ID:

dsi_1869

 Coordinate:

x:19904351-19904500 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.5 -13.2 -13.2 -12.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
mature
star
  1. 2l:20744612-20744629 -
  2. dsi_8225  2l:20897503-20897520 -
  3. 2l:21332327-21332344 -
  4. 2l:23164652-23164669 -
  5. 2r:790248-790265 -
  6. 2r:2426504-2426521 -
  7. 2r:2578518-2578535 -
  8. 3l:23978628-23978645 -
  9. 3r:5337411-5337428 -
  10. x:19887864-19887881 -
  11. dsi_1869  x:19904455-19904472 -
  12. x:20304922-20304939 -
  13. x:20416869-20416886 -
  14. x:20812863-20812880 -
  15. node_101820:3155-3172 -
  16. node_13788:8347-8364 -
  17. node_22030:5473-5490 -
  18. node_89031:7695-7712 -
  19. node_7842:2669-2686 -
  20. node_47470:5998-6015 -
  21. 2l:19658602-19658619 +
  22. 2l:21018333-21018350 +
  23. 2l:22313311-22313328 +
  24. 2l:23529203-23529220 +
  25. 2r:906927-906944 +
  26. 2r:2090514-2090531 +
  27. 2r:2106155-2106172 +
  28. 2r:2131721-2131738 +
  29. 2r:2147362-2147379 +
  30. 2r:2429385-2429402 +
  31. 2r:3244160-3244177 +
  32. 3l:22898064-22898081 +
  33. 3l:23123726-23123743 +
  34. 3l:23284376-23284393 +
  35. 3l:24149008-24149025 +
  36. 4:766265-766282 +
  37. 4:998988-999005 +
  38. node_62956:1913-1930 +
  39. node_62956:19491-19508 +
  40. node_39788:9248-9265 +
  41. 3l:22789875-22789892 +
  42. 4:811246-811263 +
  43. x:19695969-19695986 +
  44. x:20501496-20501513 +

Sense Strand Reads

CAACCTTCTAGCTTTTATTGTTCCTGAGATCTCGAGGTTCATAGGGACAGACGGACATGGTCAAGAATATATATATTTTATATAGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTCAACGAATCTAGTATACCCTTTTACACTACGCGTAATGGGCATAAAAACATCAAGGCTAAAAAAAACTTTTTTTTTACAGATCCATATTTAAACCAATTTTAATGTCGAGATAATCTATACAAGTCCAAA
******************************************************************************......((................((((((((((........................................)))))))))).............))************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR902008
ovaries
 M025
embryo
 M024
male body		 M053
female body
 SRR902009
testis
 GSM343915
embryo
...................................................................................................................................................TACGCGTAATGGGCATAAAAACATCAAGGC......................................................................... 30 0 1 7.00 7 5 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TATATAGTCGGAAACGCT.......................................................................................................................................................... 18 0 20 4.10 82 0 0 0 0 82 0 0 0 0 0 0 0 0
.............................................................................TTATATAGTCGGAAACGC........................................................................................................................................................... 18 0 20 3.90 78 0 0 0 0 0 0 78 0 0 0 0 0 0
........................TGAGATCTCGAGGTTCATAGGGACA......................................................................................................................................................................................................... 25 0 1 3.00 3 1 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CCAATTTTAATGTCGAGATAATCTA............ 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
........................TGAGATCTCGAGGTTCATAGGGAC.......................................................................................................................................................................................................... 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.........................................TAGGGACAGACGGACATGGTCAAGAA....................................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
........................TGAGATCTCGAGGTTCATAGGGACAGA....................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TAAACCAATTTTAATGTCGAGAT.................. 23 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0
..................................................................ATATATATATTTTATATAGTCGGA................................................................................................................................................................ 24 0 5 1.80 9 1 0 0 7 0 0 0 1 0 0 0 0 0
......................................................................................................TGCCTGTTACATACTTTTCAACGAA........................................................................................................................... 25 0 20 1.50 30 30 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TACACTACGCGTAATGGGCATAAAAAC................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................CGGACATGGTCAAGAATATATATA............................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AATTTTAATGTCGAGATAATCTATACA........ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................AGGTTCATAGGGACAGACGGACATGGT............................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................CGGACATGGTCAAGAATATATATATTT............................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TACACTACGCGTAATGGGCATAAAAACA................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTTTTACAGATCCATATTTAAACCAA................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AAACCAATTTTAATGTCGAGATAATCTA............ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................GGGACAGACGGACATGGTCAAGAAT...................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTTTTACAGATCCATATTTAAACCAA................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TGGGCATAAAAACATCAAGGCTAAAAAAA................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TGGGCATAAAAACATCAAGGC......................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AAAACATCAAGACTTAAAAAAA................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................GCCTGAGATCTCGAGGTTCATAG.............................................................................................................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATGTCGAGCTAATCTCTAAAAG...... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................CATGGTCAAGAATATATATATTTTA.......................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................ATATATATATTTTATATAGTCGGAA............................................................................................................................................................... 25 0 5 1.00 5 0 0 0 2 0 0 0 3 0 0 0 0 0
.................................................................................................................................................................................................................TAAACCAATTTTAATGTCGAGATAAT............... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
........................TGAGATCTCGAGGTTCATAGGGACG......................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TCAAGGCTAAAAAAAACTTTTTTTT....................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................TTCATAGGGACAGACGGACATGGTCAA.......................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TGGGCATAAAAACATCAAGGCTAAAAA................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................CCCTGAGATCTCGAGGTTCATAGGG............................................................................................................................................................................................................ 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................TATATATATTTTATATAGTCGGAAACGC........................................................................................................................................................... 28 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 2 0
................................................................................................................................................................................................................................GTCGAGATAATCTATACA........ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................TTTAATGTCGAGATAATCT............. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................TTAAACCAATTTTAATGTCGA..................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................TCAAGGCTAAAAAAAAC............................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................TTACACTACGCGTAATGGGCATAAAAAC................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................TCTCGAGGTTCATAGGGAC.......................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AAACCAATTTTAATGTCGAG.................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................TTTAAACCAATTTTAATGTCGAGATA................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTTCAACGAATCTAGTATACCCTT............................................................................................................. 24 0 20 0.90 18 10 0 0 0 0 0 0 0 0 0 6 2 0
................................................................GAATATATATATTTTATATAGTCGGA................................................................................................................................................................ 26 0 5 0.80 4 0 0 2 1 0 0 0 1 0 0 0 0 0
..................................................................ATATATATATTTTATATAGTCGGAT............................................................................................................................................................... 25 1 5 0.80 4 0 0 0 0 0 0 0 4 0 0 0 0 0
..............................................................................................................ACATACTTTTCAACGAATCTAGTA.................................................................................................................... 24 0 20 0.70 14 8 0 0 6 0 0 0 0 0 0 0 0 0
.......................................................................TATATTTTATATAGTCGGAAACGCT.......................................................................................................................................................... 25 0 3 0.67 2 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................TATATATTTTATATAGTCGGAAACGCT.......................................................................................................................................................... 27 0 3 0.67 2 0 0 0 0 0 0 0 2 0 0 0 0 0
..............................................................................................................................................................................................................................ATGTCGAGCTAATCT............. 15 1 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................ATATATATATTTTATATAGTCGGAAA.............................................................................................................................................................. 26 0 5 0.60 3 1 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................CTGCCTGTTACATACTTTTCAACGA............................................................................................................................ 25 0 20 0.55 11 11 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGGTCAAGAATATATATATTTTATA........................................................................................................................................................................ 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AACATCAAGACTTAAAAAA................................................................. 19 2 6 0.50 3 0 0 0 2 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................AAACATCAAGACTTAAAAAAA................................................................ 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTTCAACGAATCTAGTATACCCTTTT........................................................................................................... 26 0 20 0.45 9 0 9 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TATATAGTCGGAAACGCTTCCTT..................................................................................................................................................... 23 0 20 0.40 8 4 0 0 4 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTTCAACGAATCTAGTATACCCTTTTACA........................................................................................................ 29 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................TATATTTTATATAGTCGGAAACG............................................................................................................................................................ 23 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TATATATTTTATATAGTCGGAAACGC........................................................................................................................................................... 26 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................CTGCCTGTTACATACTTTTCAACGAA........................................................................................................................... 26 0 20 0.30 6 0 0 6 0 0 0 0 0 0 0 0 0 0
...................................GATTAATAGGGACAGTCGG.................................................................................................................................................................................................... 19 3 14 0.29 4 0 3 0 1 0 0 0 0 0 0 0 0 0
................................................................................................TCCTTCTGCCTGTTACATACTTTTCAAC.............................................................................................................................. 28 0 20 0.25 5 2 0 0 2 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................CAAAACATCAAGACTTAAAAAAA................................................................ 23 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................CATATTTTATATAGTCGGAAAAGCTTCCTT..................................................................................................................................................... 30 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................TGAGATCTCGAGGTTCATATGGACA......................................................................................................................................................................................................... 25 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ACAGATCCAAATTTAAAC.................................... 18 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TATTTTATATAGTCGGAAACGCT.......................................................................................................................................................... 23 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AAAACATCAAGACTTAAAAAAAA............................................................... 23 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TGTTACATACTTTTCAACGAATCTAGTA.................................................................................................................... 28 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TATTTTGTATAGTCGGAAACGCTTCCT...................................................................................................................................................... 27 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................ATATATATATTTTATATAGTCGGAAAC............................................................................................................................................................. 27 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................AAAACATCAAGACTTAAAAA.................................................................. 20 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................AGACGATCATGGTGAAGAAT...................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................ACATACTTTTCAACGAATCTAGTAT................................................................................................................... 25 0 20 0.15 3 0 0 0 0 0 3 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATGTCGAGCTAATCTC............ 16 2 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CTGTTACATACTTTTCAACGAAT.......................................................................................................................... 23 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0 0
..................................................................ATATATATATTTTATATAGACGGAAA.............................................................................................................................................................. 26 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................GTATATATATTTTATATAGTCGGAA............................................................................................................................................................... 25 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................ATATATATATTTTATATAGTCGGT................................................................................................................................................................ 24 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................AAACATCAAGACTTAAAAAAAA............................................................... 22 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................ATATATATATTTTATATAGTCGGAC............................................................................................................................................................... 25 1 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................GAGATCTCGAGGTTCATA............................................................................................................................................................................................................... 18 0 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................ATATATATATTTTATATAGTCGGAAT.............................................................................................................................................................. 26 1 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................TTTATATAGTCGGAAACGCTTCCT...................................................................................................................................................... 24 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTCCTTCTGCCTGTTACATACTTTTC................................................................................................................................. 26 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0
.....................................................................................................CTGCCTGTTACATACTTTTCAACGAAT.......................................................................................................................... 27 0 20 0.10 2 0 0 0 1 0 0 0 1 0 0 0 0 0
...............................................................................................TTCCTTCTGCCTGTAACATACTT.................................................................................................................................... 23 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTATATAGTCGGAAAAGCTTCCTT..................................................................................................................................................... 24 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................TATATAGTCGGAAAAGCTTCCTTCT................................................................................................................................................... 25 1 20 0.10 2 0 0 1 1 0 0 0 0 0 0 0 0 0
...........................................................................TTTTGCCTAGTCGGAAACGCTTCC....................................................................................................................................................... 24 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................TATATAGTCGGAAAAGCTTCCTT..................................................................................................................................................... 23 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................TATATAGTCGGAAAAGCTTCCTTC.................................................................................................................................................... 24 1 20 0.10 2 0 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TTATATAGTCGGAAAAGCTTCCTTC.................................................................................................................................................... 25 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................TTTTATATAGTCGGA................................................................................................................................................................ 15 0 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................TTTATATAGTCGGAAAAGCTTCCTTC.................................................................................................................................................... 26 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0
................................................................................TATAGTCGGAAACGCTTCCTTCT................................................................................................................................................... 23 0 20 0.10 2 0 0 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................CATCAAGGTTCAAAAAAA................................................................ 18 2 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................TGAGATCTCGAGGTT................................................................................................................................................................................................................... 15 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............TTTATTGTTCCTGAGA............................................................................................................................................................................................................................. 16 0 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................GTTCAACGAATCTAGTATACCCTTTCACAA....................................................................................................... 30 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................GGTTCATAGGGGCTGA....................................................................................................................................................................................................... 16 2 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................ACATCAAGACTTAAAAAA................................................................. 18 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TATATTTTATATAGT.................................................................................................................................................................... 15 0 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................TATAGTCGGAAACGCTTCCTT..................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................TTTATATAGTCGGAAAAGCTTCCT...................................................................................................................................................... 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................CGGCCTGTTACATACTTTTCAACGAAT.......................................................................................................................... 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................TATATAGTCGGAGACGCTTCCTTCT................................................................................................................................................... 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTCCTTCTGCCTGTTACATACTTTTCAA............................................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................TTCTGCCTGTTACATACTTTTCAACGA............................................................................................................................ 27 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............................ATCACCAGGTTAATAGGGA........................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TTATATAGTCGGAAACGCTTCCTTC.................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ACATACTTTTCAACGAATCTAG...................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................TTTATATAGTCGGAAACGCT.......................................................................................................................................................... 20 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................TATATAGTCGGAAAAGCTTCCTTCTGC................................................................................................................................................. 27 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................CTTCTGCCTGTTACATACTTTTCAA............................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................TCTGCCTGTTACATACTTTTCAACGAAT.......................................................................................................................... 28 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................CGGAAACGCTTCCTTCTGCCTGTTACATACT..................................................................................................................................... 31 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTATATAGTCGGAAACGCGTCCT...................................................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TATATAGTCGGAAACGCTTCCTTCT................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TATAGTCGGAAACGCTTCCTTCTGC................................................................................................................................................. 25 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................CATCAAGACTTAAAAAAA................................................................ 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TTTTCAACGAATCTAGTATACCCTT............................................................................................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................CTTCTGCCTGTTACATACT..................................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CTGCCTGTTACATACTTTTCAA............................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................TTAGATCTCGAGGTT................................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CTGTTACATACTTTTCAACGAATCT........................................................................................................................ 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTATATAGTCGGAAACGCTTCCTT..................................................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................GTTCCTAAGATCTCGAGGT.................................................................................................................................................................................................................... 19 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................TTTATATAGTCGGAAACGCTTCCTTC.................................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTTGGAAGATCGAAAATAACAAGGACTCTAGAGCTCCAAGTATCCCTGTCTGCCTGTACCAGTTCTTATATATATAAAATATATCAGCCTTTGCGAAGGAAGACGGACAATGTATGAAAAGTTGCTTAGATCATATGGGAAAATGTGATGCGCATTACCCGTATTTTTGTAGTTCCGATTTTTTTTGAAAAAAAAATGTCTAGGTATAAATTTGGTTAAAATTACAGCTCTATTAGATATGTTCAGGTTT
*************************************************************************......((................((((((((((........................................)))))))))).............))****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR902008
ovaries
 M025
embryo
 M024
male body		 M053
female body
 GSM343915
embryo
.......................................................................................................CGGACAATGTATGAAAAGTTGCTT........................................................................................................................... 24 0 20 9.25 185 0 153 0 0 0 31 0 0 0 0 1
................................................................................................AGGAAGACGGACAATGTATGAAAAGT................................................................................................................................ 26 0 20 7.50 150 0 66 40 44 0 0 0 0 0 0 0
..........................................................................................TTGCGAAGGAAGACGGACAATGTAT....................................................................................................................................... 25 0 20 6.35 127 121 4 0 0 2 0 0 0 0 0 0
..........CGAAAATAACAAGGACTCTAGAGC........................................................................................................................................................................................................................ 24 0 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0
.....................................................................................................................AAAGTTGCTTAGATCATATGGGAAAAT.......................................................................................................... 27 0 20 2.10 42 0 0 42 0 0 0 0 0 0 0 0
...................................................................................................................GAAAAGTTGCTTAGATCATATGGGAAAAT.......................................................................................................... 29 0 20 1.95 39 0 0 19 20 0 0 0 0 0 0 0
.......................................................................................................................AGTTGCTTAGATCATATGGGAAAAT.......................................................................................................... 25 0 20 1.95 39 7 0 0 32 0 0 0 0 0 0 0
.TTGGAAGATCGAAAATAACAAGGAC................................................................................................................................................................................................................................ 25 0 8 1.88 15 0 0 12 2 1 0 0 0 0 0 0
...............................................................................................AAGGAAGACGGACAATGTATGAAAA.................................................................................................................................. 25 0 20 1.65 33 0 0 0 0 33 0 0 0 0 0 0
...................................................................................................................GAAAAGTTGCTTAGATCATATGGG............................................................................................................... 24 0 20 1.50 30 0 0 30 0 0 0 0 0 0 0 0
....................................................................................................AGACGGACAATGTATGAAAA.................................................................................................................................. 20 0 20 1.45 29 28 0 0 0 1 0 0 0 0 0 0
......AGATCGAAAATAACAAGGACTCTAG........................................................................................................................................................................................................................... 25 0 7 1.43 10 5 1 0 1 1 0 0 0 0 2 0
......................................................................................................................AAGTTGCTTAGATCATATGGGAAAATG......................................................................................................... 27 0 20 1.05 21 0 0 10 11 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CTATTAGATATGTTCAGGTTT 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..........CGAATATAACAAGGACTCTAGAGC........................................................................................................................................................................................................................ 24 1 5 1.00 5 0 0 4 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................AAAAAATAACGTCTAGGTGTAAAT....................................... 24 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
......................GGACTCTAGAGCTCCAAGTATCCCT........................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................ACAAGGACTCTAGAGCTCCAAGTATCCC............................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................TTGCGAAGGAAGACGG................................................................................................................................................ 16 0 20 0.95 19 19 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ATGAAAAGTTGCTTAGATCATATGGG............................................................................................................... 26 0 20 0.85 17 0 0 17 0 0 0 0 0 0 0 0
....................................................................................................AGACGGACAATGTATGAAAAGTTGCTT........................................................................................................................... 27 0 20 0.85 17 2 0 0 0 0 4 0 2 0 9 0
......................................................................................................ACGGACAATGTATGAAAAGTTGCT............................................................................................................................ 24 0 20 0.65 13 0 0 2 0 0 0 11 0 0 0 0
...............................................................................................AAGGAAGACGGACAATGTATGAAAAGT................................................................................................................................ 27 0 20 0.60 12 0 0 4 0 8 0 0 0 0 0 0
...........................................................................................TGCGAAGGAAGACGGA............................................................................................................................................... 16 0 20 0.60 12 12 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AAGTTGCTTAGATCATATGGGAAA............................................................................................................ 24 0 20 0.55 11 0 0 0 11 0 0 0 0 0 0 0
...................................................................................................AAGACGGACAATGTATGAAAAGTTGCTT........................................................................................................................... 28 0 20 0.45 9 0 6 0 1 0 0 1 0 0 1 0
.....................................................................................................GACGGACAATGTATGAAAAGTTGCTT........................................................................................................................... 26 0 20 0.45 9 1 0 5 0 0 2 0 0 0 1 0
.........TCGAAAATAACAAGGACTCTAG........................................................................................................................................................................................................................... 22 0 7 0.43 3 3 0 0 0 0 0 0 0 0 0 0
....................................................................................................AGACGGACAATGTATGAAAAGTTGCT............................................................................................................................ 26 0 20 0.40 8 0 0 0 0 7 1 0 0 0 0 0
................................................................................................AGGAAGACGGACAATGTATGAAAAGTTG.............................................................................................................................. 28 0 20 0.40 8 0 0 0 8 0 0 0 0 0 0 0
......................................................................................................ACGGACAATGTATGAAAAGTTGCTT........................................................................................................................... 25 0 20 0.40 8 0 0 0 8 0 0 0 0 0 0 0
.................................................................................................GGAAGACGGACAATGTATGAAAA.................................................................................................................................. 23 0 20 0.40 8 0 0 0 6 0 0 0 0 0 2 0
..TGGAAGATCGAAAATAACAAGGACT............................................................................................................................................................................................................................... 25 0 8 0.38 3 0 0 1 0 2 0 0 0 0 0 0
................................................................................................AGGAAGCCGGACAATGTATGAAAAGT................................................................................................................................ 26 1 20 0.35 7 0 0 7 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ATTTTTTTTGCAAACACAATGTCT................................................. 24 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................AAAAGTTGCTTAGATCATATGGGAAAAT.......................................................................................................... 28 0 20 0.30 6 1 0 0 5 0 0 0 0 0 0 0
.......................................................................................................CGGACAATGTATGAAAAGTTGCT............................................................................................................................ 23 0 20 0.30 6 0 0 0 0 3 0 3 0 0 0 0
..................................................................................................................TGAAAAGTTGCTTAGATCATA................................................................................................................... 21 0 20 0.30 6 0 0 0 0 0 0 0 3 3 0 0
...................................................................................................................GAAAAGTTGCTTAGATCATATGGGAA............................................................................................................. 26 0 20 0.30 6 6 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAAAAAAAAAGTCTCGGTAT........................................... 20 2 7 0.29 2 0 0 1 0 1 0 0 0 0 0 0
.......................................................................................................................AGTTGCTTAGATCATATGGGAAAATG......................................................................................................... 26 0 20 0.25 5 0 0 2 3 0 0 0 0 0 0 0
.................................................................................................................ATGAAAAGTTGCTTAGATCATATG................................................................................................................. 24 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0
................................................................................................AGGAAGCCGGACAATGTATGAAAA.................................................................................................................................. 24 1 20 0.25 5 3 0 0 0 1 0 1 0 0 0 0
...................................................................................................................GAAAAGTTGCTTAGATCATATGGGAAAA........................................................................................................... 28 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0
....................................................................................CAGCCTTTGCGAAGGAAGACGGACAAT........................................................................................................................................... 27 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0
...................................................................................TCAGCCTTTGCGAAGGAAGA................................................................................................................................................... 20 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGCTTAGATCATATGGGAAAATGT........................................................................................................ 24 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................AAAGTTGCTTAGATCATATGGGAA............................................................................................................. 24 0 20 0.20 4 0 0 0 4 0 0 0 0 0 0 0
....................................................................................................AGACGGACAATGTATGAAAAGTTGC............................................................................................................................. 25 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0
...........................................................................................TGCGAAGGAAGACGGACAATGTAT....................................................................................................................................... 24 0 20 0.15 3 0 0 0 2 0 0 0 0 0 1 0
....................................................................................................AGACGGACAATGTATGAAAAGTTG.............................................................................................................................. 24 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0
.....................................................................................................................AAAGTTGCTTAGATCATATGGGAAA............................................................................................................ 25 0 20 0.15 3 2 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TGAAAAGTTGCTTAGATCATATGGGAA............................................................................................................. 27 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TGAAAAGTTGCTTAGATCATATGGGA.............................................................................................................. 26 0 20 0.15 3 0 0 2 1 0 0 0 0 0 0 0
......................................................................................................................AAGTTGCTTAGATCATATGGGA.............................................................................................................. 22 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0
....................................................................................................AGACGGACAATGTATG...................................................................................................................................... 16 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
...............................................................................................................GTATGAAAAGTTGCTT........................................................................................................................... 16 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
...............................................................................................AAGGAAGACGGACAATGTATGA..................................................................................................................................... 22 0 20 0.15 3 2 1 0 0 0 0 0 0 0 0 0
................................................................................................AGGAAGACGGACAATGTAT....................................................................................................................................... 19 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0
................................................................................................AGGAAGACGGACAAGGTATGAAAAGT................................................................................................................................ 26 1 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0
........ATCGAAAATAACAAGGACTCTAG........................................................................................................................................................................................................................... 23 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
...GGAAGATCGAAAATAACAAGGACTCTAG........................................................................................................................................................................................................................... 28 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.....AAGATCGAAAATAACAAGGACTCTAG........................................................................................................................................................................................................................... 26 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
...GGAAGATCGAAAATAACAAGGACTCTA............................................................................................................................................................................................................................ 27 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
....GAAGATCGAAAATAACAAGGACTCTAG........................................................................................................................................................................................................................... 27 0 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0
.TTGGAAGATCGAAAATAACAATGAC................................................................................................................................................................................................................................ 25 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
...GGAAGATCGAAAATAACAAGGAC................................................................................................................................................................................................................................ 23 0 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
.TTGGAAGATCGAAAATAACAAGGACT............................................................................................................................................................................................................................... 26 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
.........TCGAAAATAACAAGGACT............................................................................................................................................................................................................................... 18 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
.................AACAAGGACTCTAGAGC........................................................................................................................................................................................................................ 17 0 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
.TCGGAAGATCGAAAATAACAAGGAC................................................................................................................................................................................................................................ 25 1 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................AGGAAGACGGACAATGTATGAAAAGTT............................................................................................................................... 27 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
................................................................................................AGGAAGACGGACAATGTATGAAAAGTTGCT............................................................................................................................ 30 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
......................................................................................................................AAGTTGCTTAGATCATATGGGAAAA........................................................................................................... 25 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0
......................................................................................................CCGGACAATGTATGAAAAGTTGCTT........................................................................................................................... 25 1 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0
................................................................................................AGGAAGACGGACAATGTATGAAA................................................................................................................................... 23 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................AGATCATATGGGAAAATG......................................................................................................... 18 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGCTTAGATCATATGGGAA............................................................................................................. 19 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GAAAAGTTGCTTAGATCATATGGGAAA............................................................................................................ 27 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
..................ACAAGGACTCTAGAGC........................................................................................................................................................................................................................ 16 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AAAAAAAAAAATGTCTAGGT............................................. 20 2 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................AAAAGTTGCTTAGATCATATGGG............................................................................................................... 23 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................GCCGGACAATGTATGAAAAGTTGCTT........................................................................................................................... 26 1 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0
...................................................................................................................GAAAAGTTGCTTAGATCATAT.................................................................................................................. 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................AGGAAGACGGACAATGTATGAAAAGTTGCTT........................................................................................................................... 31 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
.............AAATAACAAGGACTCTAG........................................................................................................................................................................................................................... 18 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AGGGCCGATTTTTTTTGA.............................................................. 18 2 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0
.TTGGAAGATCTAAAAGAACAAGGAC................................................................................................................................................................................................................................ 25 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AAAAAAAAAGTCTCGGTAT........................................... 19 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0
.........TCGAAAATAAAAAGGACTCTAGAGC........................................................................................................................................................................................................................ 25 1 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TTATATATGTTCAGGT.. 16 1 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0
..TGGTAGATCGAAAATAACAAGGAC................................................................................................................................................................................................................................ 24 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTTAAAAAAAAAATGGTTAGGT............................................. 22 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................AGGAAGACGGACAATGTATGAA.................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................GGACAATGTATGAAAAGTTGCT............................................................................................................................ 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................TGCTTAGATCATATGGGA.............................................................................................................. 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTGCGAAGGAAGACGGACAATGT......................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................CCTTTGCGAAGGAAGACGGACAATGT......................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GAAAAGTTGCTTAGATCATAGGGGAAAAT.......................................................................................................... 29 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...............................................GTCTGCCTGTACCAGT........................................................................................................................................................................................... 16 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ATGAAAAGTTGCTTAGATCATATGGGAAAAT.......................................................................................................... 31 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................AGTTTGGTGAAAACTACAGC...................... 20 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AGGTGCTTAGATCATATGGGAAAAT.......................................................................................................... 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................AAGGAAGACGGACAATGTATG...................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTGCGAAGGAAGACGGACAATGTATGAAAA.................................................................................................................................. 30 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................AGGAAGACGGACAATGTATG...................................................................................................................................... 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................AGGAAGACGGACAAGGTATGAAAAGG................................................................................................................................ 26 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................AAGTTGCTTAGATCATAGGGGAAAA........................................................................................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................GAAGACGGACAATGTATGAAAA.................................................................................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................CAGACGGACAATGTATGAAAAGTTGCTT........................................................................................................................... 28 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................TTTGCGAAGGAAGACGGACAAT........................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TGAAAAGTTGCTTAGATCATATGGGAAA............................................................................................................ 28 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................GAAGGAAGCCGGACAATGTATGAAAA.................................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................AGGAAGACGGACAATGTATGAAAAGGT............................................................................................................................... 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AAAAAAATGTTCAGGTAT........................................... 18 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AGTTGCTTAGATCATATGGGA.............................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................GAAGACGGACAATGTATGAAAAGTTGCTT........................................................................................................................... 29 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CCGCTTATCTTTGAAAAAAA........................................................ 20 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................GAAGACGGACAATGTATGAAAAGTTG.............................................................................................................................. 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TGAAAAGCTGCTTAGATCATATGGGAA............................................................................................................. 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................GTATGAAAAGTTGCTTAGATCAT.................................................................................................................... 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................AGGAAGACGGACAATGTATGAAAAGTTGC............................................................................................................................. 29 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................TTGCGAAGGAAGACGGACAAT........................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................AAGGAAGACGGACAATGTATGAAA................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................GACAATGTATGAAAAGTTGCTT........................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTGCTTAGATCATATGGGAAA............................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................AGACGGACAAGGTATGAAAAGTTGCTT........................................................................................................................... 27 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................TTGCGAAGGAAGACGGACAA............................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................AAGGAAGACGGACAATGTATGAAAAGTTG.............................................................................................................................. 29 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AGTTGCTTAGATCATATGGGAAA............................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ATGAAAAGTTGCTTAGATCATATGG................................................................................................................ 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................TGCGAAGGAAGACGGACAATGTATG...................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
................TAACAAGGACTCTAG........................................................................................................................................................................................................................... 15 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:19904301-19904550 - dsi_1869 CAACC-TTCTAGCTTTTATTGTTCCTGAGATCTC----GAGGTTCATAGGGACAGACGG--------ACAT----------------------------GGTCAAGAAT-----ATATATATTTTATATAGTCGGAAACGCTTCCTTCTGCCTGTTACATACTT-------TTCAACGAATCTAGTATACCCT-------------TTT-ACAC------TACGCGTAATGGGCATAAAAACATCAAGGCTAA---------AAA--AA-AC------------------TTTTTTTTT------------------------------------------A-----------------------C-------------------------AGATCCATA-----TTT--------------------A----------------------------------------------------------A-ACCAATTTTAATGTCGAGATAATCTATACAAGT-----CCAAA
droSec2 scaffold_8:3478457-3478678 - CAACC-TTCTAGCTTTTATTGTTTCTGAGATCTC----GAGGTTCATACGGACAGACGG--------ACAT----------------------------AGTCAAGAAT-----ATATATAATTTATATAGTCGGAAACGCTTCATTCTGCCTGTTACATACTT-------TTCAGCGAATCTAGTATACCCT-------------TTT-ACAC------TACGCGTAATGGGCATAAAAACATTAAGGCTAA---------AAA--AA-A--------------------------------------------------------------CTTTTTTTA-----------------------C-------------------------ATATCCATA-----TTT--------------------A----------------------------------------------------------A-AC--------------------------CAAGT-----CCAAA
dm3 chrX:22095946-22096211 + CAACC-TTCTAGCTTTTATAGTTCCTGAGATCTC----GACGTTTATACGGACGG------------ACATGACCAGTTCGGCTCGGCT-ATCGATCCTGATCAAGGTT-----ATATATACCTTATGTGGTCGGAAACGCTTTCTTCTACCTGCTACATACTT-------TTCAACGAATCTACTATACCCT-------------TTT-AGTC------TACGAGTAACGGGCAAATAGATC-------------------------------GCTCTATGT--------------------TA------TCAGTTTC-------------------------------TTTTGCTAGGGA-------------------------------ACGCAAA-----TTT--------------------C----------------------------------------------------------A-ACCACAATAAATGG----AAAATCTATTAAAAT-----C----
droEre2 scaffold_4929:21900139-21900377 - CAACA-TTCTAGCTTTTGTAGTTCCTGAG--CGA----GGCGTTCATACGGACAGACAG--------AC-----------------------------TGACAGACGGA-----ATATATACTTTATATGGTCGGAAACGTTTCCTTCTCTTTGTTACATACTT-------TTCAACGAATCTAGTATACCCT-------------TTT-ACTC------CACGAGTAACGGGTATATAT--TAT-----TA-CATCACATCGCAGA-------------CAA--------------------TT------TAT---------------------------------------------------------------------------------------------------------------------------------------------CTGATATGGAT-CTCGCTATAATTTTCGATT-----------------TGATAAAA------CCTGA-----CCAAA
droYak3 v2_chrUn_796:5866-6161 - CAACT-TTCTAGCTTTTGTAGTTCCTGAGATCTC----GACGTTCATACGGACAGACGG--------ACATGGCCAAATCGACTCGGCT-ATTGATCCTGATCAAGAAT-----ATATATACTTTATATGGTCGGAAACGCTTCCTTTTGCCTGTTACATACTT-------TTCAACGAATCTAGTATACCCT-------------TTT-ACTT------TACGAGTAACGGGTATAATTAA-----GTTTAA---------AG-------------------------------------------------------------T-T-------------GCAGCTCAT---------------GAGCACTGCTATTTTTATGAACACAGCTGTACATA-----TTT-------AAACATATATTTTT-AA-----------------------CTACTAA---------------------------------------------AAACTATTTAAATGT-----TAAAA
droEug1 scf7180000409672:4457409-4457683 - CAACT-TTGTATCTGCTATAGTTCCTGAGATCTC----AGCGTTCATACAGACGGACGG----ACGGACATGGCTCCTTCGTCTTCGCT-ATTCACCCTGATCAAGAAT-----ATATGTACTTTATAGGATCGGAAACGCTTCCTTCTGCCTGTTGCATACTT-------TTCAACGAATCTAGTATACCCT-------------TTT-ACTC------TACGAGTAACGGGTATAATTAA-----GAGTAA---------TAA--TT-A---CGTTTATCA--------------------TT------ACGATGCC-------------------------------ATCTGCAAGATAAGG---------------------------------TA-----TTT--------------------A----------------------------------------------------------A-AGCAGAGTTAAT---------------TC-AAA-----GCAGT
droBia1 scf7180000297633:41151-41410 - ------TTCTCGCTCTTTTAGTATCCGAGATCTC----AGCGTTCATACGGACAGACAG--------AC----------CGACTCGGCT-AGTGATCCTGATCAAGAATATAC-ATATATACTTTATGGGATCGGAAACGCTTCCTTCTACCTGTCACATACTT-------TCCGACTATTCCATTATACCCT-------------TTT-ACTC------TACGAGTAACGGGTATAATTGTTTC---------ATTATCTCTCTGA-------------CCA--------------------TT------TCTTTGGC--------------------------------------------------------------------------ATCTATA-----TGT--------------------T----------------------------------------------------------A-ACTAAATTTAATTC----GAAGTTTTTAAAAAT-----ATAAA
droTak1 scf7180000415710:62055-62255 + CAACC-TTCTAGCTTTTGTAGTTTCTGAGATCTG----ACCGTTCATACAGACGGACAG--------AC-----------------------------GGATCAAGAAT-----ATATATACTTTATGGGGTCGGAAACGCTTCCTTCTAGCTGTTACATACTT-------TTTCACGAATCTAGTATACCCT-------------TTT-ACTC------TACGAGTAACGGGTATAAAAAGAAA-----TAA---------AAA--AC-A--------------------------------------------------------------GGATT-------------------------------------------------------------------TTT----------------------------------------------------------------------------------------------------------ACATCAAT-----TTTAA
droEle1 scf7180000491238:34355-34622 + GAAC--TACTAGAA-TTTTAGTTTCCGAGCTCTC----GACTTTCATAG--------------------ATGGCTAGATCGAGTCGGCTGATTAATCCTGATCAAAAAC-----ATATATACTTTTTATGGTCGTAAACGCTTCCTTCTACCTGTTACCTTCCT-------TTCAACGAATACAATTTA----------------------CTC------TTCGAGTAAAGGGTATAACAACCAAA------------CC------------------------------TCGGATAAAACTTAACCAACTTCTTTAGTATAATATC-----------------------ATATCCATAATACTA---------------------------------AA-----TTC--------------------A----------------------------------------------------------C-AACAT---------AAATACATCCCATAC-AAT-----ACAAA
droRho1 scf7180000775385:1122-1367 - CAATC-TTCTAGCTTTTATAGTTTCCGAGATCTC----AGCGTTCATACGGACAGAC----------------------------------------------AAGAAT-----ATATATAATTTATAGGGTCGGAAACGCTTCCTTCTAGCTGTTACATACTT-------TTGCACGAATACAATATACCCT-------------TTT-ACTC------TACGAGTAACGGGTATAAAAATAATAA---TA----A-AC--------------------------------------------------------------------------------------ACAA---------------GTA-----------------------------------------------AAACACAAAATTTCTAAAAAAAAATCCAAAAAGTTGGATTTAAAT-------------------------------------------AGAAAAAGTGCCTACAAAT--G--CTAAA
droFic1 scf7180000454078:186340-186587 + -----------GCTTCTAAAGTTTCCGAGATCTT----GAAGCTCAAAGGGACGAAAAA--------AAATACAATTTTT-------------------TACTAGGAAAATGCAAAAAATCCATTATTGGGTCGGAAATGCTTGCTTCTATCTGTAAAATATTT-------TTTAACAAAAACAAAATATTCTGGTTGACAGTTCTTAT-ACTC------AACAATAAAAT-----------AATAAGAT--------------------A---CT------------------------------------------------------------------------------------------------ACTATTATCTTGACC----ACAGCTGTA-----TTTAAAAGTGTAATATA------------------------------------------------------------------------------------TATATTCTACACAAAA-----ATAAA
droKik1 scf7180000301658:5500-5682 - CAG--------------------------------------------ACGGACAGACGG--------ACATGGCTAGAT---------------------------CAT-----GTATATACTTTATAGGGTCGGAAACGTCTGCTTCACTGCGTTGCAAACTT-------CTGACTGAAATTATAATACCCT-------------GC--------------------AAGGGTATAAAAAGCCCGA-----A----------A---------T-----------------------------------------------------CGAAATTTTTTTTTG-----------------------A-------------------------ATGGCTGCC-----ATT-----------------------------------------TTG--------------------------------TTCA-ACTAAATTT----------------AAAAAAAA-----TCTGT
droAna3 scaffold_12916:5284790-5285034 - CAACT-CGATAGCTTTAAAA----CTGAGAGACT----AGTTTGCGTAGAAACAGACAG--------ACAGGA-----------------GGTGATCCTGATCAAGAAT-----ATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTT-------TTGACCAAAATTATAATACCCT-------------CTG-------------C-----AAGGGTATAATAATAATTC-------TTGATAAAAA---AAAAC---ATTG-GATTTCCCTTCTCTTTCTC------------------------------------------A-----------------------C-------------------------A----AATA-----TCT--------------------G-----------------------------------------AAAAAATTATGAAAT-----------------------------AAAATA-------ATTTA
droBip1 scf7180000392019:21934-22167 - AAATC-CTATAGCTCTAT--CTCTCTGAGCTACA----TGCGTTCATACGGATAGACGG--------ACATGGCTATATCGACTAGGCT-TTTAATCCTGATCAAGAAT-----ATAGATACTTTAAGGGGTCGGATA--ATTCCTTCTCTACGTTACATACAT-------TCACACTACTATAATATACCCT-------------TGT-ACAC------TACGAGTACCGGGTACAAAATTATAA------------------------AA------------------TTCTATTAT------------------------------------------A-----------------------C-------------------------GTAGACAAC-----CTC----------------------------------------------------------------------------------------------------------ATAACAAT-----GTTAA
dp5 Unknown_group_416:7944-8188 - CGTTG-CTCTAGCTCTTATAGTCTTTGAGCTCT--------------------------------------------ATCGACTCGGCT-ATTGACGCTGATCAAGAAT-----ATATATACTTTATGCGGTCGGAAACGTTACCTTCTGGACGTTACACACATCCACTTTTACCGCAAATCTAATATACCTC-------------TAT-ACTCAT----TTTGAGTATCGCGTATAAATAGAGTAATATTAG-TAA-AA---A---A----AA-----------------------------------------------------AAAAAACAATTT--------------------------------------------------------------------T--------------------------------------------------------------AGAAAATTTTTAAATT-----------------TAACTTAACCTAGAAAA-A-----TAAAA
droPer2 scaffold_176:26799-27039 + CGTTG-CTCTAGCTCTTATAGTCTTTGAGCTCT--------------------------------------------ATCGACTCGGCT-ATTGACGCTGATCAAGAAT-----ATATACACTTTATGCGGTCGGAAACGTTACCTTCTGGACGTTACACATATCCACTTTTACCGCAAATCTAATATACCTC-------------TAT-ACTCAT----TTTGAGTATCGCGTATAAATAGAGTAAAATTAG-TAA-AA---A---A------------------------------------------------------------AAAAACGATTT--------------------------------------------------------------------T--------------------------------------------------------------AAAAAATTGTTAAATT-----------------TAACTTAACCTAGAAAA-------ATAAA
droWil2 scf2_1100000004936:493391-493656 - -------TCTAGCTCTTATAGTCTCCGAGATCTA----GGTGTTCATACGGACAGACGG--------ACATGGCTAGATCGACTCGGTT-GTTGATCCTGATCAAGAAT-----ATATATACTTGGTGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACAT-------TTTGGCGACTTTAATATACCAT-------------TTC-ACCC------TATGGGTGTATGGTATAAATATATCAAATATAT---------ACA--AT-A---------GTA--------------------TT------CCT---------------------------------------------------TTGGA----------------------------TTTGTTATTT--------------------G----------------------------------------------------------A-TACATATTAAATATCA--ATAATTTAAATAG-------TTTCA
droVir3 scaffold_12969:184921-185220 - CAATTTCTCTAGCTCTTATAAGTTCTGAGATCCTTGCCGACGGACAGACAGACAGACGG--------ACATGGCTAGATCGAGG-AGCT-ATTGGTGCTGATCAAGAAT-----ATATATACTTTATGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACATTGGGATCTTGCACAAATACAACATACCCT-------------TTTTACACATTTTTACTGGGTTCAGGGTATAAAATTTGTT-----T-CATGAACGTACAAAAA-AT------------------TTTTTTCTC------------------------------------------A-----------------------TTGAA----------------------------TTTA---TGT--------------------A-------------------------------------------AAAACAGTTAAAT--AAAGA---------------AAAATATA-ATAAGT--GAAGCAAA
droMoj3 scaffold_6482:165287-165566 + CAGCT-CTCTAGCTCTTATATCTTCTGAGATCCT----TTTGCTCATACGGACGGACGGACAGACGGACAGGGTTATATCGACTCAGCT-CGTCGTGCTGATCAAGAAT-----ATATATACTTTATGGGGTCTGCGATGATTTCTTCTGCCTGTTACATACAT-------TTC-ACAAAACCATTATACCCT-------------GATTTCCCATTTTCAATGGGTTCAGGGTATAAAAAATAA-------------AC---A---A----AA-----------------------------------------------------CAAAAATTTTTTTTC-----------------------C-------------------------AAATCAAAA-----ATT-----------------------------------------ATATTTCAAATAA---------------------------------------------AAAATCTGCAAAAAT-----TCAAA
droGri2 scaffold_1292:258-514 - GAAAC-CTTTAACTCTTGTAGTCTCTGAAATCCA----CATGTTCATACAGACTGACGG--------ACATGGCTAT-----------------ATCCTGATCAAGAAT-----ACGTATACCTCATGGGGTCCGAGATGCTTCCTTCTGCCTGTTACATACAT-------TTGCACAAAATCATTATGCCCT-------------TTTTACCCGTTTTCAATGGATTGAGGGTATAAAAAGGGT-----TAC-AATGTGC-------------------------------------------------------------------------------------TCAT---------------GTGGA----------------------------TTTATT-----------------------------------------------------GATCTGGATTCTTGTTATAAG------CT---------------TC-----------ACAACATTTA-CAAATAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAACC-TTCTAGCTTTTATTGTTCCTGAGATCTC----GAGGTTCATAGGGACAGACGG--------ACAT----------------------------GGTCAAGAAT-----ATATATATTTTATATAGTCGGAAACGCTTCCTTCTGCCTGTTACATACTT-------TTCAACGAATCTAGTATACCCT-------------TTT-ACAC------TACGCGTAATGGGCATAAAAACATCAAGGCTAA---------AAA--AA-AC------------------TTTTTTTTT------------------------------------------A-----------------------C-------------------------AGATCCATA-----TTT--------------------A----------------------------------------------------------A-ACCAATTTTAATGTCGAGATAATCTATACAAGT-----CCAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................TACGCGTAATGGGCATAAAAACATCAAGGC..........................................................................................................................................................................................................................................................................................3017.00700000050200000000
............................................................................................................................TATATAGTCGGAAACGCT......................................................................................................................................................................................................................................................................................................................................................................................................18204.1082000082000000000000
...........................................................................................................................TTATATAGTCGGAAACGC.......................................................................................................................................................................................................................................................................................................................................................................................................18203.9078000007800000000000
.........................TGAGATCTC----GAGGTTCATAGGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300001010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATTTTAATGTCGAGATAATCTA.................2512.00200000000200000000
.........................TGAGATCTC----GAGGTTCATAGGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000000200000000
..............................................TAGGGACAGACGG--------ACAT----------------------------GGTCAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000000200000000
.........................TGAGATCTC----GAGGTTCATAGGGACAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000020000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------A----------------------------------------------------------A-ACCAATTTTAATGTCGAGAT.......................2312.00200200000000000000
...........................................................................................................AT-----ATATATATTTTATATAGTCGGA............................................................................................................................................................................................................................................................................................................................................................................................................2451.80900000017000010000
....................................................................................................................................................TGCCTGTTACATACTT-------TTCAACGAA................................................................................................................................................................................................................................................................................................................................................................25201.5030000000300000000000
................................................................................................................................................................................................................T-ACAC------TACGCGTAATGGGCATAAAAAC..................................................................................................................................................................................................................................................................................................2711.00100000000100000000
........................................................CGG--------ACAT----------------------------GGTCAAGAAT-----ATATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTAATGTCGAGATAATCTATACA.............2711.00101000000000000000
.......................................AGGTTCATAGGGACAGACGG--------ACAT----------------------------GGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
........................................................CGG--------ACAT----------------------------GGTCAAGAAT-----ATATATATTT........................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
................................................................................................................................................................................................................T-ACAC------TACGCGTAATGGGCATAAAAACA.................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.....................................................................................................................................................................................................................................................................................................TTTTTT------------------------------------------A-----------------------C-------------------------AGATCCATA-----TTT--------------------A----------------------------------------------------------A-ACCAA......................................2711.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------A-ACCAATTTTAATGTCGAGATAATCTA.................2811.00100000000100000000
................................................GGGACAGACGG--------ACAT----------------------------GGTCAAGAAT-----..................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
......................................................................................................................................................................................................................................................................................................TTTTT------------------------------------------A-----------------------C-------------------------AGATCCATA-----TTT--------------------A----------------------------------------------------------A-ACCAA......................................2611.00100000000010000000
.....................................................................................................................................................................................................................................TGGGCATAAAAACATCAAGGCTAA---------AAA--AA-......................................................................................................................................................................................................................................................................2911.00100000000100000000
.....................................................................................................................................................................................................................................TGGGCATAAAAACATCAAGGC..........................................................................................................................................................................................................................................................................................2111.00100000010000000000
....................................................................CAT----------------------------GGTCAAGAAT-----ATATATATTTTA......................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
...........................................................................................................AT-----ATATATATTTTATATAGTCGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................2551.00500000002000030000
.......................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------A----------------------------------------------------------A-ACCAATTTTAATGTCGAGATAAT....................2611.00100010000000000000
.........................TGAGATCTC----GAGGTTCATAGGGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
...................................................................................................................................................................................................................................................TCAAGGCTAA---------AAA--AA-AC------------------TTTTTTTT..........................................................................................................................................................................................................................................2511.00100000000100000000
..........................................TTCATAGGGACAGACGG--------ACAT----------------------------GGTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
.....................................................................................................................................................................................................................................TGGGCATAAAAACATCAAGGCTAA---------AAA--.........................................................................................................................................................................................................................................................................2711.00100000010000000000
............................................................................................................T-----ATATATATTTTATATAGTCGGAAACGC.......................................................................................................................................................................................................................................................................................................................................................................................................2821.00200000000000002000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGATAATCTATACA.............1811.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATGTCGAGATAATCT..................1911.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TT--------------------A----------------------------------------------------------A-ACCAATTTTAATGTCGA..........................2111.00100010000000000000
...................................................................................................................................................................................................................................................TCAAGGCTAA---------AAA--AA-AC------------------..................................................................................................................................................................................................................................................1711.00100000000001000000
...............................................................................................................................................................................................................TT-ACAC------TACGCGTAATGGGCATAAAAAC..................................................................................................................................................................................................................................................................................................2811.00100000010000000000
..............................TCTC----GAGGTTCATAGGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------A-ACCAATTTTAATGTCGAG.........................2011.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTT--------------------A----------------------------------------------------------A-ACCAATTTTAATGTCGAGATA......................2611.00100000010000000000
...................................................................................................................................................................T-------TTCAACGAATCTAGTATACCCT-------------T.....................................................................................................................................................................................................................................................................................................................................24200.9018000600100000002000
.........................................................................................................GAAT-----ATATATATTTTATATAGTCGGA............................................................................................................................................................................................................................................................................................................................................................................................................2650.80400000001020010000
...........................................................................................................AT-----ATATATATTTTATATAGTCGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................2550.80400000000000040000
............................................................................................................................................................ACATACTT-------TTCAACGAATCTAGTA.........................................................................................................................................................................................................................................................................................................................................................24200.701400000086000000000
.....................................................................................................................TATATTTTATATAGTCGGAAACGCT......................................................................................................................................................................................................................................................................................................................................................................................................2530.67200000010000010000
...................................................................................................................TATATATTTTATATAGTCGGAAACGCT......................................................................................................................................................................................................................................................................................................................................................................................................2730.67200000000000020000
...........................................................................................................AT-----ATATATATTTTATATAGTCGGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................2650.60300000012000000000
...................................................................................................................................................CTGCCTGTTACATACTT-------TTCAACGA.................................................................................................................................................................................................................................................................................................................................................................25200.5511000000110000000000
......................................................................T----------------------------GGTCAAGAAT-----ATATATATTTTATA....................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100000000010000000
...................................................................................................................................................................T-------TTCAACGAATCTAGTATACCCT-------------TTT-..................................................................................................................................................................................................................................................................................................................................26200.45900000000900000000
............................................................................................................................TATATAGTCGGAAACGCTTCCTT.................................................................................................................................................................................................................................................................................................................................................................................................23200.40800000044000000000
...................................................................................................................................................................T-------TTCAACGAATCTAGTATACCCT-------------TTT-ACA...............................................................................................................................................................................................................................................................................................................................2930.33100010000000000000
.....................................................................................................................TATATTTTATATAGTCGGAAACG........................................................................................................................................................................................................................................................................................................................................................................................................2330.33100000000100000000
...................................................................................................................TATATATTTTATATAGTCGGAAACGC.......................................................................................................................................................................................................................................................................................................................................................................................................2630.33100000000000010000
...................................................................................................................................................CTGCCTGTTACATACTT-------TTCAACGAA................................................................................................................................................................................................................................................................................................................................................................26200.30600000000060000000
..............................................................................................................................................TCCTTCTGCCTGTTACATACTT-------TTCAAC...................................................................................................................................................................................................................................................................................................................................................................28200.25500000022000001000
.......................................................................................................................TATTTTATATAGTCGGAAACGCT......................................................................................................................................................................................................................................................................................................................................................................................................2340.25100000010000000000
........................................................................................................................................................TGTTACATACTT-------TTCAACGAATCTAGTA.........................................................................................................................................................................................................................................................................................................................................................28200.20400000000400000000
...........................................................................................................AT-----ATATATATTTTATATAGTCGGAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................2750.20100000000000001000
............................................................................................................................................................ACATACTT-------TTCAACGAATCTAGTAT........................................................................................................................................................................................................................................................................................................................................................25200.15300000000003000000
.......................................................................................................................................................CTGTTACATACTT-------TTCAACGAAT...............................................................................................................................................................................................................................................................................................................................................................23200.15300000000030000000
...........................................................................................................AT-----ATATATATTTTATATAGTCGGT............................................................................................................................................................................................................................................................................................................................................................................................................2470.14100000000000010000
...........................................................................................................AT-----ATATATATTTTATATAGTCGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................2580.13100000000000010000
..........................GAGATCTC----GAGGTTCATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.13100000000001000000
...........................................................................................................AT-----ATATATATTTTATATAGTCGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................2690.11100000000000010000
..........................................................................................................................TTTATATAGTCGGAAACGCTTCCT..................................................................................................................................................................................................................................................................................................................................................................................................24200.10200000000200000000
.............................................................................................................................................TTCCTTCTGCCTGTTACATACTT-------TTC......................................................................................................................................................................................................................................................................................................................................................................26200.10200000000000020000
...................................................................................................................................................CTGCCTGTTACATACTT-------TTCAACGAAT...............................................................................................................................................................................................................................................................................................................................................................27200.10200000001000010000
.........................................................................................................................TTTTATATAGTCGGA............................................................................................................................................................................................................................................................................................................................................................................................................15100.10100000000001000000
..............................................................................................................................TATAGTCGGAAACGCTTCCTTCT...............................................................................................................................................................................................................................................................................................................................................................................................23200.10200100000010000000
.........................TGAGATCTC----GAGGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15130.08100000000010000000
..............TTTATTGTTCCTGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16140.07100000000001000000
.....................................................................................................................TATATTTTATATAGT................................................................................................................................................................................................................................................................................................................................................................................................................15190.05100000000001000000
..............................................................................................................................TATAGTCGGAAACGCTTCCTT.................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000001000000000
.............................................................................................................................................TTCCTTCTGCCTGTTACATACTT-------TTCAA....................................................................................................................................................................................................................................................................................................................................................................28200.05100000000000010000
.................................................................................................................................................TTCTGCCTGTTACATACTT-------TTCAACGA.................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000000000
...........................................................................................................................TTATATAGTCGGAAACGCTTCCTTC................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000010000000000
............................................................................................................................................................ACATACTT-------TTCAACGAATCTAG...........................................................................................................................................................................................................................................................................................................................................................22200.05100000000001000000
..........................................................................................................................TTTATATAGTCGGAAACGCT......................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000001000000000
................................................................................................................................................CTTCTGCCTGTTACATACTT-------TTCAA....................................................................................................................................................................................................................................................................................................................................................................25200.05100000000010000000
..................................................................................................................................................TCTGCCTGTTACATACTT-------TTCAACGAAT...............................................................................................................................................................................................................................................................................................................................................................28200.05100000000010000000
....................................................................................................................................CGGAAACGCTTCCTTCTGCCTGTTACATACT.................................................................................................................................................................................................................................................................................................................................................................................31200.05100000010000000000
............................................................................................................................TATATAGTCGGAAACGCTTCCTTCT...............................................................................................................................................................................................................................................................................................................................................................................................25200.05100000010000000000
..............................................................................................................................TATAGTCGGAAACGCTTCCTTCTGC.............................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000001000000
..................................................................................................................................................................TT-------TTCAACGAATCTAGTATACCCT-------------T.....................................................................................................................................................................................................................................................................................................................................25200.05100000000000010000
................................................................................................................................................CTTCTGCCTGTTACATACT.................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000010000000
...................................................................................................................................................CTGCCTGTTACATACTT-------TTCAA....................................................................................................................................................................................................................................................................................................................................................................22200.05100000010000000000
.......................................................................................................................................................CTGTTACATACTT-------TTCAACGAATCT.............................................................................................................................................................................................................................................................................................................................................................25200.05100000000100000000
...........................................................................................................................TTATATAGTCGGAAACGCTTCCTT.................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000001000000000
..........................................................................................................................TTTATATAGTCGGAAACGCTTCCTTC................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000000010000000
droSec2
CAACC-TTCTAGCTTTTATTGTTTCTGAGATCTC----GAGGTTCATACGGACAGACGG--------ACAT----------------------------AGTCAAGAAT-----ATATATAATTTATATAGTCGGAAACGCTTCATTCTGCCTGTTACATACTT-------TTCAGCGAATCTAGTATACCCT-------------TTT-ACAC------TACGCGTAATGGGCATAAAAACATTAAGGCTAA---------AAA--AA-A--------------------------------------------------------------CTTTTTTTA-----------------------C-------------------------ATATCCATA-----TTT--------------------A----------------------------------------------------------A-AC--------------------------CAAGT-----CCAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................TTCTGAGATCTC----GAGGTTCATACGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000
..................................................................................................................................................................................................................................TAATGGGCATAAAAACATTAAGGC..........................................................................................................................................................................................................................................................................................2411.0010010
.........................TGAGATCTC----GAGGTTCATACGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.3310010
...................................................................................................................................................................T-------TTCAGCGAATCTAGTATACCCT-------------T.....................................................................................................................................................................................................................................................................................................................................2450.2011000
...................................................................................................................................................................T-------TTCAGCGAATCTAGTATACCCT-------------TT....................................................................................................................................................................................................................................................................................................................................2550.2011000
dm3
CAACC-TTCTAGCTTTTATAGTTCCTGAGATCTC----GACGTTTATACGGACGG------------ACATGACCAGTTCGGCTCGGCT-ATCGATCCTGATCAAGGTT-----ATATATACCTTATGTGGTCGGAAACGCTTTCTTCTACCTGCTACATACTT-------TTCAACGAATCTACTATACCCT-------------TTT-AGTC------TACGAGTAACGGGCAAATAGATC-------------------------------GCTCTATGT--------------------TA------TCAGTTTC-------------------------------TTTTGCTAGGGA-------------------------------ACGCAAA-----TTT--------------------C----------------------------------------------------------A-ACCACAATAAATGG----AAAATCTATTAAAAT-----C----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............TTTTATAGTTCCTGAGATCTC----GACGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620113.70227400000000000000000000011500000000000000001001103910000009011000000000000000000000000000000000000000000000000000002000000000000000000010050500000000017939900001770420500000000000000000000000020003000000047000011800000101002660040002100181553000055300000000000000000000060000000000000000000000000000000000000089000000000002000000000000000000000113077000000
.............TTTTATAGTTCCTGAGATCTC----GACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................252040.95819000000000000000000000000000000000000003000000000000000000000000000000000000000000030001000000000400000000000000000000000000000000000600100090900000124600000430000000000000000000000000000000001800000030000000400000000007200000012003723000000004000000000000000000000000000000000000001000000000000000000017000000095270000000000000000900000000
.............TTTTATAGTTCCTGAGATCTC----GACGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................272031.4062800000000000000000000000000000000000010300300005000000400000000000000000000000000001000000000000000000000000000000000000000000000000020000000220000600501100000000000000000000000000000000000000920212100020000000710003000004000000384000000000000208000000000000000000000000000000000000000000000000000000014211000009211190000000000000090420000000
..........................................TTTATACGGACGG------------ACATGACCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................24125.002500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130001000030000000000000000000000000000000000000101000000000100000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................ATAGTTCCTGAGATCTC----GACGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................232018.40368000000000000000000000300000000000000000000000000000000000003000000000000000000000000001000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000000001000001470000500000050000000000000136000363500000000000100000000000000000000000000000000000000000000000001800000050000000014000000000000000005400000000
....................................................................................................................................................................................................................TC------TACGAGTAACGGGCAAATAGATC-------------------------------GC................................................................................................................................................................................................................................................................27111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103000000000000000000000000020002210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AGTTCCTGAGATCTC----GACGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21208.101620000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000707000000000000000000000040000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000020000000000010010000007403000014000000100001000000060
.................ATAGTTCCTGAGATCTC----GACGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22207.601520000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010001200000000000000000000000001160100000000000000000000000000000000000000000000000000000000000000000000010000000020000000000000001000050100000
.............TTTTATAGTTCCTGAGATCTC----GAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24207.30146000000000000000000000000000000000000000000002000008000000000000000000000000000000000000000000000000000000000000000000000000000000000500000020000220000100001300000000000000000000000000000000000501200000100001000000000000000028300000000000000000000000000000000000000000000000000000000000000000000000400200003500000000000000000200000000
..............................................................................................................................TGTGGTCGGAAACGCTTTCTTCTACC............................................................................................................................................................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGAGATCTC----GACGTTTATACGGACGG------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2726.50130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020142100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000020000000
............................................TATACGGACGG------------ACATGACCAGTTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001001000200000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TT-AGTC------TACGAGTAACGGGCAAATA.....................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................TACGAGTAACGGGCAAATAGATC-------------------------------GC................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000
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....C-TTCTAGCTTTTATAGTTCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
droEre2
CAACA-TTCTAGCTTTTGTAGTTCCTGAG--CGA----GGCGTTCATACGGACAGACAG--------AC-----------------------------TGACAGACGGA-----ATATATACTTTATATGGTCGGAAACGTTTCCTTCTCTTTGTTACATACTT-------TTCAACGAATCTAGTATACCCT-------------TTT-ACTC------CACGAGTAACGGGTATATAT--TAT-----TA-CATCACATCGCAGA-------------CAA--------------------TT------TAT---------------------------------------------------------------------------------------------------------------------------------------------CTGATATGGAT-CTCGCTATAATTTTCGATT-----------------TGATAAAA------CCTGA-----CCAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAT-CTCGCTATAATTTTCGATT-----------------.............................2611.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTTCGATT-----------------TGATAAAA------CCTG...........2511.0011000000
............................................................................................................................................................................TCAACGAATCTAGTATACCC....................................................................................................................................................................................................................................................................................................................................................20200.0511000000
droYak3
CAACT-TTCTAGCTTTTGTAGTTCCTGAGATCTC----GACGTTCATACGGACAGACGG--------ACATGGCCAAATCGACTCGGCT-ATTGATCCTGATCAAGAAT-----ATATATACTTTATATGGTCGGAAACGCTTCCTTTTGCCTGTTACATACTT-------TTCAACGAATCTAGTATACCCT-------------TTT-ACTT------TACGAGTAACGGGTATAATTAA-----GTTTAA---------AG-------------------------------------------------------------T-T-------------GCAGCTCAT---------------GAGCACTGCTATTTTTATGAACACAGCTGTACATA-----TTT-------AAACATATATTTTT-AA-----------------------CTACTAA---------------------------------------------AAACTATTTAAATGT-----TAAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATGAACACAGCTGTAC.......................................................................................................................................2211.00100100000000
.......................................................................................................................................................................................................................................................................G-------------------------------------------------------------T-T-------------GCAGCTCAT---------------GAGCACTGCT.............................................................................................................................................................2230.33100000010000
.......................................................................................................................................................................................................................................................................G-------------------------------------------------------------T-T-------------GCAGCTCAT---------------GAGCACTG...............................................................................................................................................................2030.33100000010000
.......................................................................................................................................................................................................................................................GTTTAA---------AG-------------------------------------------------------------T-T-------------GCAGCTCAT---------------GA.....................................................................................................................................................................2140.25100000010000
.......................................................................................................................................................................................................................................................GTTTAA---------AG-------------------------------------------------------------T-T-------------GCAGCTCAT---------------.......................................................................................................................................................................1940.25100000010000
........................................................................GCCAAATCGACTCGGCT-ATTGATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.20400400000000
.............................................................................................................................ATATGGTCGGAAACGCTTCCTTTTGCC............................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
...................................................................................................................................TCGGAAACGCTTCCTTTTGCCTGTTAC......................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
...........................................................................AAATCGACTCGGCT-ATTGATCCTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
......................................................................................................................ATACTTTATATGGTCGGAAACGCT......................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
.............................................................................................................................................TTCCTTTTGCCTGTTACATACTT-------TT.......................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
droEug1
CAACT-TTGTATCTGCTATAGTTCCTGAGATCTC----AGCGTTCATACAGACGGACGG----ACGGACATGGCTCCTTCGTCTTCGCT-ATTCACCCTGATCAAGAAT-----ATATGTACTTTATAGGATCGGAAACGCTTCCTTCTGCCTGTTGCATACTT-------TTCAACGAATCTAGTATACCCT-------------TTT-ACTC------TACGAGTAACGGGTATAATTAA-----GAGTAA---------TAA--TT-A---CGTTTATCA--------------------TT------ACGATGCC-------------------------------ATCTGCAAGATAAGG---------------------------------TA-----TTT--------------------A----------------------------------------------------------A-AGCAGAGTTAAT---------------TC-AAA-----GCAGTSizeHit CountTotal NormTotal
No Reads
droBia1
------TTCTCGCTCTTTTAGTATCCGAGATCTC----AGCGTTCATACGGACAGACAG--------AC----------CGACTCGGCT-AGTGATCCTGATCAAGAATATAC-ATATATACTTTATGGGATCGGAAACGCTTCCTTCTACCTGTCACATACTT-------TCCGACTATTCCATTATACCCT-------------TTT-ACTC------TACGAGTAACGGGTATAATTGTTTC---------ATTATCTCTCTGA-------------CCA--------------------TT------TCTTTGGC--------------------------------------------------------------------------ATCTATA-----TGT--------------------T----------------------------------------------------------A-ACTAAATTTAATTC----GAAGTTTTTAAAAAT-----ATAAASizeHit CountTotal NormTotal
No Reads
droTak1
CAACC-TTCTAGCTTTTGTAGTTTCTGAGATCTG----ACCGTTCATACAGACGGACAG--------AC-----------------------------GGATCAAGAAT-----ATATATACTTTATGGGGTCGGAAACGCTTCCTTCTAGCTGTTACATACTT-------TTTCACGAATCTAGTATACCCT-------------TTT-ACTC------TACGAGTAACGGGTATAAAAAGAAA-----TAA---------AAA--AC-A--------------------------------------------------------------GGATT-------------------------------------------------------------------TTT----------------------------------------------------------------------------------------------------------ACATCAAT-----TTTAASizeHit CountTotal NormTotal
No Reads
droEle1
GAAC--TACTAGAA-TTTTAGTTTCCGAGCTCTC----GACTTTCATAG--------------------ATGGCTAGATCGAGTCGGCTGATTAATCCTGATCAAAAAC-----ATATATACTTTTTATGGTCGTAAACGCTTCCTTCTACCTGTTACCTTCCT-------TTCAACGAATACAATTTA----------------------CTC------TTCGAGTAAAGGGTATAACAACCAAA------------CC------------------------------TCGGATAAAACTTAACCAACTTCTTTAGTATAATATC-----------------------ATATCCATAATACTA---------------------------------AA-----TTC--------------------A----------------------------------------------------------C-AACAT---------AAATACATCCCATAC-AAT-----ACAAASizeHit CountTotal NormTotal
No Reads
droRho1
CAATC-TTCTAGCTTTTATAGTTTCCGAGATCTC----AGCGTTCATACGGACAGAC----------------------------------------------AAGAAT-----ATATATAATTTATAGGGTCGGAAACGCTTCCTTCTAGCTGTTACATACTT-------TTGCACGAATACAATATACCCT-------------TTT-ACTC------TACGAGTAACGGGTATAAAAATAATAA---TA----A-AC--------------------------------------------------------------------------------------ACAA---------------GTA-----------------------------------------------AAACACAAAATTTCTAAAAAAAAATCCAAAAAGTTGGATTTAAAT-------------------------------------------AGAAAAAGTGCCTACAAAT--G--CTAAASizeHit CountTotal NormTotal
No Reads
droFic1
-----------GCTTCTAAAGTTTCCGAGATCTT----GAAGCTCAAAGGGACGAAAAA--------AAATACAATTTTT-------------------TACTAGGAAAATGCAAAAAATCCATTATTGGGTCGGAAATGCTTGCTTCTATCTGTAAAATATTT-------TTTAACAAAAACAAAATATTCTGGTTGACAGTTCTTAT-ACTC------AACAATAAAAT-----------AATAAGAT--------------------A---CT------------------------------------------------------------------------------------------------ACTATTATCTTGACC----ACAGCTGTA-----TTTAAAAGTGTAATATA------------------------------------------------------------------------------------TATATTCTACACAAAA-----ATAAASizeHit CountTotal NormTotal
No Reads
droKik1
CAG--------------------------------------------ACGGACAGACGG--------ACATGGCTAGAT---------------------------CAT-----GTATATACTTTATAGGGTCGGAAACGTCTGCTTCACTGCGTTGCAAACTT-------CTGACTGAAATTATAATACCCT-------------GC--------------------AAGGGTATAAAAAGCCCGA-----A----------A---------T-----------------------------------------------------CGAAATTTTTTTTTG-----------------------A-------------------------ATGGCTGCC-----ATT-----------------------------------------TTG--------------------------------TTCA-ACTAAATTT----------------AAAAAAAA-----TCTGTSizeHit CountTotal NormTotal
No Reads
droAna3
CAACT-CGATAGCTTTAAAA----CTGAGAGACT----AGTTTGCGTAGAAACAGACAG--------ACAGGA-----------------GGTGATCCTGATCAAGAAT-----ATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTT-------TTGACCAAAATTATAATACCCT-------------CTG-------------C-----AAGGGTATAATAATAATTC-------TTGATAAAAA---AAAAC---ATTG-GATTTCCCTTCTCTTTCTC------------------------------------------A-----------------------C-------------------------A----AATA-----TCT--------------------G-----------------------------------------AAAAAATTATGAAAT-----------------------------AAAATA-------ATTTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................ATATACTTTATAGGGTCGGAGATGTC......................................................................................................................................................................................................................................................................................................................................................................................................26200.306600000
..........................................................................................................AAT-----ATATATACTTTATAGGGTCGGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................27200.102020000
........................................TTTGCGTAGAAACAGACAG--------ACAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000
.....................................................................................................................................................CTGCGTTGCACACTT-------TTGACCAAAATTA............................................................................................................................................................................................................................................................................................................................................................28200.051100000
droBip1
AAATC-CTATAGCTCTAT--CTCTCTGAGCTACA----TGCGTTCATACGGATAGACGG--------ACATGGCTATATCGACTAGGCT-TTTAATCCTGATCAAGAAT-----ATAGATACTTTAAGGGGTCGGATA--ATTCCTTCTCTACGTTACATACAT-------TCACACTACTATAATATACCCT-------------TGT-ACAC------TACGAGTACCGGGTACAAAATTATAA------------------------AA------------------TTCTATTAT------------------------------------------A-----------------------C-------------------------GTAGACAAC-----CTC----------------------------------------------------------------------------------------------------------ATAACAAT-----GTTAASizeHit CountTotal NormTotal
No Reads
dp5
CGTTG-CTCTAGCTCTTATAGTCTTTGAGCTCT--------------------------------------------ATCGACTCGGCT-ATTGACGCTGATCAAGAAT-----ATATATACTTTATGCGGTCGGAAACGTTACCTTCTGGACGTTACACACATCCACTTTTACCGCAAATCTAATATACCTC-------------TAT-ACTCAT----TTTGAGTATCGCGTATAAATAGAGTAATATTAG-TAA-AA---A---A----AA-----------------------------------------------------AAAAAACAATTT--------------------------------------------------------------------T--------------------------------------------------------------AGAAAATTTTTAAATT-----------------TAACTTAACCTAGAAAA-A-----TAAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............TTATAGTCTTTGAGCTCT--------------------------------------------ATCGACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
....................................................................................................................................CGGAAACGTTACCTTCTGGACGT.........................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...............................................................................................CGCTGATCAAGAAT-----ATATATACTT........................................................................................................................................................................................................................................................................................................................................................................................................................2440.5020100100000
......................................................................................................................................................................................TAATATACCTC-------------TAT-ACTCAT----T.......................................................................................................................................................................................................................................................................................................................2140.2510100000000
..............CTTATAGTCTTTGAGCTCT--------------------------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510100000000
...................................................................................................................TATATACTTTATGCGGTCGGA............................................................................................................................................................................................................................................................................................................................................................................................................21100.2020200000000
...............................................................................................CGCTGATCAAGAAT-----ATATATACT.........................................................................................................................................................................................................................................................................................................................................................................................................................2350.2010000000010
.......................................................................................................................TACTTTATGCGGTCGGAAACG........................................................................................................................................................................................................................................................................................................................................................................................................21110.1820100001000
.......................................................................................................................TACTTTATGCGGTCGGAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................20110.1820100001000
..................................................................................................................ATATATACTTTATGCGGTCGG.............................................................................................................................................................................................................................................................................................................................................................................................................2190.1110100000000
..........................................................................................................AAT-----ATATATACTTTATGCGGT................................................................................................................................................................................................................................................................................................................................................................................................................2190.1110100000000
...............................................................................CGACTCGGCT-ATTGACGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.1111000000000
...............................................................................................................................................CCTTCTGGACGTTACACACA.................................................................................................................................................................................................................................................................................................................................................................................20200.1020000002000
...................................................................................................................TATATACTTTATGCGGTCGGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................23100.1010100000000
...................................................................................................................TATATACTTTATGCGGTCGGAAACG........................................................................................................................................................................................................................................................................................................................................................................................................25100.1010100000000
.....................................................................................................................TATACTTTATGCGGTCGGA............................................................................................................................................................................................................................................................................................................................................................................................................19100.1010100000000
......................................................................................................................ATACTTTATGCGGTCGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................19110.0910100000000
.......................................................................................................................TACTTTATGCGGTCGGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................19110.0910100000000
...........................................................................................................AT-----ATATATACTTTATGCGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................21110.0910000001000
.............................................................................................................................................TACCTTCTGGACGTTACACA...................................................................................................................................................................................................................................................................................................................................................................................20140.0710100000000
..........................................................................................ATTGACGCTGATCAAGAAT-----..................................................................................................................................................................................................................................................................................................................................................................................................................................19150.0710000100000
....................................................................................................................................................TGGACGTTACACACATCCACTTTTACC.....................................................................................................................................................................................................................................................................................................................................................................27200.0510010000000
...................................................................................................GATCAAGAAT-----ATATATACTTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000010
droPer2
CGTTG-CTCTAGCTCTTATAGTCTTTGAGCTCT--------------------------------------------ATCGACTCGGCT-ATTGACGCTGATCAAGAAT-----ATATACACTTTATGCGGTCGGAAACGTTACCTTCTGGACGTTACACATATCCACTTTTACCGCAAATCTAATATACCTC-------------TAT-ACTCAT----TTTGAGTATCGCGTATAAATAGAGTAAAATTAG-TAA-AA---A---A------------------------------------------------------------AAAAACGATTT--------------------------------------------------------------------T--------------------------------------------------------------AAAAAATTGTTAAATT-----------------TAACTTAACCTAGAAAA-------ATAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............TCTTATAGTCTTTGAGCTCT--------------------------------------------ATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
......................CTTTGAGCTCT--------------------------------------------ATCGACTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
.....................................................................................................................................................................................................................CAT----TTTGAGTATCGCGTATAAATAGA.................................................................................................................................................................................................................................................................................................2612.002200000
....................GTCTTTGAGCTCT--------------------------------------------ATCGACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
................................................................................................GCTGATCAAGAAT-----ATATACACTTTA......................................................................................................................................................................................................................................................................................................................................................................................................................25200.357070000
................................................................................................GCTGATCAAGAAT-----ATATACACTT........................................................................................................................................................................................................................................................................................................................................................................................................................23200.255050000
.................................................................................................CTGATCAAGAAT-----ATATACACTTTA......................................................................................................................................................................................................................................................................................................................................................................................................................24200.204040000
.....................................................................................GGCT-ATTGACGCTGATCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.153300000
.................................................................................................CTGATCAAGAAT-----ATATACACTTTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................25200.102020000
.................................................................................................CTGATCAAGAAT-----ATATACACTT........................................................................................................................................................................................................................................................................................................................................................................................................................22200.102020000
..................................................................................................................................................TCTGGACGTTACACATATCCACTTTTACC.....................................................................................................................................................................................................................................................................................................................................................................29170.061010000
.........................................................................................................................................................GTTACACATATCCACTTTTACC.....................................................................................................................................................................................................................................................................................................................................................................22200.051010000
................................................................................................GCTGATCAAGAAT-----ATATACACTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
.................................................................................................CTGATCAAGAAT-----ATATACACT.........................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
.............................................................................ATCGACTCGGCT-ATTGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
..................................................................................................................................................TCTGGACGTTACACATATCCA.............................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.................................................................................................CTGATCAAGAAT-----ATATACACTTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
..................................................................................................................................................TCTGGACGTTACACATATCCACT...........................................................................................................................................................................................................................................................................................................................................................................23200.051010000
..................................................................................................TGATCAAGAAT-----ATATACACTTTA......................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
droWil2
-------TCTAGCTCTTATAGTCTCCGAGATCTA----GGTGTTCATACGGACAGACGG--------ACATGGCTAGATCGACTCGGTT-GTTGATCCTGATCAAGAAT-----ATATATACTTGGTGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACAT-------TTTGGCGACTTTAATATACCAT-------------TTC-ACCC------TATGGGTGTATGGTATAAATATATCAAATATAT---------ACA--AT-A---------GTA--------------------TT------CCT---------------------------------------------------TTGGA----------------------------TTTGTTATTT--------------------G----------------------------------------------------------A-TACATATTAAATATCA--ATAATTTAAATAG-------TTTCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................TACGGACAGACGG--------ACATGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.20400301
....................................................................................................................................................................................TTTAATATACCAT-------------TTC-ACCC------T.......................................................................................................................................................................................................................................................................................................................21200.15303000
.....................TCTCCGAGATCTA----GGTGTTCATACGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.10202000
........................................................................................................................................................TGTTACATACAT-------TTTGGCGACTTTAATA.........................................................................................................................................................................................................................................................................................................................................................28200.10202000
.........................CGAGATCTA----GGTGTTCATACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
..............................................TACGGACAGACGG--------ACATGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
................................................CGGACAGACGG--------ACATGGCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
droVir3
CAATTTCTCTAGCTCTTATAAGTTCTGAGATCCTTGCCGACGGACAGACAGACAGACGG--------ACATGGCTAGATCGAGG-AGCT-ATTGGTGCTGATCAAGAAT-----ATATATACTTTATGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACATTGGGATCTTGCACAAATACAACATACCCT-------------TTTTACACATTTTTACTGGGTTCAGGGTATAAAATTTGTT-----T-CATGAACGTACAAAAA-AT------------------TTTTTTCTC------------------------------------------A-----------------------TTGAA----------------------------TTTA---TGT--------------------A-------------------------------------------AAAACAGTTAAAT--AAAGA---------------AAAATATA-ATAAGT--GAAGCAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................TTGGTGCTGATCAAGAAT-----ATATATACT.........................................................................................................................................................................................................................................................................................................................................................................................................................27200.102200000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TACTTTATGGGGTCGGAGATGC.......................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000000000000000000020000000000000000000000000000000000
........................................................................................................AGAAT-----ATATATACTTTATGGGGTCGG.............................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................TGGGGTCGGAGATGCTTC....................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000100000000000000000000000000000000
...................................................................................................GATCAAGAAT-----ATATATACTTTATGGGG.................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................TCGGAGATGCTTCCTTCTGCC............................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000100000000000000000000000
droMoj3
CAGCT-CTCTAGCTCTTATATCTTCTGAGATCCT----TTTGCTCATACGGACGGACGGACAGACGGACAGGGTTATATCGACTCAGCT-CGTCGTGCTGATCAAGAAT-----ATATATACTTTATGGGGTCTGCGATGATTTCTTCTGCCTGTTACATACAT-------TTC-ACAAAACCATTATACCCT-------------GATTTCCCATTTTCAATGGGTTCAGGGTATAAAAAATAA-------------AC---A---A----AA-----------------------------------------------------CAAAAATTTTTTTTC-----------------------C-------------------------AAATCAAAA-----ATT-----------------------------------------ATATTTCAAATAA---------------------------------------------AAAATCTGCAAAAAT-----TCAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................TTTATGGGGTCTGCGATGATTTCTTC................................................................................................................................................................................................................................................................................................................................................................................................2651.809610011
..............CTTATATCTTCTGAGATCCT----TTTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.255500000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATAA---------------------------------------------AAAATCTGCAAAAAT-----TC...2540.251100000
................TATATCTTCTGAGATCCT----TTTGCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.255500000
.......................................................................................................................TACTTTATGGGGTCTGCGATGATTT....................................................................................................................................................................................................................................................................................................................................................................................................2560.171100000
...............................................................................................TGCTGATCAAGAAT-----ATATATACTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................25200.153030000
................TATATCTTCTGAGATCCT----TTTGCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.153000030
...........................................................................................................................TTATGGGGTCTGCGATGATTTCTT.................................................................................................................................................................................................................................................................................................................................................................................................2470.141010000
.....................................................................................................................................TGCGATGATTTCTTCTGCCTG..........................................................................................................................................................................................................................................................................................................................................................................................2180.131100000
......................................................GACGGACAGACGGACAGGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.081000001
........................................................................................................................................................TGTTACATACAT-------TTC-ACAAAACCATT..........................................................................................................................................................................................................................................................................................................................................................26120.081100000
................................................................CGGACAGGGTTATATCGACTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.081100000
....................................................CGGACGGACAGACGGACAGGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.081000001
.........................................................................................................................................................GTTACATACAT-------TTC-ACAAAACCAT...........................................................................................................................................................................................................................................................................................................................................................24120.081100000
...........................................................................................................................TTATGGGGTCTGCGATGATTTCTTCCC..............................................................................................................................................................................................................................................................................................................................................................................................27130.081100000
.............................................................................................................................................................CATACAT-------TTC-ACAAAACCATTATACCC....................................................................................................................................................................................................................................................................................................................................................27130.081000010
............................................................................................................................................................ACATACAT-------TTC-ACAAAACCATTATACCC....................................................................................................................................................................................................................................................................................................................................................28130.081000010
..............................................................................................................................................................ATACAT-------TTC-ACAAAACCATTATACCC....................................................................................................................................................................................................................................................................................................................................................26140.071000010
..................................................................................................................................................................AT-------TTC-ACAAAACCATTATACCCT-------------GA....................................................................................................................................................................................................................................................................................................................................25150.071000010
.....................................................................................................................................................GCCTGTTACATACAT-------TTC-AC...................................................................................................................................................................................................................................................................................................................................................................20170.061100000
.......................................TTGCTCATACGGACGGACGGACAGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
.......................................................................................................AAGAAT-----ATATATACTTTATGGGGTCT..............................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.........................................................................................................................................................GTTACATACAT-------TTC-ACAAAACCATA..........................................................................................................................................................................................................................................................................................................................................................25200.051000010
..........................................................................................................................TTTATGGGGTCTGCGATGA.......................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
.................ATATCTTCTGAGATCCT----TTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
..............................................................................................................................................TTCTTCTGCCTGTTACATACA.................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
droGri2
GAAAC-CTTTAACTCTTGTAGTCTCTGAAATCCA----CATGTTCATACAGACTGACGG--------ACATGGCTAT-----------------ATCCTGATCAAGAAT-----ACGTATACCTCATGGGGTCCGAGATGCTTCCTTCTGCCTGTTACATACAT-------TTGCACAAAATCATTATGCCCT-------------TTTTACCCGTTTTCAATGGATTGAGGGTATAAAAAGGGT-----TAC-AATGTGC-------------------------------------------------------------------------------------TCAT---------------GTGGA----------------------------TTTATT-----------------------------------------------------GATCTGGATTCTTGTTATAAG------CT---------------TC-----------ACAACATTTA-CAAATAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:44 AM