ID:

dsi_18676

 Coordinate:

2r:12900195-12900373 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.6 -33.5 -33.2

Flybase annnotation

five_prime_UTR [2r_12900086_12900457_-]; exon [2r_12899994_12900457_-]

No Repeatable elements found

Sense Strand Reads

#######################################################################################################################################################################################################################################################################################
TCAGAATCAGAAGCCACTATTCTCGGTCTCTCCTCGATTTTCGCTGTTTGCTCCCTGTGATCGCTGTGAACTTGGCGTGATAAGGGGCTCCGGCTCCTCCTGCAATCGAGAAAGCCCGCTGTTTGCGCCACCCGGCGAACACCAATCAGTCGATGGGAGTGCTCCGCTGCAATAGCAATTAGCCACTAACCTTCTGCCAGCTCTTCAGGTGCCATTCCCCTTCCTCCAGCTCCTCAGGTGCCCCGCGCAAACAGAGTTATCTGGAGTGCCGCCCGCTGG
***********************************************************.((((((......((((((((..(((((((....(((...........)))..))))).))..))))))))..))))))........((.((.....)).))...******************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body		 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
...............................................................................................................................................AATCAGTCGATGGGAGTGCTC................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
................................................TGCTCCCTGTGATCGCTGTGAACTTG............................................................................................................................................................................................................. 26 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
................................................TGCTCCCTGTGATCGCTGTGAACTTGG............................................................................................................................................................................................................ 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................AACAGACTTATCTGGAGTGCCGC....... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................TGGGAGTGCTCCGCTGCAATAGCAA..................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................ATCGCTGTGAACTTGGCG.......................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................CGCAAACAGAGTTATCTG................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGCGCCACCCGGCGAACACCAATCAGT................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................GCTGTTTGCGCCACCC.................................................................................................................................................. 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CAGGTGCCATTCCCCTTCCT...................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................GCAATTAGCCACTAACCTTCT.................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................CCGGCGAACACCAATCAGTCGATGGGA......................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................TGCCCCGCGCAAACAGAGT...................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................ATCGAGAAGGCGCGCTGTTT........................................................................................................................................................... 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................TCAGGTATCCCGCGCAA............................. 17 2 12 0.50 6 0 0 0 0 6 0 0 0 0 0 0
......................................................................................................................................................................................................................TTCCCCTTCCTCTAGC................................................. 16 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TCTTCAGGTCCCATT............................................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................CAGGTATCCCGCGCAA............................. 16 2 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GCTCAGGTATCCCGCGCAA............................. 19 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................ATCAGGTACCCCGCGCA.............................. 17 2 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................AGCAATTATCCACTA........................................................................................... 15 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1
.................................TCGATTTTAGCTGTATG..................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
........................................................GTGATCACTGTGAACC............................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGTCTTAGTCTTCGGTGATAAGAGCCAGAGAGGAGCTAAAAGCGACAAACGAGGGACACTAGCGACACTTGAACCGCACTATTCCCCGAGGCCGAGGAGGACGTTAGCTCTTTCGGGCGACAAACGCGGTGGGCCGCTTGTGGTTAGTCAGCTACCCTCACGAGGCGACGTTATCGTTAATCGGTGATTGGAAGACGGTCGAGAAGTCCACGGTAAGGGGAAGGAGGTCGAGGAGTCCACGGGGCGCGTTTGTCTCAATAGACCTCACGGCGGGCGACC
*******************************************************************************************************************.((((((......((((((((..(((((((....(((...........)))..))))).))..))))))))..))))))........((.((.....)).))...*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..........................................................................................................................................................................................................................................................TGTCTCAAGAAACCGCACGGC........ 21 3 2 4.50 9 7 0 0 0 0 2 0 0
..............................................................................................................................................................................................TAAGACGGTCGAGAAGTCCACG................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TTGTCTCAAGAAACCGCACGGC........ 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................AGTCCACGGGGCGCGTTTGTCT........................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0
..........TTCGGTGATAAGAGCCAGAGA........................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................TGGTAGACGGCCAAGAAGTC....................................................................... 20 3 7 0.71 5 0 0 0 0 0 0 5 0
....................ATAGCCAGAGAGGGGCT.................................................................................................................................................................................................................................................. 17 2 8 0.50 4 0 0 4 0 0 0 0 0
......................AGCCAGAGAGGGGCTAT................................................................................................................................................................................................................................................ 17 2 9 0.33 3 0 0 1 0 0 0 0 2
........................CCAGAGAGGGGCTATAA.............................................................................................................................................................................................................................................. 17 2 7 0.29 2 0 0 0 0 2 0 0 0
.......................GCCAGAGAGGGGCTATA............................................................................................................................................................................................................................................... 17 2 11 0.27 3 0 0 0 0 3 0 0 0
....................ATAGCCAGAGAGGGGCTA................................................................................................................................................................................................................................................. 18 2 4 0.25 1 0 0 1 0 0 0 0 0
.......................GCCAGAGAGGGGCTA................................................................................................................................................................................................................................................. 15 1 5 0.20 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................AGAAGGCCACGGTAA............................................................... 15 1 10 0.20 2 0 0 2 0 0 0 0 0
.....................................................................................................................................................................................................................TAAAGGAAAGGAGGTCGATGA............................................. 21 3 6 0.17 1 0 0 0 0 1 0 0 0
....................ATAGCCAGAGAGGGGCTATA............................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................GGTGATTGGAGGACG.................................................................................. 15 1 8 0.13 1 0 0 0 0 0 0 1 0
......................AGCCAGAGAGGGGCT.................................................................................................................................................................................................................................................. 15 1 8 0.13 1 0 0 1 0 0 0 0 0
......................................................................................GGAGGCCGAGGAGGACGT............................................................................................................................................................................... 18 1 8 0.13 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................TCAAGAAGGCCACGGTAA............................................................... 18 2 9 0.11 1 0 0 1 0 0 0 0 0
.............................................................................................................................................GGGTACTCGGCTACCCTCA....................................................................................................................... 19 3 9 0.11 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................AGAAGTTCACGGTAA............................................................... 15 1 20 0.10 2 0 0 2 0 0 0 0 0
......................................................................................CGAGGCCGAGGGGGA.................................................................................................................................................................................. 15 1 20 0.10 2 0 0 0 0 2 0 0 0
................................................................ACTCTTGAACTGCACTA...................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 0 1
.........................................................................................GGCCGAGGAGGACGTGGGC........................................................................................................................................................................... 19 2 11 0.09 1 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................GGACGAGAAGATCACGGTAA............................................................... 20 3 12 0.08 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................CTCAAGAGACCTCGCGG......... 17 2 12 0.08 1 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................................................TCTCAATAGACTTCGCGGA........ 19 3 15 0.07 1 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................TTGGAAGTCGGTCGA............................................................................. 15 1 16 0.06 1 0 0 0 0 0 0 0 1
........................CCAGAGAGGGGCTATA............................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0
....................ATAGCCAGAGAGGGGC................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................GAAGGAGGTCGAATAGT........................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:12900145-12900423 - dsi_18676 TCAGAATCAGAAGCCACTATTCTCGGTCTCTCCTCGATTTT-----CGCTGT--------TTGCTCCCT--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAG--AAAGCCCGCT-------GTTTGCGCCACCCGGCGAACA-------CC-AATCAGTCGATGGGAGTGCTCCGCTGCAATAGCAATTAGCCA--CTAACCTTCTGCCAGCTCTTCAGGTGCCATT---------------------CCCCTTCCTC-CAGCTCCTCAGGTGCCCC--------------------------GCGCAAACAGA-------GTTATCTGGAGT--------GCCGC----------------CCGCTG--G
droSec2 scaffold_1:9728478-9728756 - TCAGAATCAGAAGCCACTATTCTCGGTCTCTCCTCGATTTT-----CGCTGT--------TTGCTCCCT--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAG--AAAGCCCGCT-------GTTTGCGCCACCCGGCGAACA-------CC-AATCAGTCGATGGGAGTGCTCCGCTGCAATAGCAATTAGCCA--CTAACCTTCTGCCAGCTCTTCAGGTGCCATT---------------------CCCCTTCCTC-CAGCTCCTCAGGTGCCCC--------------------------GCGCAAACAGA-------GTTATCTGGAGT--------GCCGC----------------CCGCTG--G
dm3 chr2R:12230751-12231029 - TCAGAATCAAAAGCCCCTGTTCTCGGTCTCTCCTCGATTTT-----CTCTAT--------TTGCTCCCT--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAG--AAAGCCCGCT-------GTTTGCGCCACCCGGCGAACA-------CC-AATCAGTCGATGGGAGTACTCCGCTGCAATAGCAATTAGCCA--CTAACCTTCTGTCAGCTCTTCAGGTGCCATT---------------------CCCCTACCTC-CAGCTCCTCAGGTGCCCC--------------------------TGCCAAACAGA-------GTTATCTGGAGT--------GCCGC----------------CCGCTG--G
droEre2 scaffold_4845:13631147-13631425 + TCAGAATCAGAAGCCCCTGTTCTCGGTCTCTCCTCGATTCT-----CGCTGT--------TTGCTCCCT--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAG--AAAGCCCGCT-------GTTTGCGCCACCCGGCGAACA-------CC-AATCAGTCGATGGGAGTACTCCACAGCAATAGCAATTAGCCA--CTAACCTTCTGCCAGCTCTTCAGGTGCCATT---------------------CCCCCGCCTC-CAACTCCTCAGGTGCCCC--------------------------GGGCAAACGGA-------GTTATCTGGAGT--------GCCGC----------------CCGCTG--G
droYak3 2R:16755103-16755388 + TCAGAATCAGAAGCCCCTGTTCTCGGTCTCTCCTCGACTTT-----CGCTGTTTGCTT-TTAGCTCCCT--GCGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTATTCCTGCAATCGAG--AAAGCCCGCT-------GTTTGCGCCACCAGGCGAACG-------CC-AATCAGTCGATGGGAGTGCTCCACAGCAATAGCAATTAGCCA--CTAACCTTCTGGCAGCTCTTCAGGTGCCATT---------------------CCCCTGCCTC-CAACTCCTCAGGTGCCTT--------------------------GGGCAAACGGA-------GTTATCTAGAGT--------GCCGC----------------CCGCTG--G
droEug1 scf7180000409672:2945365-2945641 + TCAGT-----AAGCCGCCGTT------CTCTCCGCGCTTTT-----CGCCGT--------TTGCTCCCT--ATGATCGCTGTGAACTTGACG---------------------------------TGATAAGAGGGGCAC---CGGCTCCTCCTGCAATCAAAAAAAAGCCTGCT-------GTTTGTTCCACCCGGCGAACA----C-ACC-AATCAGTCGATGGGTGTGCTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTGCCGGGTCTTCAGCTCCTATT-------------------TTCCCCTTCCTC-CAAATCTTCAGGTGGCCC--------------------------GGGCAAACAAA-------CTTATCTAGAGT--------GCCGC-----------------CGCAACGA
droBia1 scf7180000301506:2720302-2720578 + TCAGG------GACCGCCGTT------CTCTCCTCGCCTTT-----TGCCGT--------TCGCTCCCT--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAG--AAAGCCTGCT-------GTTTGTTCCACCCGGCGAACA-------CC-AATCAGTCGATGGGTGTGCTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTGCCGGGTCTTCAGCTCCTGGT---------------------CCTCCCCCTCGCAGCTCTGCAGGTGCCCC--------------------------GGGCAAACACA-----GACTTATCTGGAGTGCTGGAGTGCCGC-----------------CGCAA--G
droTak1 scf7180000416016:818165-818441 - TCAGA------AGTCGCCGAAGC----CTCTCCTCACTTTT-----CGCTGT--------TTGCTCCCT--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAA--AAGGCCTGCT-------GTTTGTTCCACCCGGCGAACA-------CC-AATCAGTCGATGGGTGTGCTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTGCCGGGTCTTCAGCTCTAGGTCCTCCACCTCCTCC----------CTGC---GCAACTCTTCAGGTGCCCC--------------------------GGGCAAACAGA-------CTTATCTGGAGT--------GCCGC-----------------CGCAA--G
droEle1 scf7180000491027:476618-476908 + TCAG------AAGCCTCTGTT------CGCTCCTCGCCTTT-----CGCTGTTCGCTGG--TGCTCCCT--GTGATCGCTGTGAACTTGACG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAA--AGAGCCCGCT-------GTTTGTTCCACACGGCGAGCACCGAC-ACC-AATCAGTCGATGGGTGTGCTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTGGCGGGTCTCCTGCTCCTC------CACCTCCACC---TCTTCCGCTG-------CCTCTTCAGGTGCCCC--------------------------GGGCAAACAGACTTAAAACTTATCTGGAGT--------GCCGC-----------------CGCAA--G
droRho1 scf7180000769565:140655-140927 - TCAGA-----AAGCCTCTGTT------CGCTCCTCGCATTT-----CGCTGT--------TTGCTCCCT--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAA--AGAGCCCGCT-------GTTTGTCCCACCCGGCGAACA-------CC-AATCAGTCGATGGGTGTGCTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTGCCGGGTCTCGAGCTCCTCT------ACCACTACC---TCTTCCGCTG-------CCCCTTCAGGTGCCCC--------------------------CGGCAAACAAA-------CTTATCTGGAGT--------GCCGC-----------------CGCAA--G
droFic1 scf7180000453851:391754-392013 - TCAG------AAGCCCCTGTTG---TGCTCTCCTCGCTTTT---CTCGCTGC--------TTGCTCCCA--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAA--AAAGCCTGCT-------GTTTGTTCCACACGGCGAACA-------CC-AATCAGTCGATGGGTGTGCTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTACCGGGTCTTCAGTTCCTCA---------------------------T-------CCTCTTCAGGTTCCCC---------C----------------GTTCAAACAGA-------CTTATCTGGAGT--------GCCGC-----------------CGCAA--G
droKik1 scf7180000302470:587309-587597 - TCAGA-----AAGCCGCTGTTCTTTG-CTCCACTCGACGCCCGC--CGCTCTGAGCTA-CTTGCTCCCT--GTGATCGCGGTGAACTTGGCG---------------------------------TGATAAGAGGGACTGGGGCT-CTCCTCCTGTAATCGA----AAGCCTGCT-------GTTTGTTCCACCCGGCAAACA-------CCAAATCAGTCGATGGGTGTGCTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTGCCGGGTCTACAGCTCCTC---------------CCACTCTTG-G---------CGTTCTTCAGGTTCCAC----CTCCTC---------------GTGGCAAACAAA-------CTTATCTGGAGT--------GCCGC-----------------TTCAA--G
droAna3 scaffold_13266:15606753-15607053 - TCAGA-----AAGCCGCTGTTGC----CT---TTCGCTCTT-----CGCCGT--------TTGCTCCCTGGGTGATCGCTGTGAACTTGGCG---------------------------------AGATAAG--CGGCTC---CTCCT-CTCCTGTAATCGA----AAGCCTGCT-------GCTTGTTCCACTCGACGAACA-------CCAAATCAGTCGATGGGTGTACTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTAGCGGGTCTTGTGCACCACC---TCCATCTCCACCTTCTTTTC-G---------GGTTCTTGAGGTTTTCCCCACCCCATCCAGGCCACTCCAACGGTGGCAAACACA-------CTTATCTGAAGT--------GCACC-----------------AGCCA--G
droBip1 scf7180000396567:99593-99893 - TCAGA-----AAGCCGCTGTTGCCTTTCGCTCCTCG------------CC-----CTGGTTTGCTCCCTGGGTGATCGCTGTGAACTTGGCG---------------------------------AGATAAG--AGGC---------TCCTCCTGTAATCGA----AAGCCTGCT-------GCTTGTTCCACCCGACGAACA-------CCAAATCAGTCGATGGGTGTACTCCACTGCAATAGCAATTAGCCAACCTAACCTTCTAGCGGGTCTTGTGCTCCTCC---TCCATCTCCACCTTCTTTTC-G---------GGTTCTTAGGACTACCCCCCCCCCACCAAGACCACTTCAACGGTGGCAAACACA-------CTTATCTGAAGT--------GCACC-----------------CGCCA--G
dp5 3:3913739-3914040 + TAAG------AAGCTGCTGTTC--GGGCTCT--------TT-----TGTGATAAGCTGG-T------------TCGCGCTGTGAACTTGGGGCCGCTGCAAGTCAATCGTTCTCGTACTTAATGTTGATAAG--AGCCTC----GCTGCCGCCTGCC----------TGCCTGCTGAGTTTCGTTTGTTCCACGCTAGTAGGAGGTAGGTGC-AATCAGTTGAGTGGAGTATTCC-----GAAAGCAATTAGCCA--CTTG-------CCGCGTTTG-TGT-----GT-----ATC-CCACCTTCTGTTC--CCGC---ACAG----GTAGGTT-TCT--------------------------GGGCAAACAAT-------GTTATCTAGAGT--------GCCCCAACACCCACCCAGTGCACACAA--A
droPer2 scaffold_2:4099500-4099801 + TAAG------AAGCTGCTGTTC--GGGCTCT--------TT-----TGTGATAAGCTGG-A------------TTGCGCTGTGAACTTGGGGCCGCTGCAAGTCAATCGTTCTCGTACTTAATGTTGATAAG--AGCCTC----GCTGCCGCCTGCC----------TGCCTGCTGAGTTTCGTATGTTCCACGCTAGTAGGAGGTAGGTGC-AATCAGTTGAGTGGAGTATTCC-----GAAAGCAATTAGCCA--CTTG-------CCGCGTTTG-TGT-----GT-----ATC-CCACCTTCTGTTC--CCGC---ACAA----GTAGGTT-TCT--------------------------GGGCAAACAAT-------GTTATCTAGAGT--------GCCCCAACACCCACCCAGTGCACACAA--A
droGri2 scaffold_15245:15083971-15084082 + TGCTG------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------CT-GCTCAGTCAATGTTTGTCTGCTCTTCAATTCACAGTTAAGAA--CCACCCGCTTGC--------------------------------------------TGCCTG-CATGTCGTT------ACG--------------------------GGGCAAACAGC-------GTTATCTGAATT--------GAAGC-----------------C---G--A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCAGAATCAGAAGCCACTATTCTCGGTCTCTCCTCGATTTT-----CGCTGT--------TTGCTCCCT--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAG--AAAGCCCGCT-------GTTTGCGCCACCCGGCGAACA-------CC-AATCAGTCGATGGGAGTGCTCCGCTGCAATAGCAATTAGCCA--CTAACCTTCTGCCAGCTCTTCAGGTGCCATT---------------------CCCCTTCCTC-CAGCTCCTCAGGTGCCCC--------------------------GCGCAAACAGA-------GTTATCTGGAGT--------GCCGC----------------CCGCTG--GSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................AATCAGTCGATGGGAGTGCTC......................................................................................................................................................................................................2113.00330000000000000000
.............................................................TGCTCCCT--GTGATCGCTGTGAACTTG.......................................................................................................................................................................................................................................................................................................................................................2612.00200200000000000000
.............................................................TGCTCCCT--GTGATCGCTGTGAACTTGG......................................................................................................................................................................................................................................................................................................................................................2712.00200020000000000000
...............................................................................................................................................................................................................................TGGGAGTGCTCCGCTGCAATAGCAA........................................................................................................................................................................................2511.00100000000001000000
..........................................................................ATCGCTGTGAACTTGGCG---------------------------------...................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................CGCAAACAGA-------GTTATCTG..........................................1811.00110000000000000000
.........................................................................................................................................................................................TGCGCCACCCGGCGAACA-------CC-AATCAGT....................................................................................................................................................................................................................2711.00100010000000000000
............................................................................................................................................................................GCT-------GTTTGCGCCACCC.............................................................................................................................................................................................................................................1611.00100000000001000000
.....................................................................................................................................................................................................................................................................................CAGGTGCCATT---------------------CCCCTTCCT..................................................................................................................2011.00101000000000000000
....................................................................................................................................................................................................................................................GCAATTAGCCA--CTAACCTTCT.....................................................................................................................................................................2111.00100000100000000000
.................................................................................................................................................................................................CCGGCGAACA-------CC-AATCAGTCGATGGGA............................................................................................................................................................................................................2711.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................TGCCCC--------------------------GCGCAAACAGA-------GT................................................1911.00100000000001000000
droSec2
TCAGAATCAGAAGCCACTATTCTCGGTCTCTCCTCGATTTT-----CGCTGT--------TTGCTCCCT--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAG--AAAGCCCGCT-------GTTTGCGCCACCCGGCGAACA-------CC-AATCAGTCGATGGGAGTGCTCCGCTGCAATAGCAATTAGCCA--CTAACCTTCTGCCAGCTCTTCAGGTGCCATT---------------------CCCCTTCCTC-CAGCTCCTCAGGTGCCCC--------------------------GCGCAAACAGA-------GTTATCTGGAGT--------GCCGC----------------CCGCTG--GSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................GCAATCGAG--AAAGCCCGCT-------GG........................................................................................................................................................................................................................................................2111.0011000
dm3
TCAGAATCAAAAGCCCCTGTTCTCGGTCTCTCCTCGATTTT-----CTCTAT--------TTGCTCCCT--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAG--AAAGCCCGCT-------GTTTGCGCCACCCGGCGAACA-------CC-AATCAGTCGATGGGAGTACTCCGCTGCAATAGCAATTAGCCA--CTAACCTTCTGTCAGCTCTTCAGGTGCCATT---------------------CCCCTACCTC-CAGCTCCTCAGGTGCCCC--------------------------TGCCAAACAGA-------GTTATCTGGAGT--------GCCGC----------------CCGCTG--GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................AGTCGATGGGAGTACTCCGCTGC................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AGTCGATGGGAGTACTCCGC...................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011001000
....................................................................................................................................................................................................................................................................ACCTTCTGTCAGCTCTTCA.........................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AACTTGGCG---------------------------------TGATAAG--GGGC......................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................................................................................AGTCGATGGGAGTACTCCG....................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................AACTTGGCG---------------------------------TGATAAG--GG........................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.......................................................................................TGGCG---------------------------------TGATAAG--GGGCTC---C................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................ATGGGAGTACTCCGCTGCAA..............................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................ACCTTCTGTCAGCTCTTCAGG.......................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................ACTTGGCG---------------------------------TGATAAG--GGG.......................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................A--CTAACCTTCTGTCAGCTCTTCAG........................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................AATCAGTCGATGGGAGTACTCCGCTGC................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GA-------GTTATCTGGAGT--------GCCGC----------------CC.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
......................................................................................TTGGCG---------------------------------TGATAAG--GGGCTC---CGGCT............................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................CCTTCTGTCAGCTCTTCAGGTGCCA..................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................TCCCT--GTGATCGCTGTGAACTTGGCG---------------------------------TG.................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TGGCG---------------------------------TGATAAG--GGGCTC---.................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..........................................................................................CG---------------------------------TGATAAG--GGGCTC---CGG..............................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................CGCTGTGAACTTGGCG---------------------------------TGATAAG--..........................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTGGCG---------------------------------TGATAAG--GGGCT.....................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................CC-AATCAGTCGATGGGAGTAC........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.....................................................................................................................................................CTCCTGCAATCGAG--AAAGCCC....................................................................................................................................................................................................................................................................2111.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TCAGGTGCCATT---------------------CCCCTACCTC-CAGC............................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TAT--------TTGCTCCCT--GTGATC...................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GCCCCTGTTCTCGGTCTC..................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................AATCAGTCGATGGGAGTA.........................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................TCCTCGATTTT-----CTCTAT--------TTGCTCCC............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGG..............................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................TTGCTCCCT--GTGATCGCTGTGAAC..........................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................AATCAGTCGATGGGAGTACTC......................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGCCCCTGTTCTCGGTCTCTCCTCGA...........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................GTGAACTTGGCG---------------------------------TGATAAG--G.........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................AATCGAG--AAAGCCCGCT-------G.........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................AACCTTCTGTCAGCTCTTC..........................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................A--CTAACCTTCTGTCAGCTCTTCAGGTGCC...................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATCGCTGTGAACTTGGCG---------------------------------...................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................CCTGCAATCGAG--AAAGCCCG...................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................................................................................................CAGTCGATGGGAGTACTCCGCTGCAAT.............................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
....................................................................T--GTGATCGCTGTGAACTTGGCG---------------------------------TGATA..............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---.................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TTCTGTCAGCTCTTCAGGTGCCATT---------------------...........................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................ACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCT............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................CACCCGGCGAACA-------CC-AATCAGTCGA.................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................GCCA--CTAACCTTCTGTCAGCTC.............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................AATCAGTCGATGGGAGTAC........................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TCGCTGTGAACTTGGCG---------------------------------TGATAAG--G.........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AGTCGATGGGAGTACTCCGCT..................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................ATCAGTCGATGGGAGTACTCCGCTG.................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
..................................................................................GAACTTGGCG---------------------------------TGATAAG--GGGC......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TTGCTCCCT--GTGATCGCTGTG.............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................GATGGGAGTACTCCGCTGCAAT.............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AACTTGGCG---------------------------------TGATAAG--GGGCTC---.................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........AAAGCCCCTGTTCTCGGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droEre2
TCAGAATCAGAAGCCCCTGTTCTCGGTCTCTCCTCGATTCT-----CGCTGT--------TTGCTCCCT--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAG--AAAGCCCGCT-------GTTTGCGCCACCCGGCGAACA-------CC-AATCAGTCGATGGGAGTACTCCACAGCAATAGCAATTAGCCA--CTAACCTTCTGCCAGCTCTTCAGGTGCCATT---------------------CCCCCGCCTC-CAACTCCTCAGGTGCCCC--------------------------GGGCAAACGGA-------GTTATCTGGAGT--------GCCGC----------------CCGCTG--GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................GAACA-------CC-AATCAGTCGATGGGAGT..........................................................................................................................................................................................................2411.0010000100
.........................................................................................................................................................................................................................AGTCGATGGGAGTACTCCACAGCAATAG...........................................................................................................................................................................................2811.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGAGT--------GCCGC----------------CCGCTG--G2111.0010000010
droYak3
TCAGAATCAGAAGCCCCTGTTCTCGGTCTCTCCTCGACTTT-----CGCTGTTTGCTT-TTAGCTCCCT--GCGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTATTCCTGCAATCGAG--AAAGCCCGCT-------GTTTGCGCCACCAGGCGAACG-------CC-AATCAGTCGATGGGAGTGCTCCACAGCAATAGCAATTAGCCA--CTAACCTTCTGGCAGCTCTTCAGGTGCCATT---------------------CCCCTGCCTC-CAACTCCTCAGGTGCCTT--------------------------GGGCAAACGGA-------GTTATCTAGAGT--------GCCGC----------------CCGCTG--GSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................TCCCT--GCGATCGCTGTGAACTTGGCG---------------------------------...................................................................................................................................................................................................................................................................................................................2615.00500000000005
...............................................................................................................................................................................................................................................................................................................................................CTT--------------------------GGGCAAACGGA-------GTTATCT...........................................2111.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GTTATCTAGAGT--------GCCGC----------------C........1811.00100001000000
.............................................................................................................................................................................................................................................................................................................................TC-CAACTCCTCAGGTGCCTT--------------------------GGGCA...............................................................2511.00101000000000
......................................................................................................................................................................................................................................................................CTTCTGGCAGCTCTTCAGG.......................................................................................................................................................1911.00101000000000
......................................................................................................................................................................................................................................................AATTAGCCA--CTAACCTTCTGGCAGCT..............................................................................................................................................................2611.00100000100000
.....................................................................................................................................................................................................................................................................................................................................CCTCAGGTGCCTT--------------------------GGGCAAACGGA-------..................................................2411.00101000000000
droEug1
TCAGT-----AAGCCGCCGTT------CTCTCCGCGCTTTT-----CGCCGT--------TTGCTCCCT--ATGATCGCTGTGAACTTGACG---------------------------------TGATAAGAGGGGCAC---CGGCTCCTCCTGCAATCAAAAAAAAGCCTGCT-------GTTTGTTCCACCCGGCGAACA----C-ACC-AATCAGTCGATGGGTGTGCTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTGCCGGGTCTTCAGCTCCTATT-------------------TTCCCCTTCCTC-CAAATCTTCAGGTGGCCC--------------------------GGGCAAACAAA-------CTTATCTAGAGT--------GCCGC-----------------CGCAACGASizeHit CountTotal NormTotal
No Reads
droBia1
TCAGG------GACCGCCGTT------CTCTCCTCGCCTTT-----TGCCGT--------TCGCTCCCT--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAG--AAAGCCTGCT-------GTTTGTTCCACCCGGCGAACA-------CC-AATCAGTCGATGGGTGTGCTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTGCCGGGTCTTCAGCTCCTGGT---------------------CCTCCCCCTCGCAGCTCTGCAGGTGCCCC--------------------------GGGCAAACACA-----GACTTATCTGGAGTGCTGGAGTGCCGC-----------------CGCAA--GSizeHit CountTotal NormTotal
No Reads
droTak1
TCAGA------AGTCGCCGAAGC----CTCTCCTCACTTTT-----CGCTGT--------TTGCTCCCT--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAA--AAGGCCTGCT-------GTTTGTTCCACCCGGCGAACA-------CC-AATCAGTCGATGGGTGTGCTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTGCCGGGTCTTCAGCTCTAGGTCCTCCACCTCCTCC----------CTGC---GCAACTCTTCAGGTGCCCC--------------------------GGGCAAACAGA-------CTTATCTGGAGT--------GCCGC-----------------CGCAA--GSizeHit CountTotal NormTotal
No Reads
droEle1
TCAG------AAGCCTCTGTT------CGCTCCTCGCCTTT-----CGCTGTTCGCTGG--TGCTCCCT--GTGATCGCTGTGAACTTGACG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAA--AGAGCCCGCT-------GTTTGTTCCACACGGCGAGCACCGAC-ACC-AATCAGTCGATGGGTGTGCTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTGGCGGGTCTCCTGCTCCTC------CACCTCCACC---TCTTCCGCTG-------CCTCTTCAGGTGCCCC--------------------------GGGCAAACAGACTTAAAACTTATCTGGAGT--------GCCGC-----------------CGCAA--GSizeHit CountTotal NormTotal
No Reads
droRho1
TCAGA-----AAGCCTCTGTT------CGCTCCTCGCATTT-----CGCTGT--------TTGCTCCCT--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAA--AGAGCCCGCT-------GTTTGTCCCACCCGGCGAACA-------CC-AATCAGTCGATGGGTGTGCTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTGCCGGGTCTCGAGCTCCTCT------ACCACTACC---TCTTCCGCTG-------CCCCTTCAGGTGCCCC--------------------------CGGCAAACAAA-------CTTATCTGGAGT--------GCCGC-----------------CGCAA--GSizeHit CountTotal NormTotal
No Reads
droFic1
TCAG------AAGCCCCTGTTG---TGCTCTCCTCGCTTTT---CTCGCTGC--------TTGCTCCCA--GTGATCGCTGTGAACTTGGCG---------------------------------TGATAAG--GGGCTC---CGGCTCCTCCTGCAATCGAA--AAAGCCTGCT-------GTTTGTTCCACACGGCGAACA-------CC-AATCAGTCGATGGGTGTGCTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTACCGGGTCTTCAGTTCCTCA---------------------------T-------CCTCTTCAGGTTCCCC---------C----------------GTTCAAACAGA-------CTTATCTGGAGT--------GCCGC-----------------CGCAA--GSizeHit CountTotal NormTotal
No Reads
droKik1
TCAGA-----AAGCCGCTGTTCTTTG-CTCCACTCGACGCCCGC--CGCTCTGAGCTA-CTTGCTCCCT--GTGATCGCGGTGAACTTGGCG---------------------------------TGATAAGAGGGACTGGGGCT-CTCCTCCTGTAATCGA----AAGCCTGCT-------GTTTGTTCCACCCGGCAAACA-------CCAAATCAGTCGATGGGTGTGCTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTGCCGGGTCTACAGCTCCTC---------------CCACTCTTG-G---------CGTTCTTCAGGTTCCAC----CTCCTC---------------GTGGCAAACAAA-------CTTATCTGGAGT--------GCCGC-----------------TTCAA--GSizeHit CountTotal NormTotal
No Reads
droAna3
TCAGA-----AAGCCGCTGTTGC----CT---TTCGCTCTT-----CGCCGT--------TTGCTCCCTGGGTGATCGCTGTGAACTTGGCG---------------------------------AGATAAG--CGGCTC---CTCCT-CTCCTGTAATCGA----AAGCCTGCT-------GCTTGTTCCACTCGACGAACA-------CCAAATCAGTCGATGGGTGTACTCCACTGCAATAGCAATTAGCCA--CTAACCTTCTAGCGGGTCTTGTGCACCACC---TCCATCTCCACCTTCTTTTC-G---------GGTTCTTGAGGTTTTCCCCACCCCATCCAGGCCACTCCAACGGTGGCAAACACA-------CTTATCTGAAGT--------GCACC-----------------AGCCA--GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................GTGTACTCCACTGCAATAGCAATTAG....................................................................................................................................................................................2611.001010000
.........................................................................................................................................................................................................................................CCACTGCAATAGCAATTAGCC..................................................................................................................................................................................2111.001000010
...................................................................................................................................................................................................................................................................................................................................................................................CACA-------CTTATCTGAAGT--------GCACC-----------------AGCCA--G2711.001100000
droBip1
TCAGA-----AAGCCGCTGTTGCCTTTCGCTCCTCG------------CC-----CTGGTTTGCTCCCTGGGTGATCGCTGTGAACTTGGCG---------------------------------AGATAAG--AGGC---------TCCTCCTGTAATCGA----AAGCCTGCT-------GCTTGTTCCACCCGACGAACA-------CCAAATCAGTCGATGGGTGTACTCCACTGCAATAGCAATTAGCCAACCTAACCTTCTAGCGGGTCTTGTGCTCCTCC---TCCATCTCCACCTTCTTTTC-G---------GGTTCTTAGGACTACCCCCCCCCCACCAAGACCACTTCAACGGTGGCAAACACA-------CTTATCTGAAGT--------GCACC-----------------CGCCA--GSizeHit CountTotal NormTotal
No Reads
dp5
TAAG------AAGCTGCTGTTC--GGGCTCT--------TT-----TGTGATAAGCTGG-T------------TCGCGCTGTGAACTTGGGGCCGCTGCAAGTCAATCGTTCTCGTACTTAATGTTGATAAG--AGCCTC----GCTGCCGCCTGCC----------TGCCTGCTGAGTTTCGTTTGTTCCACGCTAGTAGGAGGTAGGTGC-AATCAGTTGAGTGGAGTATTCC-----GAAAGCAATTAGCCA--CTTG-------CCGCGTTTG-TGT-----GT-----ATC-CCACCTTCTGTTC--CCGC---ACAG----GTAGGTT-TCT--------------------------GGGCAAACAAT-------GTTATCTAGAGT--------GCCCCAACACCCACCCAGTGCACACAA--ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................CT--------TT-----TGTGATAAGCTGG-T------------TCG....................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................CAATTAGCCA--CTTG-------CCGCGTTTG-..........................................................................................................................................................2311.0010100000000
droPer2
TAAG------AAGCTGCTGTTC--GGGCTCT--------TT-----TGTGATAAGCTGG-A------------TTGCGCTGTGAACTTGGGGCCGCTGCAAGTCAATCGTTCTCGTACTTAATGTTGATAAG--AGCCTC----GCTGCCGCCTGCC----------TGCCTGCTGAGTTTCGTATGTTCCACGCTAGTAGGAGGTAGGTGC-AATCAGTTGAGTGGAGTATTCC-----GAAAGCAATTAGCCA--CTTG-------CCGCGTTTG-TGT-----GT-----ATC-CCACCTTCTGTTC--CCGC---ACAA----GTAGGTT-TCT--------------------------GGGCAAACAAT-------GTTATCTAGAGT--------GCCCCAACACCCACCCAGTGCACACAA--ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................GTTGAGTGGAGTATTCC-----GAAAGCA.........................................................................................................................................................................................2411.001000001
droGri2
TGCTG------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------CT-GCTCAGTCAATGTTTGTCTGCTCTTCAATTCACAGTTAAGAA--CCACCCGCTTGC--------------------------------------------TGCCTG-CATGTCGTT------ACG--------------------------GGGCAAACAGC-------GTTATCTGAATT--------GAAGC-----------------C---G--ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................GTT------ACG--------------------------GGGCAAACAGC-------GTTATC............................................2311.00101
......................................................................................................................................................................................................................................................................................................................................GTT------ACG--------------------------GGGCAAACAGC-------GTT...............................................2011.00101

Generated: 05/19/2015 at 03:52 AM