ID:

dsi_18677

 Coordinate:

3r:10174410-10174526 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-18.3 -18.2 -18.2

Flybase annnotation

exon [3r_10174210_10175768_+]; CDS [3r_10174210_10175738_+]

No Repeatable elements found

Sense Strand Reads

#########################################################################################################################################################################################################################
CATCTACAAGCATCTCGGTGGCCATTGACCATCTGGACGCCCGGCATAAAGTGAATCTGTCGGAGCTTCGGCGTAAATTCCAAATGGACCAGTATTCCTTTATCAAACTGATAAACTACATAAGAGCAAACAAGATCAGTGCAGAGCAGTTATTGTCTGCGGAACAGCCGTTTTGGCAGGATGAGAAGTACCTCCAGCCCGGGGAGTATGAGCCCTG
**************************************************.(((.(((......((((.((.(((...(((....)))....))).))(((((((...)))))))........)))).....)))))).((((((.((.....))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR902009
testis
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 M023
head
 SRR1275487
Male larvae		 O002
Head
....................................................GAATAAGTGGGAGCTTCGGC................................................................................................................................................. 20 3 6 1.50 9 4 1 0 0 0 0 0 0 0 1 2 0 0 1
....................................................................................................................................................................CAGCCGTTTTGGCAGGATGAGAAG............................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TAAAGTTAATCTGTCGCAGCTTCGGC................................................................................................................................................. 26 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....TACAAGCATCTCGGTGGCCATTGACCATC........................................................................................................................................................................................ 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AAAGTGAATCTGTCGGAGC....................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................CATTGACCATCTGGACGCCCG.............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................GTCGGAGCTTCGGCGC............................................................................................................................................... 16 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......AAGCATATCGGTGGCCATTGA............................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................TAAAGTGAATCTGTCGGAG........................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGATAAACTACATAAGAGCAAACAAGA.................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ATTGTCTGCGGAACAGCCGT.............................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TAAAGTGAATCTGTCGGAGCTTCGGCG................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCAAACAAGATCAGTTCAGAGC...................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................GAATAAGTGGGAGCTTCGGCG................................................................................................................................................ 21 3 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................TGGACACCCGGCATAAAGTGAATCTGT............................................................................................................................................................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................GCTTCGGCGTAAATTCCAAATGGACCAGC............................................................................................................................ 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................ATAAGTGGGAGCTTCGGCG................................................................................................................................................ 19 3 19 0.53 10 4 0 0 0 0 4 0 0 1 0 0 0 1 0
..........................................................GTGGGAGCTTCGGCG................................................................................................................................................ 15 1 10 0.50 5 0 0 3 0 0 0 0 0 2 0 0 0 0 0
.....................................................AATAAGTGGGAGCTTCGGCG................................................................................................................................................ 20 3 7 0.43 3 1 0 0 0 0 1 0 0 0 0 0 0 1 0
......................................................................GCGTAGATTGCAAATGGGC................................................................................................................................ 19 3 20 0.20 4 0 0 0 0 0 0 0 0 0 0 0 4 0 0
.......................................................TCTGTCGGAGCTGCAGCGTAT............................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................AATAGGTGGGAGCTTCGGCG................................................................................................................................................ 20 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................GTGGGAGCTTCGGCGTCA............................................................................................................................................. 18 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................GTGGGAGCTTCGGCGCAA............................................................................................................................................. 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................GTGGGAGCTTCGGCGCA.............................................................................................................................................. 17 2 14 0.14 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................TGACCATCTGGTCACCCGGG............................................................................................................................................................................ 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGTCTGCGGAACAGA................................................. 15 1 16 0.13 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.........................TGACCATCTTGAATCCCGGC............................................................................................................................................................................ 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................ACAGCCGTTTTGTCAGAATT.................................. 20 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................TCCCGCCTGGGGAGTATGG...... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................AATAGGTGGGAGCTTCGGC................................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................TGGGCAGGATGAGAATT............................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................CCCGGGGCGTATTAGGC... 17 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................GCTCAGTGCAGAGCACT................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................TAGCTCAGTGCAGAGCA..................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................GCTCAGTGCAGAGCA..................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GTAGATGTTCGTAGAGCCACCGGTAACTGGTAGACCTGCGGGCCGTATTTCACTTAGACAGCCTCGAAGCCGCATTTAAGGTTTACCTGGTCATAAGGAAATAGTTTGACTATTTGATGTATTCTCGTTTGTTCTAGTCACGTCTCGTCAATAACAGACGCCTTGTCGGCAAAACCGTCCTACTCTTCATGGAGGTCGGGCCCCTCATACTCGGGAC
**************************************************.(((.(((......((((.((.(((...(((....)))....))).))(((((((...)))))))........)))).....)))))).((((((.((.....))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR902009
testis
 SRR618934
dsim w501 ovaries
......................................CGGGCCGTATTTCACTTAGAC.............................................................................................................................................................. 21 0 1 1.00 1 1 0 0
..................................TTTGCGGGCCGTATTTCAATTAGA............................................................................................................................................................... 24 3 1 1.00 1 0 1 0
.......................................................................................................................TATTCTCGTTTGTTCTAGTCA............................................................................. 21 0 1 1.00 1 1 0 0
....................................TGCGGGCCGTATTTCAATT.................................................................................................................................................................. 19 1 1 1.00 1 0 1 0
............................................................................................................................TCGTTTGTTTTAGTCA............................................................................. 16 1 18 0.06 1 0 0 1
............................................................................................ATAACGAGATAGGTTGACT.......................................................................................................... 19 3 20 0.05 1 0 0 1

Generated: 04/24/2015 at 10:36 AM