ID:

dsi_18706

Coordinate:

3r:4351299-4351448 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-37.5	-37.5	-37.4

Flybase annnotation

exon [3r_4351076_4351298_+]; CDS [3r_4351076_4351298_+]; intron [3r_4351299_4354419_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGCCTATCTCAAGCCGATGCTCCAGCGGGACTTTATCACATTGCTGCCAAGTGAGTGCCTGTCTATTGCCACCTGAGATAACCAGTCGAGGTGGAGAACAACATATCAATCTGAACTTTATCAGTGCCAGGCTAATTGGGAGTTTCAGATTGGGTGACCTATGAGGGAGTAGATCAATACGAACTAGGCTTTTTTGTCTTAAGTATCATCATTATTCGTTTAAATTTTTGATAACTTCTGTTTATCTGAC ************************************************..(((.((((((((((((((((((..(((.....))).)))))).......(((.(((((((((((((..(((((.........)))))))).))))))))))))).(((....))).......))))).))..))))).)))...****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	M025 embryo	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
...............................................................................................................................................................................AATACGAACTAGGCTTTTTTG......................................................	21	0	1	2.00	2	2	0	0	0	0	0	0	0
..................................................GTGAGTGCCTGTCTATTGCCACCTGAG.............................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0
..............................................................................................................................................................................CAAGACGAACGTGGCTTTTT........................................................	20	3	6	0.17	1	1	0	0	0	0	0	0	0
...........................................................................................................GATTTGAACTTTAACAGTGC...........................................................................................................................	20	3	7	0.14	1	0	0	1	0	0	0	0	0
..........................................................................................................................................................................AGATCGATACGAATAAGGC.............................................................	19	3	12	0.08	1	0	0	0	1	0	0	0	0
..............................................................................................................................CCAGGTTAATAGGGAG............................................................................................................	16	2	16	0.06	1	0	0	0	0	1	0	0	0
..................................................................................................................................................................................ACAAACTAGGCCCTTTTGT.....................................................	19	3	16	0.06	1	0	0	0	0	0	1	0	0
.................................................................................................................AACTCTCTCAGGGCCAGGC......................................................................................................................	19	3	18	0.06	1	0	0	0	0	0	0	0	1
...................................................................................................AACATATCCATCTGACC......................................................................................................................................	17	2	18	0.06	1	0	0	0	0	0	0	1	0

Anti-sense strand reads

ACGGATAGAGTTCGGCTACGAGGTCGCCCTGAAATAGTGTAACGACGGTTCACTCACGGACAGATAACGGTGGACTCTATTGGTCAGCTCCACCTCTTGTTGTATAGTTAGACTTGAAATAGTCACGGTCCGATTAACCCTCAAAGTCTAACCCACTGGATACTCCCTCATCTAGTTATGCTTGATCCGAAAAAACAGAATTCATAGTAGTAATAAGCAAATTTAAAAACTATTGAAGACAAATAGACTG ****************************************************..(((.((((((((((((((((((..(((.....))).)))))).......(((.(((((((((((((..(((((.........)))))))).))))))))))))).(((....))).......))))).))..))))).)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs
.................................................................................................................TTGAGAGAGTCCCGGTCCG......................................................................................................................	19	3	18	1.00	18	18	0	0
..................................................................................................................TGAGATAGTCCCGGTCCG......................................................................................................................	18	2	1	1.00	1	1	0	0
.................................................................................................................TTGAGATAGTCCCGGTCCG......................................................................................................................	19	2	1	1.00	1	1	0	0
.............................................................................................................................................................................................AAAAAACAGAAGTCATGGT..........................................	19	2	2	0.50	1	0	1	0
..GTATGGAGTTCGGCTACGACG...................................................................................................................................................................................................................................	21	3	3	0.33	1	1	0	0
.......................................TAACGACGGTTCGCTC...................................................................................................................................................................................................	16	1	3	0.33	1	1	0	0
..GGACAGAGTTCTGCTA........................................................................................................................................................................................................................................	16	2	20	0.10	2	0	0	2
.................................................................................................................TTGAGAGAGTCTCGGTCCG......................................................................................................................	19	3	20	0.05	1	1	0	0
........................................................................TAATCTATTGGTCAGC..................................................................................................................................................................	16	2	20	0.05	1	0	0	1

Generated: 04/24/2015 at 02:34 AM