ID:

dsi_18754

 Coordinate:

3l:8689901-8690085 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.8 -29.5 -29.5

Flybase annnotation

five_prime_UTR [3l_8690086_8690169_+]; exon [3l_8690086_8690169_+]; five_prime_UTR [3l_8689673_8689900_+]; exon [3l_8689673_8689900_+]; intron [3l_8689901_8690085_+]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCGGGCCCCAGTTTCAAGCCATCGGTGCGTCTCTATCCGGATTTCGCTGTGTGCGTGATTTTGTGTATAATTTTTTGCGCGCGCTCAATCAAAACAGAGCTGCGTACTTACCAGCATCAACAATAACTCACCGCTAAAAAAAAAAGAATACAATAAATATAAATAAAAAGTGCTGTGCTCTTTTGTCCGCCCTACCAAAGTTCTCGAATAATCAAATATTCCGGAATCATTGCAGTTTGATACATCCAGTGGGTCGTAAATCTTCGACGAACCGTAAATTATTTA
**************************************************.(((((((((((((((((..(((((((((((.((((..........))))))))))......(((.................))).....)))))..))))).............(((((.((...)).))))).....................(((((......))))))))))))).)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.........AGTTTCAAGCCATCGGTG.................................................................................................................................................................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0 0
..................................................................................................................................CCGCTAAAAAAAAAAGAA......................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0
.............................TCTCTATCCGGATTTCGCTGTA.......................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
.....................................................................................CAATCAAGACAGAGCT........................................................................................................................................................................................ 16 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................CAATCAAGACAGAGCTGG...................................................................................................................................................................................... 18 2 4 0.50 2 0 2 0 0 0 0
......................................................................................AATCAAGACAGAGCTGG...................................................................................................................................................................................... 17 2 20 0.20 4 0 3 0 0 1 0
......................................................................................AATCAAGACAGAGCT........................................................................................................................................................................................ 15 1 8 0.13 1 0 1 0 0 0 0
.......................................................................................ATCAAGACAGAGCTG....................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 1 0
...........................................................TGTGTGTCTAATTTTTTGCGCT............................................................................................................................................................................................................ 22 3 14 0.07 1 0 0 0 0 0 1

Anti-sense strand reads

CGCCCGGGGTCAAAGTTCGGTAGCCACGCAGAGATAGGCCTAAAGCGACACACGCACTAAAACACATATTAAAAAACGCGCGCGAGTTAGTTTTGTCTCGACGCATGAATGGTCGTAGTTGTTATTGAGTGGCGATTTTTTTTTTCTTATGTTATTTATATTTATTTTTCACGACACGAGAAAACAGGCGGGATGGTTTCAAGAGCTTATTAGTTTATAAGGCCTTAGTAACGTCAAACTATGTAGGTCACCCAGCATTTAGAAGCTGCTTGGCATTTAATAAAT
**************************************************.(((((((((((((((((..(((((((((((.((((..........))))))))))......(((.................))).....)))))..))))).............(((((.((...)).))))).....................(((((......))))))))))))).)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553488
RT_0-2 hours eggs
............................................................................................................ATGGTCGTAGTTGTTATTGAG............................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................................................................................................CGGGATGGTTTCAAGAACTT............................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................................................................................................CGGGATGTTTTTAAGAGC............................................................................... 18 2 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................CTTATTAGTTTCTCAGGC.............................................................. 18 2 5 0.40 2 0 0 0 2 0 0 0
.................................................................................GGATGTTAGTTTTGTCTCGAC....................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 1 0 0
................................................................................................................................................................................................ATGGTTTCAAGGGCT.............................................................................. 15 1 5 0.20 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................TTTAACGTCAAACTATGTA........................................ 19 2 5 0.20 1 0 0 0 0 0 1 0
.............................................................................................................................................................................................................CTTAGTAGTTTCTAAGGCTT............................................................ 20 3 9 0.11 1 0 0 0 1 0 0 0
..................................................................................................................................GGCGATCTTTTTTTTC........................................................................................................................................... 16 1 11 0.09 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................TTTCAGGAGCTTAGTAG........................................................................ 17 2 17 0.06 1 1 0 0 0 0 0 0
...........AAAGTGCGGTAGCCAT.................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 1
...................GGAGCAACGCAGAGAT.......................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0
..........................................................................................................................................................................................GGCGGGATGAGTTCAGGA................................................................................. 18 3 20 0.05 1 0 0 0 0 1 0 0
..........................................................AAAACCCATATTAACAAA................................................................................................................................................................................................................. 18 2 20 0.05 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................CTTAGTAGTTTCTCAGGCC............................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:8689851-8690135 + dsi_18754 GCGGGCCCCAGT-------------------TTCAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGAG---CTGCG-TA----CT-----------TA------------------------CCAGCAT--CAACAATAA-----------------------------------------------------------------------------------------------------------------------------------CTCACCG---CT----------------------------------------------------------------------------------------------AA---AAAAAAAAGAA--TACAATAAAT----ATAAATA-------------A----------------------------------------------------------------AAAGTGCTGTGCT-CTTTTGTCCGCCCTACCA--AAGTTCTCGAA--TAA------------------------------------TCAAATATTCC---GGAATCATTGCAGTTT------GATACATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTTA---
droSec2 scaffold_0:1176401-1176685 + GCGGGCCCCAGT-------------------TTCAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGAG---CTGCG-TA----CT-----------TA------------------------CCAGCAT--CAACAATAA-----------------------------------------------------------------------------------------------------------------------------------CTC-ACGG--CT----------------------------------------------------------------------------------------------AA---AAAAAAAAGAA--TACAATAAAT----ATAATTA-------------A----------------------------------------------------------------AAAGTGCTGTGCT-CTTTTGTCCGCCCTACCA--AAGTTCTCGAA--TAA------------------------------------TCAAATATTCC---GGAATCATTGCAGTTT------GACACATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTTA---
dm3 chr3L:8905822-8906118 + TTGGGTCCCAGT-------------------TTTAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTACCCGTTTACTTA------------------------CCAGCAT--CAACAATAA-----------------------------------------------------------------------------------------------------------------------------------CTCAACGA--CT----------------------------------------------------------------------------------------------AA---AAAAAAAAGAA--TACTATAAAT----ATAAATA-------------A----------------------------------------------------------------AAAGTGCTGTGCT-CTTCTGTCCGCTCTACCA--AAGTTCTCGAA--TAA------------------------------------TCAAATATTCC---GGAATCATTGCAGTTT------GATACATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTTA---
droEre2 scaffold_4784:5135934-5136224 - TCGGGCCCCAGT-------------------TTCAAGCCA---GCGGTGCGTCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAGTTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTAGCCGTTCACTTG------------------------CCAGCAT--CAACAAAAA-----------------------------------------------------------------------------------------------------------------------------------CTCCACGC--CT----------------------------------------------------------------------------------------------AATA-AAACAAAAGAA-------TAAAT----ATAAA---------------T----------------------------------------------------------------AAAGTGCCGTGCT-CTTTT-GTCGCTCTACCA--AAGTTCTCGAA--TAA------------------------------------TCAAATATTCC---GGAATCATTGCAGTTT------AATACATCCA--GTGGGTCGTAAATCTTCGAC---------AAGCCG----TAAATTATTAA---
droYak3 3L:3008104-3008396 - TCGGGTCCCAGT-------------------TTCAAGCCATCATCGGTGCGTCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------AGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CAACCCGTTCACTTG------------------------CCAGCAT--CAACAATAA-----------------------------------------------------------------------------------------------------------------------------------CTCCACGC--TT-------------------------------------------------GAAAAAAAGAAAA---------------------AA---------AA----ATT--AAGAG--TAAAATAAAT----ATAAA--------------TA----------------------------------------------------------------AAAGTG--------------------CCACCAA-AAGTTCTTGAA--TAA------------------------------------TCAAATATTCC---GGAATCATTGCAGTTT------GATACATCCA--GTGGGTCGTAAATCTTCGAC---------GTACCG----TAAATTATTTA---
droEug1 scf7180000409467:115262-115579 + TCGGGTCCCAGT-------------------TTCAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------TGTGT------GCG-----------TG-ATTA-------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTCCCCGTTTACTTACACTCT----A------GTCCCCCCCAGCAT--CAACAATATTTACC-------------------------------------------------------------------------------------------------------------------------CA-------------------------------------------------------------------AAAAAAAATA----------------------C---------AA----AATAAGAG--------------------A---AAAAAGATTACCATA----------------------------------------------------------------CAAGTGTTGTGCCCCTTTTTTTCGCTTTACCA--AAGTTCTCAAA--TAT------------------------------------TCAAATATTCC---GGAATCATTGCAGTTT------GATATATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTAA---
droBia1 scf7180000300910:2302510-2302840 - CCGGACCCCAGT-------------------TTCAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCTGGAT--------ACCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTCCCCGTTTGCTT--ACTGT----A------GTC---CCCAGCAT--CAACAATATTTACCAGCCACTGCCACACA------AACAAAACTCGGC-CC---------------------------------------------------------------------------------------------ACT--------------------------------------------------------------------------------------------C---CCTAA----AAGAAGAG------------AT----ATA-------GTAAT--ACCA----------------------------------------------------------------AAAGTGCTGTGCT-TTTT--TTCGCTCCTCCA---AGTTCTCAAACGTAT------------------------------------TCAAATATTCC---GGAATTATTGCAGTTT----TTGATACATCCA--GTGGGTCGTAAATCCTCGAC---------GAA-CG----TGAATTATTAA---
droTak1 scf7180000415356:300705-301015 - TCGGGCCCCAGT-------------------TTCAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCTGGAT--------TTCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTCACCGTTTACTT--ACTGT----A------GTC---CCCAGCAT--CAACAATATTTACCAGTCAA---------------------------------------------------------------------------------------------------------------------A--CACCACACA------------------------------------------------------------------------------------------C---CTT--------AAAAAGAA--TA-----ATA----AT---------------AACA----------------------------------------------------------------AAAGTGTTGTGCC-TTTTTTTTCGCTTCACGAATAAGTTCTAAAA--TAT------------------------------------TCAAATATTCC---GGAATCATTGCAGTTT------GATACATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTAA---
droEle1 scf7180000490564:136808-137122 + TCGGGCCCCAGT-------------------TTTAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCTGAAT--------TTCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTCCCCGTTCACTT--ACTGT----A------TGC---CCCAGCAT--CAACAATATTTACCAGCCGC---------------------------------------------------------------------------------------------------------------------CAA---TAA------------------------------CT---------------------------------------------------------TCCCCCCCAT---CAACAAGAAAA-A-------------TTTG-T---------------TATA----------------------------------------------------------------AAAGTGTTGTGCT-CTTT--TTCGCCCTGCCAA-ATATTCTAAAA----A-----------------------------TAC----AAAAATATTCC---GGAATCATTGCAGTTT------GACATATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTAA---
droRho1 scf7180000766314:150110-150426 + TCGGGTCCCAGT-------------------TTCAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCTGGAT--------TTCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTCCCCGTTTACTT--ACTGT----A------TGC---CTCAGCAT--CAACAATATTTACCAGCCGC---------------------------------------------------------------------------------------------------------------------ACA---TAA------------------------------CT---------------------------------------------------------CCCAACCCAC---CA-CAAGAAAAAAATA----------TTTGAT---------------AATA----------------------------------------------------------------AAAGTGTTGTGCT-TTT---TTCGCCCTGCCAA-AAATTCTCAAA--TAT------------------------------------CCTTATATTCC---GGAATCATTGCAGTTT------GACTTATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTAA---
droFic1 scf7180000451564:198462-198789 - GCGGT-CCCAGT--------T----------TTTAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCTGGAT--------TTGGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTCCCCGTTTACTT-TACTTT----A----CTTG----CCCAGCAT--CAACAATATTTACCAGCCAC---------------------------------------------------------------------------------------------------------------------AAA---TAA------------------------------CTAGCTGCCCCAACCAGCCAACCCAGAAAA---------------------------------------------AAAGAAAAG------------AA----ATA---A-------------A----------------------------------------------------------------AAAGTGTTGTGCT-TTTT--TCCACTCTGCCA--AAGTTCTCAAA--TAT------------------------------------TCAAATATTCT---GGAATCATTGCAGTTT------GATATATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTAA---
droKik1 scf7180000302486:1390050-1390356 + GCTCTCGCTCTT-------------------CTCAAGCCG---TCGGTGCGTCTCTATCTCG-AGCCTCCAGCCA-----------------------------------------------GCGGGT--------GTCTG---------TGTGTGCGA--GTGTGAGTGCTGC-TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGAG---CTGCTGTGCGTACCA------TATTT--ACTGTTATTAGTTCCTTG----GCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-AAT------ATAATATTGAG-----------CC--------------TTAAGCAACGAAAAGCTTAAA--C-TC---CG---------AA---A--------------------------------------------------------------------------------------------------------------------------------ATCCCA--AAATCATAAAA--T-------------------------------CTTCAATTCAAATATTCC---GGAATCATTGCAG------------------------GGTCGTAACTCTTCGACGT-------GCCCCGTAAATAAATTATTA----
droAna3 scaffold_13337:7743643-7744019 - TCCGCCTCTCTT--------TTCATCCGGAGCTCAAGCCA---TCGGTGCGTCTCTATCTCG-AGTT-------ATCTGTGGGACATTCTCTG------TGCCTGTATTT--G--------TCTGGTTGTGAGTGTGTGTGTGTGTATGTTGTGT------GTG--TGTTCTAC-CG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CGA---------TTTT----------CCATTGT----A------GTAC--TACAAAATCCTAACAATACTTACTA-------------------------------------------------------------------------------------------------------TATCCTTGTTTTCCTTGCAAAA---TAA------------------------------------------------------------------------------------------ACCCC---CG---------AA---AA--AATCATAAAT----TT----------------------------TTTCCAAGT--------------------------------------------TGAAAG-------------------------CTA--AAATTCTCAAA--TA----------------------------------------TATATTCC---GGAATCATTGCAGTTTCGAGTCGAAACATCGAGAGTGGGTCGTAAATCTTCGAC---------GCATCC----TAAATTATTAA---
droBip1 scf7180000395543:408378-408736 - TCGACTCCTCGTCTCTCTTTTTTATCCGGAGCTCAAGCCA---TCGGTGCGTCTCTATCTCGGAGTT-------ATCTGTGGGACATTCTGTGTATAGGTGTGTGTATTTTTGGTTGGTTGTGTGT----------GTCTG--TG---GTTGTGT------GTG--TGTTCTAC-CG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CGA---------TTTT----------CCATTGT----A------GTAC--TACAATCC--TAACAATATTTACTA-------------------------------------------------------------------------------------------------------TATCCTTGTTATCCTTGCA-------------------------------------------------------------------AAAAAAAACA---------------------AACCCC---C-AA-------------------------------TA---A-------------A----------------------------------------------------------------AAAG-------------------------CTA--AAATTCTCAAA-------------------------------------------AAATATTCC---GGAATCATTGCAGTTT------AATACATCGA--GTGGGTCGTAAATCTTCGAC---------GCATCG----TAAATTATTAA---
dp5 XR_group8:8653553-8653855 - GCGCCC--AAGT--------TTAAGCCCAGGTCCAGGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCTCGT-----------CTC---------TGTGT--GACTCTG--TGTGTT--------TTTTTTTTGCTCTCTGTGTGTGTATAATTT---------------------------------------TTTTGCGCGCGCTCAATCAAAACAGAGGAGCTGCGGTA----CA-----------------------------------------------------------------TTGCCACC------------------------------------------------------------------------------------------------------------------------CATTTTATGAAATGCAAAA-AAA------TTAATTGTGAACACCAGTAGGCCC--------------TAAAGCATT---------------------------------------------------------A---A-------------A----------------------------------------------------------------AAAG--------------------CGATACCA--AAGT---AAAA--TAT-----------------------------CTC----TAAAATATTCC---GAAATCGTTGCAGCTT------CATACATCGCCAT--CG--------CCTT-----TTTCGGTGCCCTA----TACATTATTAA---
droPer2 scaffold_50:545748-546050 + GCGCCC--AAGT--------TTAAGCCCAGGTCCAGGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCTCGT-----------CTC---------TGTGT--GACTCTG--TGTGTT--------TTTTTTTTGCTCTCTGTGTGTGTATAATTT---------------------------------------TTTTGCGCGCGCTCAATCAAAACAGTGGAGCTGCGGTA----CA-----------------------------------------------------------------TTGCCACC------------------------------------------------------------------------------------------------------------------------CATTTTATGAAATGCAAAA-AAA------TTAATTGTGAACACCAGTAGGCCC--------------TAAAGCATT---------------------------------------------------------A---A-------------A----------------------------------------------------------------AAAG--------------------CGATACCA--AAGT---AAAA--TAT-----------------------------CTC----TAAAATATTCC---GAAATCGTTGCAGCTT------CATACATCGCCAT--CG--------CCTT-----TTTCGGTGCCCTA----TACATTATTAA---
droWil2 scf2_1100000004511:7899642-7899784 - T-------------------------------------------TGGTGTGTCTCTG----------------------------------------------------------------TGTGTGT--------GTGTG---------TGTGT------GTG--TGTGTTTTTTG-A----------------TTTTGTGTATAATTTTTTGTTGTTTTTTTTCCATGTTTCTTCTATTTTTTTTTTTTTTGCGCGCGCTCAATCAAAACAGTG---TTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATTTACCA
droVir3 scaffold_13049:6595223-6595563 + GTGTG------------------------------------------TGTATGTGTG----------------------------------------------------------------TGTGTGT--------TTGTG---------TGTGC------TGC-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGAG---CCCAG-CT----AA-----------CA--------------TCAGG----------G--------------------CCC----AAACAATTCACAACAAAACTCAAC-CAACT---ATCAATAAACATGCATTTTTAATTGAAATATATATTTAGTAAATTATAAATATATTGGCTGTATTTTAATT---------------------------A--------------------------------------------------------------------------------------------------------AA--A------------------------------AACAA--AAATATTTTGCATGCAAA------------------------------------TCCGTTC------------------------------------------AAATGCAAACAAAATGTACGGCA-AGCAATATAAATGCTC----TAAA-ATTTCC---CAAATCGTTGCAGCTT------AA-ACATCAA--CAGGA--------CCTCGACGC-----CTTTC--CTAT-TTAAATATTCA---
droMoj3 scaffold_6680:4914509-4914563 + T------------------------------------------------------------------------------------------------------------------------------------------------------GTG------------TGTGCTGC-TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:6179307-6179743 - TCAGCCTCCAGC--------ATTCGTCTCG-GCCAAGCTT---TTGGTGCGTCTCT-----------------------------------------------------------------TCTGGGTGCGCATATATATGTGTTTA---TATTTGTGT--GTGTGTGTGCTTC-GGAT----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGAGCC--CATG-CA----CTAT--GA---------------TAAGC-CCAGG----------G--------------------CCT----TAAAAAAGAACAACAAAACTCAATTCTACTTAAATCATTAAA-------------------------------------AAAATTTATTGTTTATATCTTAATA---------------------------T----------AAATATTTAATT---------------------------------------------------------GTTTATTCAT---CA----------CA----------------------------------ACAATCTAAAAATTTGTAAGCAAAATTTCAGCTGCCTACATAAAATGCAAGAAGAAAAAAACCAATC------------------------------------------AAAT------AAAATAAA-AGCAGCGCAATAAAAATGCTC----TAAAAATTTCCCTACAAATTATTGCAGCTT------CA-ACATCAA--CAAGG--------CTTCGACACTTTCCGCATC--CTTCATAA-ATATTCA---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCGGGCCCCAGT-------------------TTCAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGAG---CTGCG-TA----CT-----------TA------------------------CCAGCAT--CAACAATAA-----------------------------------------------------------------------------------------------------------------------------------CTCACCG---CT----------------------------------------------------------------------------------------------AA---AAAAAAAAGAA--TACAATAAAT----ATAAATA-------------A----------------------------------------------------------------AAAGTGCTGTGCT-CTTTTGTCCGCCCTACCA--AAGTTCTCGAA--TAA------------------------------------TCAAATATTCC---GGAATCATTGCAGTTT------GATACATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTTA---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........AGT-------------------TTCAAGCCA---TCGGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCG---CT----------------------------------------------------------------------------------------------AA---AAAAAAAAGAA--..............................................................................................................................................................................................................................................................................................1811.00100000100000000000
...................................................TCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------TGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
droSec2
GCGGGCCCCAGT-------------------TTCAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGAG---CTGCG-TA----CT-----------TA------------------------CCAGCAT--CAACAATAA-----------------------------------------------------------------------------------------------------------------------------------CTC-ACGG--CT----------------------------------------------------------------------------------------------AA---AAAAAAAAGAA--TACAATAAAT----ATAATTA-------------A----------------------------------------------------------------AAAGTGCTGTGCT-CTTTTGTCCGCCCTACCA--AAGTTCTCGAA--TAA------------------------------------TCAAATATTCC---GGAATCATTGCAGTTT------GACACATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTTA---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................TTCAAGCCA---TCGGTGCGTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
dm3
TTGGGTCCCAGT-------------------TTTAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTACCCGTTTACTTA------------------------CCAGCAT--CAACAATAA-----------------------------------------------------------------------------------------------------------------------------------CTCAACGA--CT----------------------------------------------------------------------------------------------AA---AAAAAAAAGAA--TACTATAAAT----ATAAATA-------------A----------------------------------------------------------------AAAGTGCTGTGCT-CTTCTGTCCGCTCTACCA--AAGTTCTCGAA--TAA------------------------------------TCAAATATTCC---GGAATCATTGCAGTTT------GATACATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTTA---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................TTTAAGCCA---TCGGTGCGTCTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGT-------------------TTTAAGCCA---TCGGTGCGTCTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAC---------GAACCG----TAAATT........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATTCC---GGAATCATT..............................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...................................................TCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------TGTGT------G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCC---GGAATCATTGCAG..........................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATCTTCGAC---------GAACCG----TAAATT........2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CTGCG-TA----CTACCCGTTTACTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT------GATACATCCA--GTGGGTCG.............................................2111.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACATCCA--GTGGGTCGT............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCA--AAGTTCTCGAA--TAA------------------------------------T....................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCC---GGAATCATTGCA...........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATTCC---GGAATCATTGCAG..........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATATTCC---GGAATCATTG.............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................GTGTATAATTT----------------------------------------TTTGCGCGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCA--GTGGGTCGTAAATCTTCGAC---------GAA.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTTCGAC---------GAACCG----TAAATT........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATATTCC---GGAATCATTGCAG..........................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..........GT-------------------TTTAAGCCA---TCGGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-------------A----------------------------------------------------------------AAAGTGCTGTGCT-CT...........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACATCCA--GTGGGTCGTA...........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................TGT------GCG-----------TG-A----------------TTTTGTGTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CTCAATCAAAACAGTG---CTGCG-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................CTA----------------------------------------------------------------TCCGGAT--------TTCGC---------TGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCGAA--TAA------------------------------------TCAAATAT.............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------A----------------------------------------------------------------AAAGTGCTGTGCT-CTTCTGTCCGCTCT...............................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................A---TCGGTGCGTCTCTA----------------------------------------------------------------TCCGGAT--------T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTCC---GGAATCATTGCAG..........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TTTGCGCGCGCTCAATCAAAACAGTG---C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTTT------GATACATCCA--GT...................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCA--GTGGGTCGTAAATCT......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------AAAGTGCTGTGCT-CTTCTGTCCG...................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA--GTGGGTCGTAAATCT......................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................CTTA------------------------CCAGCAT--CAACAATAA-----------------------------------------------------------------------------------------------------------------------------------CTCAACG...................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGTTT------GATACATC.........................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATA-------------A----------------------------------------------------------------AAAGTGCTGTGCT-CTTCTG.......................................................................................................................................................................2611.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................GCGTCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------TGTGT------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................AAAACAGTG---CTGCG-TA----CT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GTCCCAGT-------------------TTTAAGCCA---TC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................ATAATTT----------------------------------------TTTGCGCGCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCGGGCCCCAGT-------------------TTCAAGCCA---GCGGTGCGTCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAGTTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTAGCCGTTCACTTG------------------------CCAGCAT--CAACAAAAA-----------------------------------------------------------------------------------------------------------------------------------CTCCACGC--CT----------------------------------------------------------------------------------------------AATA-AAACAAAAGAA-------TAAAT----ATAAA---------------T----------------------------------------------------------------AAAGTGCCGTGCT-CTTTT-GTCGCTCTACCA--AAGTTCTCGAA--TAA------------------------------------TCAAATATTCC---GGAATCATTGCAGTTT------AATACATCCA--GTGGGTCGTAAATCTTCGAC---------AAGCCG----TAAATTATTAA---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................A---GCGGTGCGTCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000
..........GT-------------------TTCAAGCCA---GCGGTGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
droYak3
TCGGGTCCCAGT-------------------TTCAAGCCATCATCGGTGCGTCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------AGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CAACCCGTTCACTTG------------------------CCAGCAT--CAACAATAA-----------------------------------------------------------------------------------------------------------------------------------CTCCACGC--TT-------------------------------------------------GAAAAAAAGAAAA---------------------AA---------AA----ATT--AAGAG--TAAAATAAAT----ATAAA--------------TA----------------------------------------------------------------AAAGTG--------------------CCACCAA-AAGTTCTTGAA--TAA------------------------------------TCAAATATTCC---GGAATCATTGCAGTTT------GATACATCCA--GTGGGTCGTAAATCTTCGAC---------GTACCG----TAAATTATTTA---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TCGGGTCCCAGT-------------------TTCAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCCGGAT--------TTCGC---------TGTGT------GCG-----------TG-ATTA-------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTCCCCGTTTACTTACACTCT----A------GTCCCCCCCAGCAT--CAACAATATTTACC-------------------------------------------------------------------------------------------------------------------------CA-------------------------------------------------------------------AAAAAAAATA----------------------C---------AA----AATAAGAG--------------------A---AAAAAGATTACCATA----------------------------------------------------------------CAAGTGTTGTGCCCCTTTTTTTCGCTTTACCA--AAGTTCTCAAA--TAT------------------------------------TCAAATATTCC---GGAATCATTGCAGTTT------GATATATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTAA---SizeHit CountTotal NormTotal
No Reads
droBia1
CCGGACCCCAGT-------------------TTCAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCTGGAT--------ACCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTCCCCGTTTGCTT--ACTGT----A------GTC---CCCAGCAT--CAACAATATTTACCAGCCACTGCCACACA------AACAAAACTCGGC-CC---------------------------------------------------------------------------------------------ACT--------------------------------------------------------------------------------------------C---CCTAA----AAGAAGAG------------AT----ATA-------GTAAT--ACCA----------------------------------------------------------------AAAGTGCTGTGCT-TTTT--TTCGCTCCTCCA---AGTTCTCAAACGTAT------------------------------------TCAAATATTCC---GGAATTATTGCAGTTT----TTGATACATCCA--GTGGGTCGTAAATCCTCGAC---------GAA-CG----TGAATTATTAA---SizeHit CountTotal NormTotal
No Reads
droTak1
TCGGGCCCCAGT-------------------TTCAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCTGGAT--------TTCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTCACCGTTTACTT--ACTGT----A------GTC---CCCAGCAT--CAACAATATTTACCAGTCAA---------------------------------------------------------------------------------------------------------------------A--CACCACACA------------------------------------------------------------------------------------------C---CTT--------AAAAAGAA--TA-----ATA----AT---------------AACA----------------------------------------------------------------AAAGTGTTGTGCC-TTTTTTTTCGCTTCACGAATAAGTTCTAAAA--TAT------------------------------------TCAAATATTCC---GGAATCATTGCAGTTT------GATACATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTAA---SizeHit CountTotal NormTotal
No Reads
droEle1
TCGGGCCCCAGT-------------------TTTAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCTGAAT--------TTCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTCCCCGTTCACTT--ACTGT----A------TGC---CCCAGCAT--CAACAATATTTACCAGCCGC---------------------------------------------------------------------------------------------------------------------CAA---TAA------------------------------CT---------------------------------------------------------TCCCCCCCAT---CAACAAGAAAA-A-------------TTTG-T---------------TATA----------------------------------------------------------------AAAGTGTTGTGCT-CTTT--TTCGCCCTGCCAA-ATATTCTAAAA----A-----------------------------TAC----AAAAATATTCC---GGAATCATTGCAGTTT------GACATATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTAA---SizeHit CountTotal NormTotal
No Reads
droRho1
TCGGGTCCCAGT-------------------TTCAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCTGGAT--------TTCGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTCCCCGTTTACTT--ACTGT----A------TGC---CTCAGCAT--CAACAATATTTACCAGCCGC---------------------------------------------------------------------------------------------------------------------ACA---TAA------------------------------CT---------------------------------------------------------CCCAACCCAC---CA-CAAGAAAAAAATA----------TTTGAT---------------AATA----------------------------------------------------------------AAAGTGTTGTGCT-TTT---TTCGCCCTGCCAA-AAATTCTCAAA--TAT------------------------------------CCTTATATTCC---GGAATCATTGCAGTTT------GACTTATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTAA---SizeHit CountTotal NormTotal
No Reads
droFic1
GCGGT-CCCAGT--------T----------TTTAAGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCTGGAT--------TTGGC---------TGTGT------GCG-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CTGCG-TA----CTCCCCGTTTACTT-TACTTT----A----CTTG----CCCAGCAT--CAACAATATTTACCAGCCAC---------------------------------------------------------------------------------------------------------------------AAA---TAA------------------------------CTAGCTGCCCCAACCAGCCAACCCAGAAAA---------------------------------------------AAAGAAAAG------------AA----ATA---A-------------A----------------------------------------------------------------AAAGTGTTGTGCT-TTTT--TCCACTCTGCCA--AAGTTCTCAAA--TAT------------------------------------TCAAATATTCT---GGAATCATTGCAGTTT------GATATATCCA--GTGGGTCGTAAATCTTCGAC---------GAACCG----TAAATTATTAA---SizeHit CountTotal NormTotal
No Reads
droKik1
GCTCTCGCTCTT-------------------CTCAAGCCG---TCGGTGCGTCTCTATCTCG-AGCCTCCAGCCA-----------------------------------------------GCGGGT--------GTCTG---------TGTGTGCGA--GTGTGAGTGCTGC-TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGAG---CTGCTGTGCGTACCA------TATTT--ACTGTTATTAGTTCCTTG----GCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-AAT------ATAATATTGAG-----------CC--------------TTAAGCAACGAAAAGCTTAAA--C-TC---CG---------AA---A--------------------------------------------------------------------------------------------------------------------------------ATCCCA--AAATCATAAAA--T-------------------------------CTTCAATTCAAATATTCC---GGAATCATTGCAG------------------------GGTCGTAACTCTTCGACGT-------GCCCCGTAAATAAATTATTA----SizeHit CountTotal NormTotal
No Reads
droAna3
TCCGCCTCTCTT--------TTCATCCGGAGCTCAAGCCA---TCGGTGCGTCTCTATCTCG-AGTT-------ATCTGTGGGACATTCTCTG------TGCCTGTATTT--G--------TCTGGTTGTGAGTGTGTGTGTGTGTATGTTGTGT------GTG--TGTTCTAC-CG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CGA---------TTTT----------CCATTGT----A------GTAC--TACAAAATCCTAACAATACTTACTA-------------------------------------------------------------------------------------------------------TATCCTTGTTTTCCTTGCAAAA---TAA------------------------------------------------------------------------------------------ACCCC---CG---------AA---AA--AATCATAAAT----TT----------------------------TTTCCAAGT--------------------------------------------TGAAAG-------------------------CTA--AAATTCTCAAA--TA----------------------------------------TATATTCC---GGAATCATTGCAGTTTCGAGTCGAAACATCGAGAGTGGGTCGTAAATCTTCGAC---------GCATCC----TAAATTATTAA---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................TGTATGTTGTGT------GTG--TGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAACATCGAGAGTGGGT...............................................1911.001000010
droBip1
TCGACTCCTCGTCTCTCTTTTTTATCCGGAGCTCAAGCCA---TCGGTGCGTCTCTATCTCGGAGTT-------ATCTGTGGGACATTCTGTGTATAGGTGTGTGTATTTTTGGTTGGTTGTGTGT----------GTCTG--TG---GTTGTGT------GTG--TGTTCTAC-CG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGTG---CGA---------TTTT----------CCATTGT----A------GTAC--TACAATCC--TAACAATATTTACTA-------------------------------------------------------------------------------------------------------TATCCTTGTTATCCTTGCA-------------------------------------------------------------------AAAAAAAACA---------------------AACCCC---C-AA-------------------------------TA---A-------------A----------------------------------------------------------------AAAG-------------------------CTA--AAATTCTCAAA-------------------------------------------AAATATTCC---GGAATCATTGCAGTTT------AATACATCGA--GTGGGTCGTAAATCTTCGAC---------GCATCG----TAAATTATTAA---SizeHit CountTotal NormTotal
No Reads
dp5
GCGCCC--AAGT--------TTAAGCCCAGGTCCAGGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCTCGT-----------CTC---------TGTGT--GACTCTG--TGTGTT--------TTTTTTTTGCTCTCTGTGTGTGTATAATTT---------------------------------------TTTTGCGCGCGCTCAATCAAAACAGAGGAGCTGCGGTA----CA-----------------------------------------------------------------TTGCCACC------------------------------------------------------------------------------------------------------------------------CATTTTATGAAATGCAAAA-AAA------TTAATTGTGAACACCAGTAGGCCC--------------TAAAGCATT---------------------------------------------------------A---A-------------A----------------------------------------------------------------AAAG--------------------CGATACCA--AAGT---AAAA--TAT-----------------------------CTC----TAAAATATTCC---GAAATCGTTGCAGCTT------CATACATCGCCAT--CG--------CCTT-----TTTCGGTGCCCTA----TACATTATTAA---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACACCAGTAGGCCC--------------TAAAG...........................................................................................................................................................................................................................................................................................................................................2311.0010000100000
.........................................................................................................................TCTCGT-----------CTC---------TGTGT--GACCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20190.0510000010000
droPer2
GCGCCC--AAGT--------TTAAGCCCAGGTCCAGGCCA---TCGGTGCGTCTCTA----------------------------------------------------------------TCTCGT-----------CTC---------TGTGT--GACTCTG--TGTGTT--------TTTTTTTTGCTCTCTGTGTGTGTATAATTT---------------------------------------TTTTGCGCGCGCTCAATCAAAACAGTGGAGCTGCGGTA----CA-----------------------------------------------------------------TTGCCACC------------------------------------------------------------------------------------------------------------------------CATTTTATGAAATGCAAAA-AAA------TTAATTGTGAACACCAGTAGGCCC--------------TAAAGCATT---------------------------------------------------------A---A-------------A----------------------------------------------------------------AAAG--------------------CGATACCA--AAGT---AAAA--TAT-----------------------------CTC----TAAAATATTCC---GAAATCGTTGCAGCTT------CATACATCGCCAT--CG--------CCTT-----TTTCGGTGCCCTA----TACATTATTAA---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
T-------------------------------------------TGGTGTGTCTCTG----------------------------------------------------------------TGTGTGT--------GTGTG---------TGTGT------GTG--TGTGTTTTTTG-A----------------TTTTGTGTATAATTTTTTGTTGTTTTTTTTCCATGTTTCTTCTATTTTTTTTTTTTTTGCGCGCGCTCAATCAAAACAGTG---TTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATTTACCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GTGTG------------------------------------------TGTATGTGTG----------------------------------------------------------------TGTGTGT--------TTGTG---------TGTGC------TGC-----------TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGAG---CCCAG-CT----AA-----------CA--------------TCAGG----------G--------------------CCC----AAACAATTCACAACAAAACTCAAC-CAACT---ATCAATAAACATGCATTTTTAATTGAAATATATATTTAGTAAATTATAAATATATTGGCTGTATTTTAATT---------------------------A--------------------------------------------------------------------------------------------------------AA--A------------------------------AACAA--AAATATTTTGCATGCAAA------------------------------------TCCGTTC------------------------------------------AAATGCAAACAAAATGTACGGCA-AGCAATATAAATGCTC----TAAA-ATTTCC---CAAATCGTTGCAGCTT------AA-ACATCAA--CAGGA--------CCTCGACGC-----CTTTC--CTAT-TTAAATATTCA---SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-ATTTCC---CAAATCGTTGCAA..........................................................................2211.001000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AAACAGAG---CCCAG-CT----AA-----------CA--------------TC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................................................................................................CGCGCTCAATCAAAACAGAG---CCCAG-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000010000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAA--CAGGA--------CCTCGACGC-----CT........................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC----TAAA-ATTTCC---CAAATCGTTGCAG..........................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................TGTGTGT--------TTGTG---------TGTGC------TGC-----------T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501000000001000000000000000000000000000000000000000000000000000000
.......................................................TG----------------------------------------------------------------TGTGTGT--------TTGTG---------TGTGC------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000001000000000000000000000000000000000000000000000000000000
.......................................................TG----------------------------------------------------------------TGTGTGT--------TTGTG---------TGTGC------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
.TGTG------------------------------------------TGTATGTGTG----------------------------------------------------------------TGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000010000000000000000000000000000000000000000000000000000000
droMoj3
T------------------------------------------------------------------------------------------------------------------------------------------------------GTG------------TGTGCTGC-TG-A----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TCAGCCTCCAGC--------ATTCGTCTCG-GCCAAGCTT---TTGGTGCGTCTCT-----------------------------------------------------------------TCTGGGTGCGCATATATATGTGTTTA---TATTTGTGT--GTGTGTGTGCTTC-GGAT----------------TTTTGTGTATAATTT----------------------------------------TTTGCGCGCGCTCAATCAAAACAGAGCC--CATG-CA----CTAT--GA---------------TAAGC-CCAGG----------G--------------------CCT----TAAAAAAGAACAACAAAACTCAATTCTACTTAAATCATTAAA-------------------------------------AAAATTTATTGTTTATATCTTAATA---------------------------T----------AAATATTTAATT---------------------------------------------------------GTTTATTCAT---CA----------CA----------------------------------ACAATCTAAAAATTTGTAAGCAAAATTTCAGCTGCCTACATAAAATGCAAGAAGAAAAAAACCAATC------------------------------------------AAAT------AAAATAAA-AGCAGCGCAATAAAAATGCTC----TAAAAATTTCCCTACAAATTATTGCAGCTT------CA-ACATCAA--CAAGG--------CTTCGACACTTTCCGCATC--CTTCATAA-ATATTCA---SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................TTA---TATTTGTGT--GTGTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.10110

Generated: 05/18/2015 at 10:25 AM