTGTGCTCTTATG--TAGT--T------------------ATTTTGG---CCTTA--------------------------------TCAATATATCGAT-------ATTTAAAATAATGGAAAACAAATTTGTTTATGTCAATGACCAATGCCTTTTTTTGA-----------TT-GTCCTATTGGGAAAAGCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATG--TAGT--T------------------ATTTTGG---CCTTA--------------------------------TCAATA.......................................................................................................2711.0011000000
droYak3
TCGGAAACACTTTCTTCTACCTGTTAAATACTTTCG-------GTA-AA---AAGTATACCCTTTCACTCAACA--------------TGTAACTGGTATAAAAAT-----TAGTTGGGGTACTCA---------------------------------------------------------------------------------ACTGGGTT------------TATTTAAAATGT-------------------------------------------------------------------------------------------------------------TTGACGGCTTACAGTTTCCATACAAAAG-------------------------------TTATCG----------A--------------------------------------------------------------------------------------ATATCGAA--AGAA--------------------------------------------------------------------------------------------------AACTCGCGTTAGTAAAATCTGTGT-TTAATG--TAGA--G------------------GTTTT--------CT--------------------------------TCGATGTATCGGATAGAGATATTTAAAATGAGAGAAAAGAATTTTGGTGCTACTAATCA---TT-GTAGTTTTTGA-----------GT-GTTCTATTGAGAAAACCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
----AAACGCTTTCTTCTACTTGTTACATACTTTTC-------AAC-GAATCTAATATACCTTTTTACTCTACG--------------AATAACAGGTATAAAAAT-----TGTTGTGAGTGTGTG-----------------------------------TAATATCATTT--------TAA---GTTTGGGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTTTTTAAAAAAG-------------------------------AAGGTG----------T--------------------------------------------------------------------------------------ACATTGCAATACAAAATTCAAAATTGTTTCTTCAAAACGGTTTCTATTTTTATTGCAGGACAAATTTG---------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAAAAAAGTGTTTCCTAAAATTC-----AATTCTTTTGTT---------------------TTTTTTA-----------TT-GTGCGATAAAAAAAAACAASizeHit CountTotal NormTotal
No Reads
droBia1
TCGAAAACATTTCTTTTTACCTGTTACATATTTTCT-------GAC-GAATCTAGTATACCCTTTTACTCTACG--------------AGTAACGGCTGA---AAT-----GCGTTTATAAACGTCTTGTTGT---------------CTTGTTGT---------------------------------------------------------------------------------CATACCATCAGTATTTAAATAAAATTTGGGGAAAACAAGAAATTTTTCAACAATAGATTTTGATTTAGATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------CATCAGATATTAATTAAAGAATCCGATGTCGA---------------------AAAAACAT-------------------------------------------------------------------------------------------------ATTTTTTA-------AAAAATAATG---------------------------------------------------------------------------------------------------------------------AATATTACGAA---------------------TTTGTAA-----------GA-ATGCCATTCGGACTAAAAASizeHit CountTotal NormTotal
No Reads
droTak1
TCGGAAACGCTTCCTTCTAGCTGTTACATACTTTAG-------GA----------------------CTCTACG--------------AGTAACGGGTATAAAAAT-----AGCATT-T-TAATCA--------AT----------------------------------------AGCTTAG---GAAAAGAGGC--------TGATGAAGGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAT----------A--------------------------------------------------------------------------------------AAATCGCAA--------------------TCTTTTGATAA----------------------AAATAATA-------------------------------------GATAAGGC----A-----------TGGAC-TTTATT--T--------------------------------------------------------------------------ACATTTCAATTTCAAAAGCTTAAAATATTTTATAAG--------------------------ATATTTTTAGA-----------GA-ACATTTCTAAAGAAA-CCASizeHit CountTotal NormTotal
No Reads
droEle1
TCGAAAATGTTTTCTTGACT---------------------------GAAATTTTATTACC------CTCTGCAAGGG----------TATAAGAAGTTATAATAT-----TGTTTTGTGCATTTT---------------------------------------------------------------------------------TCCG-------------------------------------------------------------------------------------------------------------------------------------ATTGTTTA--------TATAGCTATATGATAA-------------------------------AGTCTT----------CATATCAATAAAT------------------------------------------------------------TTGTTTGTTTTTAAATTTAATAA--AAA------ATCTTAAATTTTTAATAAAT----------------------AATTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAAATAAAATGAAATTA--AACGAAAATTTGT---------------------TTT---------------------TTGTTTATTAATCAAASizeHit CountTotal NormTotal
No Reads
droRho1
TCGGAAACGCTTCCTTCTAGCTGTTATATACTTTTG-------CAC-GAATACAATATACCCTTTTACTCTACG--------------AGTAACGGGTATAAAAAT-----ACAAA------CATTTATAATTAATTATTAAAATATAATTGCGTA-TAGA-------------TTAAATGTA---GTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------ATATTACAA--AAA------AAATCGTTTTTTTAAGATAG----------------------AATTAGTATTATAT-------------------------------A----ATATGACG-------TCTAAATATAAATTGT--T-------------------AC---ATTTTTA---T------------------------------------TTTATTTATA---------------------------A--------------------ATACTA-ATATTTGTTGT-----------GT-GTTTTTTTG-GTAACACAASizeHit CountTotal NormTotal
No Reads
droFic1
TCTGAGGTGTCTCCTTCACTGCGTTGCAAACTTCTG-------ACT-GAAATTATAATACCCTTTTGCTCTGCA--------------A-----GGGTATAAAAAT-----AAATATTG-TGTTGC------------------------------------------------TCAGGTTTT---GTTCAGGTGG--------TAATTACTGAAGTAAGAAAGCATT---------------------------------------A-----------------------------------TTC------------------------TTTAGGACTA--------AC---------------TT------------------------------------------------AGAATGCA-------------AATCTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCATT--TACA--TTATAACGTAA--------ATTGTTA---AATAT--------------------------------TTTATTATATTATATTGGATATATAATATATTA----AATATATTTTA---------------------TCTTTAA-----------TT-TTTCTAT------------SizeHit CountTotal NormTotal
No Reads
droKik1
TCGCAAATGATTGCTTCACTTAA----------------------T-AAAATCATAATTCCCT------TCAAG--AA------G---ACCGAAAATATTAAATAT-----TTTTAAAAGGATA---------------------------------------------------------------------------------------------------TT----T-----------------------------------TCC-----------------------------------ATATTTTCT---------------------ATGATAA--------TTTTTGGAAAA----------ACCAAAGTTTAAAAATATCATAACTTAGCCAAAAAAGC------ATCAAAATCA-------------ATTCT-------------------------------------------------------GTAAGCATTTCTATGCTAGTTTT------------------------------------------------------------------------------------------------------------------------------TTCTAGCTTA-AGAAA-----------TCTGCATC---TT----------------------------------------------------------AAATTTTTAATTTAAAAAAATCGAATTTTAGG-----------------CCGATTTTTGAGAATTTTAATGAT-GTAACCCC-------TTATSizeHit CountTotal NormTotal
No Reads
droAna3
TCGGAGATATCTCCTTCACTGCGTTGCACACTTTTG-------ACC-AAAATTATAATACCCT------CTGCA--------------A-----GGGTATAAAAAA-----CAAACCAGGGGCTGG---------------------------------------------------------------------------------ATTAGTTT--------------AAAAATATGT--------------------------TTTAAAATTTGATAATTATTTAAAACATATCTTGAACTATATTTT-----------------TAAAA--------------------------------------------------------------------------------------------------------ATTCT-------------------------------------------------------GTATTTATTTCTGTCTTAAATTT--ATT------TTCTGTATTTCTTTATAGTT----------------------TATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAATTATATAAAAATTAAAAAAAAATACTCGT---------------------CTGTTAG-----------TT-TTTTTATTTAAA----AAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTT--ATT------TTCTGTATTT........................................................................................................................................................................................................................................................................................................1920.501010000
................................TTTG-------ACC-AAAATTATAATACCCT------CTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.153300000
...GAGATATCTCCTTCACTGCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.......TATCTCCTTCACTGCGTTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
droBip1
TCGGAGATGTCTCCTTCACTGCGTTGCACACTTTTG-------GAC-AAAATTATAATACCCT------CTGCA--------------A-----GGGTATAAAAAT-----AGGTTTACAAAATTCTTCCATT---------------GATGCGTA-TACGCAATATTTATTGG--------TAAAT-------------------------T----------TT----T-----------------------------------TTC-----------------------------------AAATTTTTTTAAATGT-----------------------------TT----------GTAATGTATCC---------------------------------------------------T-------------TTCATTTATGCATTTAAATTAAAATTTTCGATAAAAACTAAATCTTTTACCACATTTAAA---------------------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATT---------------------TTAATTTATTTAATAATATAAATTTTTTTTTAA-----------CA-TTTCTTTTCTTCAAAATTASizeHit CountTotal NormTotal
No Reads
dp5
TCGGAAACGATTCCTTCTGGACGTTACACACATCCACTTTTACCAC-AAATCTAATATACCCCAATACTCATTT------------TGAGTATCGGGTATAATTATGAAATACAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAATCCG-------ATTTTTAT--------AGTTGACTTCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAGC------------------------------------------------CTGCATT---TTTAATTTTT-A--TAGCAAAAAAAAAAATTTTAATTTTAAAAATTAATACAT-----------------------------------AAATGCTACAAATTACAAAA-ATATTTATTCT---------GTAT-GCAATTTTA-------AACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
TCGGAAACGATTCCTTCTGGACGTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26202.254500000004500
.......CGATTCCTTCTGGACGTTACACACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.4590000000900
.......................................TTACCAC-AAATCTAATATACCCCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.2040000400000
.........ATTCCTTCTGGACGTTACAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000003000
TCGGAAACGATTCCTTCTGGACGTTACAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.1530000000300
.......................................TTACCAC-AAATCTAATATACCCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000200000
TCGGAAACGATTCCTTCTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020200000000
.......CGATTCCTTCTGGACGTTACAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000200
.........................................................................T------------TGAGTATCGGGTATAATTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.1010100000000
TCGGAAACGATTCCTTCTGGACGTTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0511000000000
..........................CACACATCCACTTTTACCAC-AAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
..........................CACACATCCACTTTTACCAC-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000001000
.....AACGATTCCTTCTGGACGTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
.................................................................TACTCATTT------------TGAGTATCGGGTATAATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100000000
.............CTTCTGGACGTTACACACATCCACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
........................TACACACATCCACTTTTACCAC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
...............................ATCCACTTTTACCAC-AAATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
..................................................TCTAATATACCCCAATAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000100000
droPer2
TCGGAAACGCTTCTTTCTGGATGTTACACACATCCACTTTCCGTAA-AAATCTAATATATCCTAATACTTCTAT----ACTCATTAGGAGTATCGGGTATAAAAAT-----G--------CACATCTCGTAT---------------------------------------------------------------------------------TC--------------TTTTGAATGG-------------------------------------------------------------------------------------------------------------CACAATGCGT--GTATCCACAAAAACCG-------------------------------TAAACA----------A--------------------------------------------------------------------------------------TCATCGCAATAAAA--------------------------------------------------------------------------------------------------ATTTCACG-------AT---GTACTTTAACTTT-AG--------------TCAGCATG---ATACAATTTTGATTTATAATCAAACAAAATTATAATCTTTTTAATGGATCCACTGATC------CACTCACCTGTGATACGAGAGCTTTGGT---------------------CTCAGGA-----------GTAGTGCTATCAAGGAA---AASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGA-----------GTAGTGCTATCAAGGAA---A.2411.001000001
droWil2
TCGGAAACATCTCCTTCTGGGCGTAACAAACATTTG-------TACCCAAATTTCATTAC----------------------------------TGTTATCAAAAT-----TATTATTGTTAATTC---------------------------------------------------------------------------------AAA---------------------------------------------------------------------------------------------------------------------TCAAATGCCTTTTTCGAT----------------------------------------------------------------------------------------------------------------------------------------------------TGG----------------------------------------------------------------------------CGCTTATAATTT--TATTATTATTTTATCTTATTTATAACTGCAG-AAAAGGCCAG------AAAAGTTATTGT-AATGTT--TAAA--T------------------ATTTA--------TA--------------------------------CCCAAATATTTCTAGGAAATTCCTAGAATGTATTTAATGGATATTGCT---------------------TTTTTAA-----------GC-ACACTCTAAATGTGACAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................TCGAT----------------------------------------------------------------------------------------------------------------------------------------------------TGG----------------------------------------------------------------------------CGCTTATAATTT--TATTAT....................................................................................................................................................................................................................................................2611.00100010
droVir3
TCGGAGATGCTTCCTTCTGCCTGTTACATACATTTGGATTTTGCAC-AGATACAATATACCCTTATACCCATTT--------TTAATGGGTTCAGGGCATAATTATGATA------------TATA--GTAT----------------TTAGTAACGATGTCAGCACCATTTGG--------TAT-T-------------------------------------------------------------------------------------------------------------TTTGTTTAGATTCTTTTAAATGTTATTTGAATTAAATGACTATCGATAT----------------------------------------------------------------------------------------------------------------------------------------------------TGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATCGA-------------------TGGTTTT-AACATTACACT------GTTATCA-----------GT-TTTCTGTCGAGT----AAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................TACATTTGGATTTTGCAC-AGATACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26512.606300601000000020000000000196154000020120302000000000000000000000000
............................TACATTTGGATTTTGCAC-AGATACAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2753.4017001000000000000000000000115000000031500000000000000000000000000
............................TACATTTGGATTTTGCAC-AGATACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2552.6013001000000000000000000000203300001010101000000000000000000000000
............................TACATTTGGATTTTGCAC-AGATACAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2851.809000000100000000000000000021200000010200000000000000000000000000
............................TACATTTGGATTTTGCAC-AGATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2351.608002010000000000000000000300000001100000000000000000000000000000
............................................................................................CAGGGCATAATTATGATA------------TAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TTAGTAACGATGTCAGCACCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000010000000000000000000000000000
..................................................................................TTAATGGGTTCAGGGCATAATTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010000000000000000000000000000000000000000000000000000000000
........................................................................................................ATGATA------------TATA--GTAT----------------TTAGTAACGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................ACTATCGATAT----------------------------------------------------------------------------------------------------------------------------------------------------TGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATCGA-------------------.................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................TAACGATGTCAGCACCATTTGG--------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000100000000000000000000000000000000000
............................TACATTTGGATTTTGCAC-AGATAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.603000010200000000000000000000000000000000000000000000000000000000
............................TACATTTGGATTTTGCAC-AGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.603001000000000000000000000001100000000000000000000000000000000000
............................TACATTTGGATTTTGCAC-AGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.402000000000000000000000001100000000000000000000000000000000000000
.....................TGTTACATACATTTGGATTTTGCAC-AGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2850.402002000000000000000000000000000000000000000000000000000000000000
............................TACATTTGGATTTTGCAC-AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.292000000000000000000000001000000000001000000000000000000000000000
................................TTTGGATTTTGCAC-AGATACAATATACCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2950.201001000000000000000000000000000000000000000000000000000000000000
...............................ATTTGGATTTTGCAC-AGATACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.171001000000000000000000000000000000000000000000000000000000000000
................................TTTGGATTTTGCAC-AGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.171000000000000000000000000000000000000010000000000000000000000000
................................TTTGGATTTTGCAC-AGATACAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.171000000000000000000000000001000000000000000000000000000000000000
..............................CATTTGGATTTTGCAC-AGATACAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.171000000000000000000000000010000000000000000000000000000000000000
.....................TGTTACATACATTTGGATTTTGCAC-AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2770.141000000000000000000000000000000000010000000000000000000000000000
............................TACATTTGGATTTTGCAC-AGATACAATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2870.141000000000000000000000000000000000001000000000000000000000000000
...........................................CAC-AGATACAATATACCCTTATAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2490.111001000000000000000000000000000000000000000000000000000000000000
......................................................................ATTT--------TTAATGGGTTCAGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000200000000000000000000000000000000000000000000000000000000000
......................................TTTTGCAC-AGATACAATATAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.101000000000000000000000000000000000000010000000000000000000000000
....................................................................CCATTT--------TTAATGGGTTCAGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102002000000000000000000000000000000000000000000000000000000000000
............................TACATTTGGATTTTGCAC-AGATACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.061000000000000000000000000000000001000000000000000000000000000000
...................................................................CCCATTT--------TTAATGGGTTCAGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23170.061000100000000000000000000000000000000000000000000000000000000000
............................TACATTTGGATTTTGCAC-AGATACAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000010000000000000000000000000000000000000
..................GCCTGTTACATACATTTGGATTTTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000010000000000000000000000000000
....................CTGTTACATACATTTGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
TCTGCCACGCCTCCTTCTCCCTGTTACATACATTTC-------AAC-AAAACCATTATACCCTGATTTCCCATT-------GAAAATGGGTTCAGGGTATAAAAAA-----AGT--------------------------------------------------------------------G---GAAAAAAAGT--------TGAA-------AAAAAAAAACTTC---------------------------------------A-----------------------------------ATA------------------------TTAATGTTAA--------TC-------------------------------------------------------------------------A-----------------------------------------------------------------------------------------TTGTAAAAACAA-------------------------------------------------------------------------------------------------ATTCGACG-------AATCATAATTAATATA--CACA--AATTTCTAATC--------ATATTTA---TTTGA--------------------------------TTTATAATAATATATGAAAATTCTAGCTCGATTGAAAAGTAATTTAGG---------------------TTTTCG----------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................TACATACATTTC-------AAC-AAAACCATTATACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051100000
..................................TC-------AAC-AAAACCATTATACCCTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
droGri2
TCGAAGATGCTTCCTTTTGCCTGTTACAAGCATTTG-------CAG-AAATTCATTATACCCTTTCAACATATT--------TCAATGGGTTCAGTGCATGATAACGGTG----------------------------------------------------------------------------GACAAAAGTTTTAATATGCG-GATAGCTT------------TAA-------------------------------------------------------------------------------------------------TTAAATATGTTTT--------TC----ACTCGACGAACCCAAACAGC---------------------------------------GACAA-------------------------------------------------------------------------------------------------------GAA--------------------------------------------------------------------------------------------------A---------------------ATA------------------------------------------------------------------------------------------------AGAATTACAAAACTGTGTGTTTGTATTTCGGT---------------------TTT-------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 03:59 PM