ID:

dsi_18752

 Coordinate:

2l:511104-511253 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACGCCCTTCGGCTCCATCATCTGCTGCTGAGGCCACAGAAGCCAAGAGCAGTCCTCCGGAGCCCAAGCGAAAAGAGGCAGGGTTAACTAGGTTAGTTCCTATAAATATTTGTGATTCAACCATCAGATAAGAGTTATTATTATTACTATGGCTAATGATGAAAACCACTGAATAACACATACTCTTTTTACTATCTTCAGAGAATCTGCGCCTCTCGATCTCTCGCTGCGTCGATCGCCAATCACCCTGA
**************************************************.......((((....((.((((((((.(((((((......(((((...(((((((((...(((((((.............)))))))...))))..))))))))))......)))).)))...........)))))))).))..))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
...................................................................................................................................................................................TACTCTTTCTAGTATCGTCAG.................................................. 21 3 1 25.00 25 19 4 0 2 0 0 0 0
..................................................................................................................................................................................ATACTCTTTCTAGTATCGTCA................................................... 21 3 2 24.00 48 41 6 0 1 0 0 0 0
.....................................................................................................................................................................................................................CTCGATCTCTCGCTGCGTC.................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0
.CGCCCTTCGGCTCCATCATCTGCTGC............................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0
............................................................................................................................................................................TAACACAGTCTCTTTTTCCTAT........................................................ 22 3 1 1.00 1 0 0 1 0 0 0 0 0
............TCCATCATCTGCTGCTGAGGCCACAGA................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0
............................................................................................................................................................................TAAGACATTTTCTTTTTACTATCT...................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................TATCACATTCTCTTTTTCCTATCT...................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0 0
...CCCTTCGGCTCCACCA....................................................................................................................................................................................................................................... 16 1 6 0.67 4 0 4 0 0 0 0 0 0
............................................................................................................................................................................TAACACATTCACTTTTTATTATCT...................................................... 24 3 2 0.50 1 0 0 1 0 0 0 0 0
......................................................CCCGGAGCCCAAGCGA.................................................................................................................................................................................... 16 1 3 0.33 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................TACTCTTTCTAGTATCGTCA................................................... 20 3 3 0.33 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGCGTCGATCACCA.......... 15 1 6 0.33 2 0 1 0 1 0 0 0 0
..................................................................................................................................................................................ATACTCTTTCTAGTATCGTC.................................................... 20 3 19 0.26 5 5 0 0 0 0 0 0 0
ACTCCCTTCGGCTCCACCA....................................................................................................................................................................................................................................... 19 2 4 0.25 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................TTTTTACTATCTGCTGAGATT............................................. 21 3 7 0.14 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGTGTCGATCGCCA.......... 15 1 13 0.08 1 0 1 0 0 0 0 0 0
.....................................................CACCGGAGCCGTAGCGAAA.................................................................................................................................................................................. 19 3 15 0.07 1 0 0 0 0 0 0 1 0
....................................................GCCCCGGAGCCCAAGCG..................................................................................................................................................................................... 17 2 15 0.07 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................GGCTAATGATGAAGA...................................................................................... 15 1 18 0.06 1 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................TCCCTGCGGCGATCGCC........... 17 2 19 0.05 1 0 1 0 0 0 0 0 0
....CCTTCGGCTCCACCA....................................................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................TGAAAACCACTGGAT............................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 1
.............................................................................CAGGGTCATCTAGGTT............................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

TGCGGGAAGCCGAGGTAGTAGACGACGACTCCGGTGTCTTCGGTTCTCGTCAGGAGGCCTCGGGTTCGCTTTTCTCCGTCCCAATTGATCCAATCAAGGATATTTATAAACACTAAGTTGGTAGTCTATTCTCAATAATAATAATGATACCGATTACTACTTTTGGTGACTTATTGTGTATGAGAAAAATGATAGAAGTCTCTTAGACGCGGAGAGCTAGAGAGCGACGCAGCTAGCGGTTAGTGGGACT
**************************************************.......((((....((.((((((((.(((((((......(((((...(((((((((...(((((((.............)))))))...))))..))))))))))......)))).)))...........)))))))).))..))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M024
male body		 M053
female body
...................................................................................................................................................................................ATGAGAAAGATCATAGCAGTC.................................................. 21 3 1 411.00 411 360 44 7 0 0 0 0 0
...................................................AGGGGGCCTCGGGTT........................................................................................................................................................................................ 15 1 7 22.71 159 21 12 69 38 19 0 0 0
....................................................................................................................................................................................TGAGAAAGATCATAGCAGTC.................................................. 20 3 4 14.75 59 53 4 2 0 0 0 0 0
...................................................................................................................................................................................ATGAGAAAGATCATAGCAGT................................................... 20 3 3 9.00 27 24 3 0 0 0 0 0 0
..................................................................................................................................................................................TATGAGAAAGATCATAGCAGT................................................... 21 3 2 2.50 5 4 1 0 0 0 0 0 0
...................................................AGGGGGCCTCGGGTTC....................................................................................................................................................................................... 16 1 3 1.00 3 0 0 1 1 1 0 0 0
...................................................AGGGGGCCTCGGGTTCGA..................................................................................................................................................................................... 18 2 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................TGAGAAAGATCATAGCAGT................................................... 19 3 9 0.56 5 5 0 0 0 0 0 0 0
.............................................CTCGTCAGGTGGCTTCGGCTT........................................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................................ATGAGAAAGATCATAGTAGTC.................................................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0
.................................................TAAGGGGGCCTCGGGTT........................................................................................................................................................................................ 17 2 11 0.18 2 0 0 0 1 1 0 0 0
.......AGCCGAGGTAGTAGGCTA................................................................................................................................................................................................................................. 18 2 6 0.17 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................TACAAGTCTCTTAGA........................................... 15 1 8 0.13 1 0 1 0 0 0 0 0 0
.................................................TCAGGGGGCCTCGGGTG........................................................................................................................................................................................ 17 2 9 0.11 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................ATACAAGTCTCTTAG............................................ 15 1 10 0.10 1 1 0 0 0 0 0 0 0
...................................................AGGGGGCCTCGGGTTTG...................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 1 0 0 0 0
..................................................AAGGGGGCCTCGGGTTCGA..................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 1
......................................TTCGGTTCTGGTCAGGGTGC................................................................................................................................................................................................ 20 3 14 0.07 1 0 0 0 0 0 0 1 0
........GTCGAGCTAGTAGACGACG............................................................................................................................................................................................................................... 19 2 16 0.06 1 0 0 0 0 0 0 1 0
...................................................AGGCGGCCTCGGGTT........................................................................................................................................................................................ 15 1 17 0.06 1 1 0 0 0 0 0 0 0
.............................................................................................TCAAGGTTATTTATAAA............................................................................................................................................ 17 1 18 0.06 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................ACTTTTGTTGACTTAT............................................................................ 16 1 20 0.05 1 0 0 0 0 1 0 0 0
TGCTGGAAGCCGCGGTAGA....................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:511054-511303 + dsi_18752 ACGCCCTTCGGCTCCATC-------------------------ATCTGCT-----------GCTG-------------------------------------AGGCCACAGAAGCCAAG---AGCAGTCCTCCGGAG---CCCAAGCGAAAAGAGGCAGGGTTAACTAGGTTAGTTC-CT-ATA------AATATT----TGTGATT---------CAACCATCAGA--------------TAAGAGTTATT-------------------------ATTATTACTATGGCTA--------------------------ATGA-T------------------------------------------------------------------------------------------------------------------------------------------------------------GA--A---------------------------------------------AAC-----------------------------------CACTGAATAA-------------CACATA---------C------T--CTTTTTACTATCTTCAGAGAATCTGCGCCTCTCGATCTCTCGCTG---CGTCGATCGCCAATCACCCTGA--------------------
droSec2 scaffold_14:520239-520482 + ACGCCCCTCAGCTCCATC-------------------------ATCTGCT-----------GCTG-------------------------------------AGGCCACAGAAGCCAAG---AGCAGTCCTCCGGAG---CCCAAGCGAAAAGAGGCAGGGTTAACTAGGTTAGTTC-CT-ATA------AATATT----TGTGATT---------CACCCATCAGA--------------TAAGAGTTA-------------------------------TTACTATGGCTA--------------------------ATGA-T------------------------------------------------------------------------------------------------------------------------------------------------------------GA--A---------------------------------------------AAC-----------------------------------CACTGAATAA-------------CGCAAA---------C------T--CTTTTTACTATCTTCAGAGAATCTGCGCCTCTCGATCTCTCGCTG---CGTCGATCGCCAATCACCCTGA--------------------
dm3 chr2L:537660-537912 + ACGCCCTTCAGCTCCATC-------------------------ATCTGCT-----------GCTG-------------------------------------AGGCCACAGAAGCCAAG---AGTAGTCCTCCGGAG---CCCAAGCGAAAAGAGGCAGGGTTAACTAGGTTAGTTC-CT-A--------AATATT----TGTGATT---------CACGCATCAGA--------------TAAAAGTTA-------------------------------TTACTATGGCTAGAC----------------TCCCCTGATGA-T------------------------------------------------------------------------------------------------------------------------------------------------------------GA--A---------------------------------------------AAC-----------------------------------CACTGAATAA-------------CGCATA---------C---T--C--TTTTTTACTACCTTCAGAGAATCTGCGCCTCTCGATCTCTCGCTG---CGTCGATCGCCAATCACCCTGA--------------------
droEre2 scaffold_4929:592726-592938 + ACGCCCTTCAGCTCCATC-------------------------ATCCGCT-----------GCTG-------------------------------------AGGCCACAGAAGCCAAG---AGCAGTCCGCCAGAG---CCCAAGCGAAAAGAGGCTGGGTTAACTAGGTTAGTGC-TT-ATA------AATA---------------------------------------------------------------------------------------GAGCT-TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAG--A---------------------------------------------AAC-----------------------------------CACTGAATAA-------------CGCCTT--------TCTTTC--C--CTTTTTGCTAACTCCAGGGAATCTGCGCCTCTCGATCTCTCGCTG---CGTCGATCGCCAATCACCCTGA--------------------
droYak3 2L:524837-525070 + ACGTCCCTCAGCTCCATC-------------------------GTCTGCT-----------GCCG-------------------------------------AGGCCACAGAAGCCAAG---AGCAGTCCTCCGGAG---CCCAAGCGAAAAGAAGCAGGGCAAACTAGGTTAGTGC-TT-ATC------ATTATT----CGTGATG-----------------------------------------------------------------------------------C-----------------------CCATGA----TGATGATG------------------------------------------------------------------------------------------------------TT------------CTCCG----------------------------AA--T---------------------------------------------GCC-----------------------------------CAGTGATTAA-------------CACATA--------CA--TACTC--CTTTTTACTTTCTCCAGAGAATCTGCGCCTCTAGATCTTTCGCTG---CGTCGATCGCCCATCACCCTGA--------------------
droEug1 scf7180000409554:1269134-1269373 + ACGGCCCTCAGCTCCCTC-------------------------TTCAGCT-----------GCTG-------------------------------------AACCCACAGAACCCAAG---AGCAGTCCACCTGAG---CCCAAGCGAAAGGAGGCAGGAGGAAGTCGGTAAGTTA-GTTAGA------AACATC----AGAAATA---------CAT---TTACA--------------TAA--------------------------------------AAC-ATGCCAA--------------------------AAGACT------------------------------------------------------------------------------------------------------------------------------------------------------------GAACA---------------------------------------------AAT-----------------------------------CCCTGAATAC-------------CACGTA--------AA--TC--T--TCGTTTACTTTCTCCAGGGAATCTGCGCCATTAGATCTCTCGCTG---CGTAGGTCCCCAATCTCCCTGA--------------------
droBia1 scf7180000302261:3293648-3293869 - ACGTCCCTCAGCTCCCTC-------------------------CTCGGCT-----------GCTG-------------------------------------AGGCCACAGAGCCGAAG---AGCAGTCCACCGGAA---CCCAAGCGAAAGGAGGCGGGAGGAAGTCGGTAAGTTG-CT-ATCCAGA--AAAATT----TAAAATA---------CA-------------------------------------------------------------------------------------------------CAATA----TTATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------CCTTGAATAA-------------CAAAAA--------AA--TC--C--ATAATTTCCATCTCCAGCGAATCTGCGCCTTTGGATCTCTCGTTG---CGTCGATCGCCCATCTCCCTGA--------------------
droTak1 scf7180000415856:120642-121009 + ACGCCCCTCGGCTCCCTC-------------------------CTCAGCT-----------GCCG-------------------------------------AGGCCACCGAACCCAAG---AGCAGTCCACCGGAA---CCCAAGCGAAAGGAGGCGGGAGGAAGTCGGTAAGTGC-CT-ATT------ATAATT----AAT---CCAAAAATAATAGGAATTAACACCCGCGAATTCTTGAGGATTTA--GTAAATTAATGAAATAAATTATATAAATAGCGAT-CC-------------------------CTAAGA----A-------------------------------------------------------------------------------------------------------------TT------------CGCGG-GACTTTGATA-GACTAAATGTATTAA-AA--CAACCATCTGAATAATACATACACCGATTCCTTAAGAATTATAAGACCC-----------------------------------ATCTGAATAA-------------CACATA--------AA--TCCCC--CAT----TTATTTCTAGCGAATCTGCGCCCTTGGATCTCTCGCTG---CGTCGATCGCCCATCTCCCTGA--------------------
droEle1 scf7180000491026:281937-282238 - ACGCCCCTCAGCTCCCTC-------------------------ATCAGCT-----------GCTG-------------------------------------AGGCGACGGAAGCCAAG---AGCAGTCCACCGGAA---CCTATGCGAAAAGAGGCAGGCGGAAGTCGGTAAGTGG-GA-CT-----------------------------------------------------------------------------------------------------------------------------------------------------CTAAAAAATTAGGGATGTATAGCTTAAAACTCTATTAAACTACTGTAAACTATAAAAGACGAAGCTATAAAGGTTCTGCAGA-------------------------------------------------------------------CA--T---------------------------------------------ATCATAA------GTTACACGATGTCCTGTTTACACACCCCCTAATAA-------------T--------------A--TG--T-ATATTTCCATTTCTCCAGCGAATCTGCGCCCTTGGATCTCTCGCTG---CGTCGATCGCCGATCTCCTTGA--------------------
droRho1 scf7180000779917:107741-107836 - ACGACCCTCAGCTCCCTC-------------------------GTCAGCT-----------GCTG-------------------------------------AGGCGGCTGAGCCCAAG---AGCAGTCCACCGGAA---CCTAAGCGAAAGGAAGCAGGAGGAAGTCGGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453904:815749-815960 + GCGCCCCTCGGCGCCTTC-------------------------ATCCGCC-----------GCGG-------------------------------------AGGCCACGGAACCCAAG---AGCAGTCCGCCGGAA---CCCAAAAGGAAGGAGGCGGGCAGCAGTCGGTAAGTTC-AA-AGCCAACTG-----------------------------------G----------------------------------------------------------AT---------------------------------------GGTGATC------------------------------------------------------------------------------------------------------TT------------CTG--------------------------AAAGGG--G---------------------------------------------AAC-----------------------------------CCCAGTATAA-------------CCCAAT---------A---------------TCTGCCTCCAGGGAATCTGCGCCTCTGGATCTCTCGCTG---CGGCGGTCGCCCATTCCGCTGA--------------------
droKik1 scf7180000302401:881245-881455 + GCGACCCTCGGCACCCTC-------------------------ATCTGCA-----------GCCG-------------------------------------AGGTGCCAGAACCCAAG---AGCAGTCCTCCCGAG---CCCAAGCGCAAGGAGGCGGGCGGAAGTCGGTAAGAAT-CG-TC-----TG-----------------------------------G----------------------------------------------------------GA---------------------------------------GATTC--TTCAAAGATTAGGGAAGCTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTAA-------------------------TTCA--TA-----CATCTTCTCCCCTTTAGAGAGTCTGCGCCCTTGGATCTCTCACTG---CGCCGTTCGCCCATCTCTCTGA--------------------
droAna3 scaffold_12943:4690032-4690274 - GCGTCCCTCGGCACCCTC-------------------------ATCCGCC-----------GCAG-------------------------------------AACCCATAGAGCCCAAG---AGCAGTCCACCGGAG---CCGAAGCGCAAGGAAGCGGGTGGCACTCGGTATGTTTTGT-AATGAGCTA-----------------------------------G----------------------------------------------------------CT---------------------------------------AATGATT------------------------------------------------------------------------------------------------------ATCCTTGATCCTTCCGCAGA---------------------------AA--T---------------------------------------------GCCAAGTACTAAAGGTGC------------------T-T----------------------------CTTTTTTTCT--TC--C--CACTTTCCCACCTTTAGAGAGTCTGCTCCTTTGGATCTTTCCCTA---CGCCGTTCCCCAATCTCCCTGA--------------------
droBip1 scf7180000395973:880727-880957 - GCGTCCCTCGGCGCCCTC-------------------------ATCCGCC-----------GCAG-------------------------------------AAGCCATAGAGCCCAAG---AGCAGTCCACCGGAG---CCGAAGCGCAAGGAAGCGGGAAGCACTCGGTAGGTTT-AT-ATTGACCTA-----------------------------------G----------------------------------------------------------CT---------------------------------------CTCGATT------------------------------------------------------------------------------------------------------GTCCTGAATCCTTTCTCAGA---------------------------AA--A---------------------------------------------GCC-----------------------------------AAATACTTAA--------------CATA---------CA--TC--C--TTATTTTCCTCCCTTAGAGAATCTGCTCCTTTGGACCTTTCCCTA---CGCCGCTCCCCCATCTCTCTGA--------------------
dp5 4_group3:1054892-1055140 - TCGTCCCACAGCAGGCAC-------------------------AGGCTCA-----------GCCGAAG---------GAGGAGGAGGAG-------------GAGTCCTGGAGCCAAAGAGCAGCAGTCCACCAGAA---CCCAAGAGGAAGGAGGCTGGAGGAAGTCGGTGAGTAG-AT-GA------------G--------------------------CGAGG--------------------------------------------------------------------G----------------TCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCACAATCCTCTTGCTAA-------------CCGAAG---------A--TC--T--TTCTCTCTGTCTTTCAGTGAATCTGCGCCTCTCGACCTTTCGTTT---CGACGATCTCCCATCTCCATCTTGCAGCATCGACAGCGGCAT
droPer2 scaffold_1:2532315-2532563 - TCGTCCCACAGCAGGCAC-------------------------TGGCTCA-----------GCCGATG---------GAGGAGGAGGAG-------------GAGTCCTGGAGCCAAAAAGTAGCAGTCCACCAGAA---CCCAAGAGGAAGGAGGCTGGAGGCAGTCGGTGAGTAG-AT-GA------------G--------------------------CGAGG--------------------------------------------------------------------G----------------TCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCACAATCCTCCTGCTAA-------------CCGAAG---------A--TC--T--TTCTCTCTATCTTTCAGTGAATCTGCGCCTCTCGACCTTTCGTTT---CGACGATCTCCCATCTCCATCTTGCAGCATCGACAGCGGCAT
droWil2 scf2_1100000004585:2802614-2802830 - CAAGGAAACGGCATCATC-------------------------ATCTGCCACATCGGAGCAGCCAACG---------G------------------------CTGCAGCTAAACCAAGG---AGCAGTCCCTCGGAGGGAGTAAAACGCAAAGAAGCCACTGGCAGTCGGTAAGTTA-AA-CC--------------------------------------GTTAGA--------------TAAC---------------------------------------------------------------------CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTTAAAAG-CAATCTGTAA-------------TGCGA-----------------------GTTCCTTCTACTAGTGAAACGGTTCCATTGGATCTCTCATTGTCCCGTCGTTCGCCCATC---------------------------
droVir3 scaffold_12963:18978560-18978823 + dvi_12532 ACGCCCACGGCCACGCCCAATCCAATGGCCAGCAACAGCAGCCAGCAGCA-----------GCCGGGCCTGCCCGCACAGGAGCCAGAGCGTTCAAGCGGCATGGAGCCGGAACCCAAG---AGCAGTCCGCCGGAG---CCGAAGCGTAAGGAAGCCGGCGGCACACGGTACGTTG-CA-ACGG----------------------------------------GC--------------T---------------------------------------AAGCT-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTA-AAT-T----------------------------CCTCTATTAA--TC--C--CTCTCTCCCTCCCGCAGTGAGACTACGCCGCTGGATCTGTCGCTG---CGCCGCTCGCCAATCGCCGCG---------------------
droMoj3 scaffold_6500:24202626-24202821 - GCGCCCC--AGCGCCAGC-------------------------AACGT-C-----------C----------------------------------------CGGAGACGGAGTCCAAG---ACCAGTCCGCCGGAG---CCCAAACGCAAGGAGGCCAGTGGCATGCGGTAAGTCC-AT-ACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCCATAAGTAAACCAAACTTACCCT------CCCCT--------------TGTAATCGCCCTCACAGCGATACCACGCCCCTAGACCTATCCCTA---CGTCGCTCGCCCATTTCGCCG---------------------
droGri2 scaffold_15252:6884209-6884544 + TCGTCCAACTCCTGTGAG-------------------------CATT---------------------------------------------TCGAGCAACCTGGAAACTGAACCCAAG---AAAAGTCCAGCAGAA---CCCAAGCGCAAGGAAACAAGCGGCATACGGTAAGTCA-AA-GAAGAT--------TCCAATCAAATT---------CAGGAATTAAA--------------AAGTAATTA-------------------------------AAAATAAGCAAAAATTATAATTATTCAATTTTCCAACGT----TCAT----------------------------------------------------------------------------------CAGAAGATCATCAAAAAACTCTCG--------------------ATTTATGATAAGTTTAAATATAGAAAGGA--G---------AATAA----TCGTTCGTGTCCTTA----------------------------------------AATTGAACATCCC------------------------------------------CTTTTTTAACGTACTTGCAGTGAGACGACGCCACTGGATTTATCGCTA---AGACGCTCGCCAATCGC-------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACGCCCTTCGGCTCCATC-------------------------ATCTGCT-----------GCTG-------------------------------------AGGCCACAGAAGCCAAG---AGCAGTCCTCCGGAG---CCCAAGCGAAAAGAGGCAGGGTTAACTAGGTTAGTTC-CT-ATA------AATATT----TGTGATT---------CAACCATCAGA--------------TAAGAGTTATT-------------------------ATTATTACTATGGCTA--------------------------ATGA-T------------------------------------------------------------------------------------------------------------------------------------------------------------GA--A---------------------------------------------AAC-----------------------------------CACTGAATAA-------------CACATA---------C------T--CTTTTTACTATCTTCAGAGAATCTGCGCCTCTCGATCTCTCGCTG---CGTCGATCGCCAATCACCCTGA--------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGATCTCTCGCTG---CGTC......................................1911.00100100000000000000
.CGCCCTTCGGCTCCATC-------------------------ATCTGCT-----------GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
............TCCATC-------------------------ATCTGCT-----------GCTG-------------------------------------AGGCCACAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
droSec2
ACGCCCCTCAGCTCCATC-------------------------ATCTGCT-----------GCTG-------------------------------------AGGCCACAGAAGCCAAG---AGCAGTCCTCCGGAG---CCCAAGCGAAAAGAGGCAGGGTTAACTAGGTTAGTTC-CT-ATA------AATATT----TGTGATT---------CACCCATCAGA--------------TAAGAGTTA-------------------------------TTACTATGGCTA--------------------------ATGA-T------------------------------------------------------------------------------------------------------------------------------------------------------------GA--A---------------------------------------------AAC-----------------------------------CACTGAATAA-------------CGCAAA---------C------T--CTTTTTACTATCTTCAGAGAATCTGCGCCTCTCGATCTCTCGCTG---CGTCGATCGCCAATCACCCTGA--------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................AG---CCCAAGCGAAAAGAGGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.................................................T-----------GCTG-------------------------------------AGGCCACAGAAGCCAAG---AGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.............................................................................................................................AGTCCTCCGGAG---CCCAAGCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGATCTCTCGCTG---CGTCGATCGCC...............................2611.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGATCTCTCGCTG---CGTC......................................1911.0010010
dm3
ACGCCCTTCAGCTCCATC-------------------------ATCTGCT-----------GCTG-------------------------------------AGGCCACAGAAGCCAAG---AGTAGTCCTCCGGAG---CCCAAGCGAAAAGAGGCAGGGTTAACTAGGTTAGTTC-CT-A--------AATATT----TGTGATT---------CACGCATCAGA--------------TAAAAGTTA-------------------------------TTACTATGGCTAGAC----------------TCCCCTGATGA-T------------------------------------------------------------------------------------------------------------------------------------------------------------GA--A---------------------------------------------AAC-----------------------------------CACTGAATAA-------------CGCATA---------C---T--C--TTTTTTACTACCTTCAGAGAATCTGCGCCTCTCGATCTCTCGCTG---CGTCGATCGCCAATCACCCTGA--------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................CAAGCGAAAAGAGGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCGATCTCTCGCTG---CGTCGAT...................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................ACAGAAGCCAAG---AGTAGTCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
....................................................................................................................................CGGAG---CCCAAGCGAAAAGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACCTTCAGAGAATCTGCGCC.............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................ACTATGGCTAGAC----------------TCCCCTGATGA-T------------------------------------------------------------------------------------------------------------------------------------------------------------G.................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGAGAATCTGCGCCTC...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................T-----------GCTG-------------------------------------AGGCCACAGAAGCCAAG---AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................GCGAAAAGAGGCAGGGTTAACTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TCTGCT-----------GCTG-------------------------------------AGGCCACAGAAGCCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGAGAATCTGCGCCTCTC.........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................CCCAAGCGAAAAGAGGCAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................................................................................................................................................................................................................TATGGCTAGAC----------------TCCCCTGATG.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCGCTG---CGTCGATCGC................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................G---CCCAAGCGAAAAGAGGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCGCCTCTCGATCTCTCGCTG---CGTCG.....................................3011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGATCTCTCGCTG---CGTCGA....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................GGAG---CCCAAGCGAAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...........................................................................................................................................................................................................................................................................................ACTATGGCTAGAC----------------TCCCCTG....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CCGGAG---CCCAAGCGAAAAGAGGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................CAGGGTTAACTAGGTTAGTTC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CAAG---AGTAGTCCTCCGGAG---CCCAAGCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGCGCCTCTCGATCTCTC.................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACGCCCTTCAGCTCCATC-------------------------ATCTGCT-----------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
............TCCATC-------------------------ATCTGCT-----------GCTG-------------------------------------AGGCCACAGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................GAAAAGAGGCAGGGTTAACTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCTCGCTG---CGTCGAT...................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGAGAATCTGCGCCGAG..........................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droEre2
ACGCCCTTCAGCTCCATC-------------------------ATCCGCT-----------GCTG-------------------------------------AGGCCACAGAAGCCAAG---AGCAGTCCGCCAGAG---CCCAAGCGAAAAGAGGCTGGGTTAACTAGGTTAGTGC-TT-ATA------AATA---------------------------------------------------------------------------------------GAGCT-TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAG--A---------------------------------------------AAC-----------------------------------CACTGAATAA-------------CGCCTT--------TCTTTC--C--CTTTTTGCTAACTCCAGGGAATCTGCGCCTCTCGATCTCTCGCTG---CGTCGATCGCCAATCACCCTGA--------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................AGAG---CCCAAGCGAAAAGAGGCTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.....................................................................................................................................AGAG---CCCAAGCGAAAAGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.............CCATC-------------------------ATCCGCT-----------GCTG-------------------------------------AGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
........................................................................................................GCCACAGAAGCCAAG---AGCAGTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTCGCTG---CGTCGATCGCCA..............................2311.0011000000
droYak3
ACGTCCCTCAGCTCCATC-------------------------GTCTGCT-----------GCCG-------------------------------------AGGCCACAGAAGCCAAG---AGCAGTCCTCCGGAG---CCCAAGCGAAAAGAAGCAGGGCAAACTAGGTTAGTGC-TT-ATC------ATTATT----CGTGATG-----------------------------------------------------------------------------------C-----------------------CCATGA----TGATGATG------------------------------------------------------------------------------------------------------TT------------CTCCG----------------------------AA--T---------------------------------------------GCC-----------------------------------CAGTGATTAA-------------CACATA--------CA--TACTC--CTTTTTACTTTCTCCAGAGAATCTGCGCCTCTAGATCTTTCGCTG---CGTCGATCGCCCATCACCCTGA--------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................AGTCCTCCGGAG---CCCAAGCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000
droEug1
ACGGCCCTCAGCTCCCTC-------------------------TTCAGCT-----------GCTG-------------------------------------AACCCACAGAACCCAAG---AGCAGTCCACCTGAG---CCCAAGCGAAAGGAGGCAGGAGGAAGTCGGTAAGTTA-GTTAGA------AACATC----AGAAATA---------CAT---TTACA--------------TAA--------------------------------------AAC-ATGCCAA--------------------------AAGACT------------------------------------------------------------------------------------------------------------------------------------------------------------GAACA---------------------------------------------AAT-----------------------------------CCCTGAATAC-------------CACGTA--------AA--TC--T--TCGTTTACTTTCTCCAGGGAATCTGCGCCATTAGATCTCTCGCTG---CGTAGGTCCCCAATCTCCCTGA--------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACGTCCCTCAGCTCCCTC-------------------------CTCGGCT-----------GCTG-------------------------------------AGGCCACAGAGCCGAAG---AGCAGTCCACCGGAA---CCCAAGCGAAAGGAGGCGGGAGGAAGTCGGTAAGTTG-CT-ATCCAGA--AAAATT----TAAAATA---------CA-------------------------------------------------------------------------------------------------CAATA----TTATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------CCTTGAATAA-------------CAAAAA--------AA--TC--C--ATAATTTCCATCTCCAGCGAATCTGCGCCTTTGGATCTCTCGTTG---CGTCGATCGCCCATCTCCCTGA--------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACGCCCCTCGGCTCCCTC-------------------------CTCAGCT-----------GCCG-------------------------------------AGGCCACCGAACCCAAG---AGCAGTCCACCGGAA---CCCAAGCGAAAGGAGGCGGGAGGAAGTCGGTAAGTGC-CT-ATT------ATAATT----AAT---CCAAAAATAATAGGAATTAACACCCGCGAATTCTTGAGGATTTA--GTAAATTAATGAAATAAATTATATAAATAGCGAT-CC-------------------------CTAAGA----A-------------------------------------------------------------------------------------------------------------TT------------CGCGG-GACTTTGATA-GACTAAATGTATTAA-AA--CAACCATCTGAATAATACATACACCGATTCCTTAAGAATTATAAGACCC-----------------------------------ATCTGAATAA-------------CACATA--------AA--TCCCC--CAT----TTATTTCTAGCGAATCTGCGCCCTTGGATCTCTCGCTG---CGTCGATCGCCCATCTCCCTGA--------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACGCCCCTCAGCTCCCTC-------------------------ATCAGCT-----------GCTG-------------------------------------AGGCGACGGAAGCCAAG---AGCAGTCCACCGGAA---CCTATGCGAAAAGAGGCAGGCGGAAGTCGGTAAGTGG-GA-CT-----------------------------------------------------------------------------------------------------------------------------------------------------CTAAAAAATTAGGGATGTATAGCTTAAAACTCTATTAAACTACTGTAAACTATAAAAGACGAAGCTATAAAGGTTCTGCAGA-------------------------------------------------------------------CA--T---------------------------------------------ATCATAA------GTTACACGATGTCCTGTTTACACACCCCCTAATAA-------------T--------------A--TG--T-ATATTTCCATTTCTCCAGCGAATCTGCGCCCTTGGATCTCTCGCTG---CGTCGATCGCCGATCTCCTTGA--------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACGACCCTCAGCTCCCTC-------------------------GTCAGCT-----------GCTG-------------------------------------AGGCGGCTGAGCCCAAG---AGCAGTCCACCGGAA---CCTAAGCGAAAGGAAGCAGGAGGAAGTCGGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCGCCCCTCGGCGCCTTC-------------------------ATCCGCC-----------GCGG-------------------------------------AGGCCACGGAACCCAAG---AGCAGTCCGCCGGAA---CCCAAAAGGAAGGAGGCGGGCAGCAGTCGGTAAGTTC-AA-AGCCAACTG-----------------------------------G----------------------------------------------------------AT---------------------------------------GGTGATC------------------------------------------------------------------------------------------------------TT------------CTG--------------------------AAAGGG--G---------------------------------------------AAC-----------------------------------CCCAGTATAA-------------CCCAAT---------A---------------TCTGCCTCCAGGGAATCTGCGCCTCTGGATCTCTCGCTG---CGGCGGTCGCCCATTCCGCTGA--------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCGACCCTCGGCACCCTC-------------------------ATCTGCA-----------GCCG-------------------------------------AGGTGCCAGAACCCAAG---AGCAGTCCTCCCGAG---CCCAAGCGCAAGGAGGCGGGCGGAAGTCGGTAAGAAT-CG-TC-----TG-----------------------------------G----------------------------------------------------------GA---------------------------------------GATTC--TTCAAAGATTAGGGAAGCTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTAA-------------------------TTCA--TA-----CATCTTCTCCCCTTTAGAGAGTCTGCGCCCTTGGATCTCTCACTG---CGCCGTTCGCCCATCTCTCTGA--------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GCGTCCCTCGGCACCCTC-------------------------ATCCGCC-----------GCAG-------------------------------------AACCCATAGAGCCCAAG---AGCAGTCCACCGGAG---CCGAAGCGCAAGGAAGCGGGTGGCACTCGGTATGTTTTGT-AATGAGCTA-----------------------------------G----------------------------------------------------------CT---------------------------------------AATGATT------------------------------------------------------------------------------------------------------ATCCTTGATCCTTCCGCAGA---------------------------AA--T---------------------------------------------GCCAAGTACTAAAGGTGC------------------T-T----------------------------CTTTTTTTCT--TC--C--CACTTTCCCACCTTTAGAGAGTCTGCTCCTTTGGATCTTTCCCTA---CGCCGTTCCCCAATCTCCCTGA--------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................CCCATAGAGCCCAAG---AGCAGTCCACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
................................................................................................................GCCCAAG---AGCAGTCCACCGGAA---A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
...........................................................................................................................GCAGTCCACCGGAG---CCGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droBip1
GCGTCCCTCGGCGCCCTC-------------------------ATCCGCC-----------GCAG-------------------------------------AAGCCATAGAGCCCAAG---AGCAGTCCACCGGAG---CCGAAGCGCAAGGAAGCGGGAAGCACTCGGTAGGTTT-AT-ATTGACCTA-----------------------------------G----------------------------------------------------------CT---------------------------------------CTCGATT------------------------------------------------------------------------------------------------------GTCCTGAATCCTTTCTCAGA---------------------------AA--A---------------------------------------------GCC-----------------------------------AAATACTTAA--------------CATA---------CA--TC--C--TTATTTTCCTCCCTTAGAGAATCTGCTCCTTTGGACCTTTCCCTA---CGCCGCTCCCCCATCTCTCTGA--------------------SizeHit CountTotal NormTotal
No Reads
dp5
TCGTCCCACAGCAGGCAC-------------------------AGGCTCA-----------GCCGAAG---------GAGGAGGAGGAG-------------GAGTCCTGGAGCCAAAGAGCAGCAGTCCACCAGAA---CCCAAGAGGAAGGAGGCTGGAGGAAGTCGGTGAGTAG-AT-GA------------G--------------------------CGAGG--------------------------------------------------------------------G----------------TCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCACAATCCTCTTGCTAA-------------CCGAAG---------A--TC--T--TTCTCTCTGTCTTTCAGTGAATCTGCGCCTCTCGACCTTTCGTTT---CGACGATCTCCCATCTCCATCTTGCAGCATCGACAGCGGCATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................GTGAGTAG-AT-GA------------G--------------------------CGAGG--------------------------------------------------------------------G----------------...........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCATCGACAGCGGCA.1911.0010010000000
.............................................................................GAGGAGGAGGAG-------------GAGTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.1410100000000
droPer2
TCGTCCCACAGCAGGCAC-------------------------TGGCTCA-----------GCCGATG---------GAGGAGGAGGAG-------------GAGTCCTGGAGCCAAAAAGTAGCAGTCCACCAGAA---CCCAAGAGGAAGGAGGCTGGAGGCAGTCGGTGAGTAG-AT-GA------------G--------------------------CGAGG--------------------------------------------------------------------G----------------TCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTCACAATCCTCCTGCTAA-------------CCGAAG---------A--TC--T--TTCTCTCTATCTTTCAGTGAATCTGCGCCTCTCGACCTTTCGTTT---CGACGATCTCCCATCTCCATCTTGCAGCATCGACAGCGGCATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................GATG---------GAGGAGGAGGAG-------------GA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18120.081000001
droWil2
CAAGGAAACGGCATCATC-------------------------ATCTGCCACATCGGAGCAGCCAACG---------G------------------------CTGCAGCTAAACCAAGG---AGCAGTCCCTCGGAGGGAGTAAAACGCAAAGAAGCCACTGGCAGTCGGTAAGTTA-AA-CC--------------------------------------GTTAGA--------------TAAC---------------------------------------------------------------------CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTTAAAAG-CAATCTGTAA-------------TGCGA-----------------------GTTCCTTCTACTAGTGAAACGGTTCCATTGGATCTCTCATTGTCCCGTCGTTCGCCCATC---------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............ATCATC-------------------------ATCTGCCACATCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACGGTTCCATTGGATCTCT..................................................2411.00110000
droVir3
ACGCCCACGGCCACGCCCAATCCAATGGCCAGCAACAGCAGCCAGCAGCA-----------GCCGGGCCTGCCCGCACAGGAGCCAGAGCGTTCAAGCGGCATGGAGCCGGAACCCAAG---AGCAGTCCGCCGGAG---CCGAAGCGTAAGGAAGCCGGCGGCACACGGTACGTTG-CA-ACGG----------------------------------------GC--------------T---------------------------------------AAGCT-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTA-AAT-T----------------------------CCTCTATTAA--TC--C--CTCTCTCCCTCCCGCAGTGAGACTACGCCGCTGGATCTGTCGCTG---CGCCGCTCGCCAATCGCCGCG---------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................GCCTGCCCGCACAGGAGCCAGAGCGTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002000000000000000000000000000000000000000000000000000000000000002
...............................................................CGGGCCTGCCCGCACAGGAGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000100000000
.....................................................................................AGAGCGTTCAAGCGGCATGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................GGAACCCAAG---AGCAGTCCGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGGATCTGTCGCTG---C.........................................1811.001000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATCTGTCGCTG---CGCC......................................2011.001010000000000000000000000000000000000000000000000000000000000000
droMoj3
GCGCCCC--AGCGCCAGC-------------------------AACGT-C-----------C----------------------------------------CGGAGACGGAGTCCAAG---ACCAGTCCGCCGGAG---CCCAAACGCAAGGAGGCCAGTGGCATGCGGTAAGTCC-AT-ACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCCATAAGTAAACCAAACTTACCCT------CCCCT--------------TGTAATCGCCCTCACAGCGATACCACGCCCCTAGACCTATCCCTA---CGTCGCTCGCCCATTTCGCCG---------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCT------CCCCT--------------TGTAATCGCCCTCACAG.........................................................................2711.001010000
droGri2
TCGTCCAACTCCTGTGAG-------------------------CATT---------------------------------------------TCGAGCAACCTGGAAACTGAACCCAAG---AAAAGTCCAGCAGAA---CCCAAGCGCAAGGAAACAAGCGGCATACGGTAAGTCA-AA-GAAGAT--------TCCAATCAAATT---------CAGGAATTAAA--------------AAGTAATTA-------------------------------AAAATAAGCAAAAATTATAATTATTCAATTTTCCAACGT----TCAT----------------------------------------------------------------------------------CAGAAGATCATCAAAAAACTCTCG--------------------ATTTATGATAAGTTTAAATATAGAAAGGA--G---------AATAA----TCGTTCGTGTCCTTA----------------------------------------AATTGAACATCCC------------------------------------------CTTTTTTAACGTACTTGCAGTGAGACGACGCCACTGGATTTATCGCTA---AGACGCTCGCCAATCGC-------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................G---AAAAGTCCAGCAGAA---CCCAAGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCGCTA---AGACGCTCGCC...............................2011.00110

Generated: 05/19/2015 at 04:35 AM