dsi_18657

Name	Class	Family	Strand
DNAREP1_DYak	RC	Helitron	-
Hopers2	DNA	hAT-hobo	+

TGAACTTGGAACACCGAAAGGGAACGTCGTTTGTGATGGGACATCAAACGGCAAGTGAAAGTTAATTTAAGTGCAGGCAAACTTGTTAAGCAAAGAAAATCCGCACTTTTAACCGAAGGCCTTCAAGAGATATGATATCATAACTATTCCCGTTACTCGTATGATTCGCTTAATACGAATCTGTATACTCTATAAAGTATATATATTCTGGATCAGAAACATTAGCCGAGTCGACCTGGTCATGTGCCCG ************************************************((.(((((..(((((...((((((.((....(((........))).....))))))))))))).(((....)))...((.((((....)))).)).......))))).))..((((((.......))))))...(((((......)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
................................................................................................................................................................................................TAAAGTATATATATTCTGGATCAGAA................................	26	0	1	1.00	1	1	0
.............................TTTGTGATGGGACATCAAACGGCAAGTGA................................................................................................................................................................................................	29	0	1	1.00	1	1	0
...............................TGTGATGTGACGTCGAAC.........................................................................................................................................................................................................	18	3	20	0.05	1	1	0
...........CACTGACAGGGAACGT...............................................................................................................................................................................................................................	16	2	20	0.05	1	0	1

ACTTGAACCTTGTGGCTTTCCCTTGCAGCAAACACTACCCTGTAGTTTGCCGTTCACTTTCAATTAAATTCACGTCCGTTTGAACAATTCGTTTCTTTTAGGCGTGAAAATTGGCTTCCGGAAGTTCTCTATACTATAGTATTGATAAGGGCAATGAGCATACTAAGCGAATTATGCTTAGACATATGAGATATTTCATATATATAAGACCTAGTCTTTGTAATCGGCTCAGCTGGACCAGTACACGGGC ************************************************((.(((((..(((((...((((((.((....(((........))).....))))))))))))).(((....)))...((.((((....)))).)).......))))).))..((((((.......))))))...(((((......)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	M024 male body	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	M053 female body
..............................................................................................................TTCGCTTCCAGATGTTCTC.........................................................................................................................	19	3	11	0.64	7	2	0	0	0	5	0	0	0	0
.........................................................................................CGTTTCTTTTATGCGTGAAA.............................................................................................................................................	20	1	2	0.50	1	0	0	0	1	0	0	0	0	0
.................................................................................................TTAGGCGTGTACATTGGGTTC....................................................................................................................................	21	3	2	0.50	1	0	1	0	0	0	0	0	0	0
..............................................................................................................TTCGCTTCCAGATGTTCTCT........................................................................................................................	20	3	4	0.50	2	2	0	0	0	0	0	0	0	0
....................................................................................................................................................GGGCAATGGGCAAACTAAG...................................................................................	19	2	2	0.50	1	0	0	1	0	0	0	0	0	0
...............................................................................................................TCGCTTCCAGATGTTCTC.........................................................................................................................	18	3	20	0.35	7	7	0	0	0	0	0	0	0	0
...........................................................................................................................................TTTAGATTAGGGCAATGAGCAT.........................................................................................	22	3	3	0.33	1	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................AGACCTAGTCTTTCT.............................	15	1	5	0.20	1	0	0	0	0	0	0	1	0	0
.............GGGCTTCCCTTGCAGCATA..........................................................................................................................................................................................................................	19	3	8	0.13	1	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................GCTAAGCTGGACGAGTA.......	17	2	10	0.10	1	0	0	0	0	0	0	0	1	0
...........................................AGCTAGCCGTTCAGTTTCAA...........................................................................................................................................................................................	20	3	11	0.09	1	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................ATATATTTCATATATATAAGACCTAGTCT.................................	29	1	16	0.06	1	0	0	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	2r:2938214-2938463 -	dsi_18657	TG---------AACTTGG----------AACACCGAAAGGGAACGT-------CGTTTGTGATGGGACATCAAACGGCAAGTGAAAGTTAATTTAAG---TGC--AGGCAAACT-------------------------------------------------------------------TGTTAAGCAAAGAAA-ATCCGCACTTTTAACCGAAGG--C-------------------------------------CTTCAAGAGATATGATATCATAACTATTCCCGTTACTCGTA--TG------------------ATTCGCTTAA------------------------TACGAA--TCTG--TATACTCTATAAAGTATATATATTCTGGATCAG--AAA---CATTAGCCGAGTCGACC-TGGTCATGTG--CC----CG
droSec2	scaffold_26:578606-578853 -		TG---------AACTGGG----------AACACCGAAAGGGAACGT-------CGTTTGTGATGGGACATCAAACGGCAAGTGAAAGTTAATTTAAG---TGC---GGCAAACT-------------------------------------------------------------------TGTTAAGCAAAGAAA-ATCCGCACTTTTAACCGAAGG--C-------------------------------------CTTCAAGAGATATGATATCATAACTATTCCCGTTACTCGTA--TG------------------ATTCGCTTAA------------------------TACGAA--TCTG--TACACTCTATAAAGTATATATATTCTTGATCAG--AAT---CATTAGCC-AGTCGACT-TGGTCATGTG--CC----CG
dm3	chr2R:1936445-1936718 -		TG---------AACTTGG----------AACACCGAAAGGGATGGTTCGTGAACATTCGTGATGGAAAATCAAATGGCAAGTGAAAGTTCATTTAAA---TGC--AGGCTAACT-------------------------------------------------------------------TTTTACGCAAAGCAA-ACCCGCACTTTTAACCGAATG--C-------------------------------------CTTCAAGGGATATGATATCATAACTATTCCCGTTGCTCGTA--T-GACTAAAGGGAGAATCAGATTCGCTTAA------------------------TACGAA--TCTA--TATACTCTATAAAGTATATATATTCTTGATCAT--GAT---CATTAGCCAAGTCGATC-TGGTCATGTCC--C----CG
droEre2	scaffold_4929:20393022-20393232 +		TA---------GAGCTGG----------AAAACCGAAGGCGAACTT-------CGATCCTGATGGGACATCAAATGGCAGGTGAAAGCTAATTTAAA---TGC--AGGCAAACT-------------------------------------------------------------------TGTTACCCAATATAA-ATGTCCACTTTTAACCAAAGG--G-------------------------------------CTTCCAGTGGCATAATTTGATAA------CCAACACTATCA--T-C--------------------------------------ATAAAACGGGCAGAAGGAAGCTAT----------------------------------------T---TATTATCCGAGTCGATC-TAGCCATGTTT--------G
droYak3	2L:20552404-20552610 +		TG---------AAGTTGA----------AAAACCAAAAGCGAACTT-------TGCTCGTGATAGCACATCAAATGGCAAACGAAATTAAATTTTAA---TTC--AGGCAAACT-------------------------------------------------------------------TGTTAAGCGAAGTAA-ACTCGGACATTTAACCAATGG--G-------------------------------------CTTCAAGTGATATAAT------ACTATTCCCGTTACTCGTA--T-AGTAAAATGGAATACTATATTGGTA-------------------------------------TT-------------------------------------------------CCGACTTTATCGGAGCCATTTCC--------G
droEug1	scf7180000408987:416180-416415 +		ATTTACATATAGA----------------------------------------------------------------------------------------------GCAAAAA---CGTCAAGCTTCGCAGA--CTTAGCAGGAAGCTTC-----CAAGGTTGATGTGTTTGAAATATGCTTTTTATCATTA---------------------------------------------------------------TT---------------------TATTATACCCGTTACTAGTA--G-AGTAAAAGGGTATACTAGATTCGTTGAAAA-------GTATGTAACAGATAGAAGG--TCGTTT--CCGACCCTATAAAGTATATATATTCTTGATCAG--GAT---CAATAGCGAAGTCGATT-GAGCCATGTCCGTCT----G
droBia1	scf7180000301495:1006317-1006585 +		TG---------TAATGGG---ACATGCCAACAGCGAAAAAAAAGAT--------------------------------------CAGATAATTTAAG---T------------T-------------------------------------------------------------------TGTTATTAAAAGAGG-ACCAGGCAGT-TTAAATTGTGCCT---------AGCGAA-GCATA-TTTATTATGCTTAT-----AA-----------AAATAATTATACCCGTTACTCGTA--G-AGAAAAAGGGTATACTAGATTCGTCGGAAA-------GTATGTAACAAGTAGGAGGAATCGTTT--CCGACTCCATAAAGGATATATATTCTTGATCAG--GAT---CACTAACCGAGTCGATC-TAGCCATGTCCGTCTGCCTG
droTak1	scf7180000411042:3464-3728 -		GA---------AC-TA----------------CAAAAATTATACAT-------TTTTTGT------CCAATAATCTACGAGAGAAAATTAATTTAAAAAACCA--ATTTAATATAATA---A-----------AGAAAA------------GCAATCAAGTAACATTTATTT---------AG----ACAAA-AA-----ATCATG--------------------------------------------------GT---------------------TTTTATACCCGTTACTCGTA--G-AGTAAAAGGGTATACTAGATTCGTGCAAAA-------GTATGTAACAGCTAGAAGGAAGCGTTT--CCGACCCAATAAAGTATATATATTCTTGATCAG--GGT---CACTAGCCGAGTCGATC-TAGCCATGTCC--------G
droEle1	scf7180000490471:188-388 +		GC---------AAGTGGG-------------------------------------------------------------------TGTCAATTTGTATTATTT--AATTAAAGT-------------------------------------------------------------------AATTAAGTAAAAGAAATAATCCAT---AAAACTATTACCA---------CTTAAA-GCAATATTT-T---GC---AT---------------------TTTCAAAATTGTTATTAATA--AG------------------AT--GTTT-----------------------TATAAAAAATTGCTA--TAATTACTATAAAGTATACATATTCTTGATCAG--CAT---CACTAGGAGAGTCGATC-TAGCCATGTCC--------G
droRho1	scf7180000768132:590-825 -		CA---------T----------------------------------------------------------CAAAAG---ATTGAAAATGCATTTGGC---TGAATAAGAAAGCA-------------------------------------------------------------------TTTTGATCATAGGAA-TACTTCAC---CAAATTAAAG--C---------ATTAAAGGTAT---GG-A---AC---AT---------------------TTTTATACCCGTTACTCGTA--G-AGTAAAAGGGTATATTGTATTCGTGCAAAA-------GTATGTAACAGCTAGAAGGAAGCGTTT--CCGACCCTATAAAGTATATATATTCTTGATCAG--GAT---CACTAGCCGAGTCGATA-TAGCCATGTCC--------G
droFic1	scf7180000452050:8182-8431 -		TG---------AATGGGA------------AAGCCCACTCGAAAAC-------AGTTCATGTTGCGAAGTCGAATAGAGAGTTCAAATTAAATTCAT---TTG--TACTAAGCC-------------------------------------------------------------------CGTTAGCTCTATT----TCAGAATTGACATCTCAAGT--C-----------------------------------A-CTTTAAATGATATATTGCTTTTAGTATT------GCTTGGA--G--------------CCCAGTTTCGCCTT-----------------------AGGCTTCTTATTTA--CCGTCCCATCAAAGCATGCGTTTACTTTTTAAATGGTATACTAGTATATGGGTGTGAC-TGGGTGTTCTC--------G
droKik1	scf7180000302441:1413331-1413491 +		CA---------AGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAGTATTGGAA-ATCCTCACCT--------------------------------------------------T---------------------TATTATACCCTT-----G-----------CAGGGTATTATAATTTCAGTCAGAA-------GTTTGCAACGCAGTGAAGGAGACGTTT--TCGACCCCATAAAGTATATATATTCTTGATCAG--CAT---CAACAGCCGAGTCGATC-TAGCCATGTCC--------G
droAna3	scaffold_6870:1175-1349 -		TT---------AAGT--------------------------------------------------------------------------------------AC--TAGATAAAC-------------------------------------------------------------------TTTTAATAAATATAA-ATCCGTTTC--------------------------------------------------AT---------------------TTTTATACCCTT-----GCA--G-------AGGGTATTATAATTTTTGTCAAAA-------GTGTGCAACGCAGTGAAGGAGACCTCT--CCGACCCTATAAAGTATATATATTCTTGATCAG--GAT---CACCTCCTGAGTCGATA-TGAGCATGTCC--------G
droBip1	scf7180000391529:492-627 -		AA---------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--A-------------------------------------CCTTAAAAGGTATGATAAT------------------------------------TATTATAATTTTGGTCAAAA-------GTGTGCAACGCAGTGAAGGAGACATCT--CCGACCCTATAAAGTATATATATTCTTGATCAG--AAT---CACCTCCTGAGTTGATA-TGAGCATGTCC--------G
dp5	Unknown_singleton_424:886-1080 +		TT---------AAGCGAAGGCTGAACCC-----------------------------------------------------------------------------------ATC-------------------------------------------------------------------GGCTGAGT----GAA-AATTGTACCC-CAACTGCCGT--CCAACAGAAAATTAAA-GT------------TC---GT---------------------TTTTATACCCGATACTCA----------------------------------AA-------ATGAGTAACGTCCAGAAGGAATCGTTT--CCGACCCCATAAAGTATATATATTCTTGATCAG--CAT---CAATAGCCGAGTCGATT-GAGCCATGTCTGTCTGTCCG
droPer2	scaffold_54:18315-18527 -		GT---------TAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCCAC-ACTTGCAATTTTGATTTCACT--C---------ATTAAA-GTAC-------------------------------ATATCGTAATTATACCCGATACTCAAAATG-AGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTT--CCGACCCCATAAAGTATATATATTCTTGATCAG--CAT---CAATAGCCGAGTCGATT-GAGCCATGTCTGTCTGTCCG
droWil2	scf2_1100000004943:1017379-1017481 -		TT---------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATA--TA------------------TTTTGATTAA------------------------CAAAAA-CCCTATAACGACTCTATAAAGTGTATATATTCTTGATCAG--CAC---GAAAAGCTGAGTCGATA-TAGCCATGTCGGCCT----G
droVir3	scaffold_12411:898-1078 -		AA---------AGGC---------------------------------------------------------------------AAGATAATCTAAA---TAC--AGGTTAAC---------------------------------------------------------------------------CA----------------------------------------ATCAGA-GTCCG--------------AT---------------------TTTTACACCC-----TCGCA--G-------AGAGTATTATAATTTTGTCGTGAA-------ATGTGTAACGCATGGAAGGAGACATCT--CCCACCCCATAAAGTATATATATTCTTGATCAG--CAT---CAACAGCCGAGTCGATA-TAGCCATATTCGTCT----T
droMoj3	scaffold_6680:24009382-24009480 +		CT---------GTTTTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACTCTTC--TT------------------CGTCTCTT--------------------------------TAGCTG--TATACCCAATAAATTATATATATTCTTGGTCAG--GAC---TACGAGCCGAGTTGATC-TAGTCATGTCC--------G
droGri2	scaffold_14853:735618-735692 +		GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATGT-------------------------AACCCCATAAAGTATATACATTCTCGATCAG--GGT---CAACAGCCGAGTCGATA-TAGCCATATCCGTCC----G

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TG---------AACTTGG----------AACACCGAAAGGGAACGT-------CGTTTGTGATGGGACATCAAACGGCAAGTGAAAGTTAATTTAAG---TGC--AGGCAAACT-------------------------------------------------------------------TGTTAAGCAAAGAAA-ATCCGCACTTTTAACCGAAGG--C-------------------------------------CTTCAAGAGATATGATATCATAACTATTCCCGTTACTCGTA--TG------------------ATTCGCTTAA------------------------TACGAA--TCTG--TATACTCTATAAAGTATATATATTCTGGATCAG--AAA---CATTAGCCGAGTCGACC-TGGTCATGTG--CC----CG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATATATTCTGGATCAG--AA..........................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................TTTGTGATGGGACATCAAACGGCAAGTGA............................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

TG---------AACTGGG----------AACACCGAAAGGGAACGT-------CGTTTGTGATGGGACATCAAACGGCAAGTGAAAGTTAATTTAAG---TGC---GGCAAACT-------------------------------------------------------------------TGTTAAGCAAAGAAA-ATCCGCACTTTTAACCGAAGG--C-------------------------------------CTTCAAGAGATATGATATCATAACTATTCCCGTTACTCGTA--TG------------------ATTCGCTTAA------------------------TACGAA--TCTG--TACACTCTATAAAGTATATATATTCTTGATCAG--AAT---CATTAGCC-AGTCGACT-TGGTCATGTG--CC----CG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAG--AAT---C.....................................	24	9	0.11	1	1	0	0	0

dm3

TG---------AACTTGG----------AACACCGAAAGGGATGGTTCGTGAACATTCGTGATGGAAAATCAAATGGCAAGTGAAAGTTCATTTAAA---TGC--AGGCTAACT-------------------------------------------------------------------TTTTACGCAAAGCAA-ACCCGCACTTTTAACCGAATG--C-------------------------------------CTTCAAGGGATATGATATCATAACTATTCCCGTTGCTCGTA--T-GACTAAAGGGAGAATCAGATTCGCTTAA------------------------TACGAA--TCTA--TATACTCTATAAAGTATATATATTCTTGATCAT--GAT---CATTAGCCAAGTCGATC-TGGTCATGTCC--C----CG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................................................................................................................CCGAATG--C-------------------------------------CTTCAAGGGATAT.................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ACTTGG----------AACACCGAAAGGGA......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................GTTGCTCGTA--T-GACTAAAGGG.......................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................TGC--AGGCTAACT-------------------------------------------------------------------TTTTACGCAAAGCAA-AC.........................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TAACTATTCCCGTTGCTCGTA--...................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TTAA------------------------TACGAA--TCTA--TATACTCTATA....................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................AGTATATATATTCTTGATCAT--T...........................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATC-TGGTCATGTC..........	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATATATTCTTGA..................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TA---------GAGCTGG----------AAAACCGAAGGCGAACTT-------CGATCCTGATGGGACATCAAATGGCAGGTGAAAGCTAATTTAAA---TGC--AGGCAAACT-------------------------------------------------------------------TGTTACCCAATATAA-ATGTCCACTTTTAACCAAAGG--G-------------------------------------CTTCCAGTGGCATAATTTGATAA------CCAACACTATCA--T-C--------------------------------------ATAAAACGGGCAGAAGGAAGCTAT----------------------------------------T---TATTATCCGAGTCGATC-TAGCCATGTTT--------G	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

TG---------AAGTTGA----------AAAACCAAAAGCGAACTT-------TGCTCGTGATAGCACATCAAATGGCAAACGAAATTAAATTTTAA---TTC--AGGCAAACT-------------------------------------------------------------------TGTTAAGCGAAGTAA-ACTCGGACATTTAACCAATGG--G-------------------------------------CTTCAAGTGATATAAT------ACTATTCCCGTTACTCGTA--T-AGTAAAATGGAATACTATATTGGTA-------------------------------------TT-------------------------------------------------CCGACTTTATCGGAGCCATTTCC--------G	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................AAATTTTAA---TTC--AGGG...................................................................................................................................................................................................................................................................................................................................................	16	19	0.05	1	0	0	0	0	0	0	0	0	0	0	1

droEug1

ATTTACATATAGA----------------------------------------------------------------------------------------------GCAAAAA---CGTCAAGCTTCGCAGA--CTTAGCAGGAAGCTTC-----CAAGGTTGATGTGTTTGAAATATGCTTTTTATCATTA---------------------------------------------------------------TT---------------------TATTATACCCGTTACTAGTA--G-AGTAAAAGGGTATACTAGATTCGTTGAAAA-------GTATGTAACAGATAGAAGG--TCGTTT--CCGACCCTATAAAGTATATATATTCTTGATCAG--GAT---CAATAGCGAAGTCGATT-GAGCCATGTCCGTCT----G	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TG---------TAATGGG---ACATGCCAACAGCGAAAAAAAAGAT--------------------------------------CAGATAATTTAAG---T------------T-------------------------------------------------------------------TGTTATTAAAAGAGG-ACCAGGCAGT-TTAAATTGTGCCT---------AGCGAA-GCATA-TTTATTATGCTTAT-----AA-----------AAATAATTATACCCGTTACTCGTA--G-AGAAAAAGGGTATACTAGATTCGTCGGAAA-------GTATGTAACAAGTAGGAGGAATCGTTT--CCGACTCCATAAAGGATATATATTCTTGATCAG--GAT---CACTAACCGAGTCGATC-TAGCCATGTCCGTCTGCCTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GA---------AC-TA----------------CAAAAATTATACAT-------TTTTTGT------CCAATAATCTACGAGAGAAAATTAATTTAAAAAACCA--ATTTAATATAATA---A-----------AGAAAA------------GCAATCAAGTAACATTTATTT---------AG----ACAAA-AA-----ATCATG--------------------------------------------------GT---------------------TTTTATACCCGTTACTCGTA--G-AGTAAAAGGGTATACTAGATTCGTGCAAAA-------GTATGTAACAGCTAGAAGGAAGCGTTT--CCGACCCAATAAAGTATATATATTCTTGATCAG--GGT---CACTAGCCGAGTCGATC-TAGCCATGTCC--------G	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GC---------AAGTGGG-------------------------------------------------------------------TGTCAATTTGTATTATTT--AATTAAAGT-------------------------------------------------------------------AATTAAGTAAAAGAAATAATCCAT---AAAACTATTACCA---------CTTAAA-GCAATATTT-T---GC---AT---------------------TTTCAAAATTGTTATTAATA--AG------------------AT--GTTT-----------------------TATAAAAAATTGCTA--TAATTACTATAAAGTATACATATTCTTGATCAG--CAT---CACTAGGAGAGTCGATC-TAGCCATGTCC--------G	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CA---------T----------------------------------------------------------CAAAAG---ATTGAAAATGCATTTGGC---TGAATAAGAAAGCA-------------------------------------------------------------------TTTTGATCATAGGAA-TACTTCAC---CAAATTAAAG--C---------ATTAAAGGTAT---GG-A---AC---AT---------------------TTTTATACCCGTTACTCGTA--G-AGTAAAAGGGTATATTGTATTCGTGCAAAA-------GTATGTAACAGCTAGAAGGAAGCGTTT--CCGACCCTATAAAGTATATATATTCTTGATCAG--GAT---CACTAGCCGAGTCGATA-TAGCCATGTCC--------G	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TG---------AATGGGA------------AAGCCCACTCGAAAAC-------AGTTCATGTTGCGAAGTCGAATAGAGAGTTCAAATTAAATTCAT---TTG--TACTAAGCC-------------------------------------------------------------------CGTTAGCTCTATT----TCAGAATTGACATCTCAAGT--C-----------------------------------A-CTTTAAATGATATATTGCTTTTAGTATT------GCTTGGA--G--------------CCCAGTTTCGCCTT-----------------------AGGCTTCTTATTTA--CCGTCCCATCAAAGCATGCGTTTACTTTTTAAATGGTATACTAGTATATGGGTGTGAC-TGGGTGTTCTC--------G	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CA---------AGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAGTATTGGAA-ATCCTCACCT--------------------------------------------------T---------------------TATTATACCCTT-----G-----------CAGGGTATTATAATTTCAGTCAGAA-------GTTTGCAACGCAGTGAAGGAGACGTTT--TCGACCCCATAAAGTATATATATTCTTGATCAG--CAT---CAACAGCCGAGTCGATC-TAGCCATGTCC--------G	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TT---------AAGT--------------------------------------------------------------------------------------AC--TAGATAAAC-------------------------------------------------------------------TTTTAATAAATATAA-ATCCGTTTC--------------------------------------------------AT---------------------TTTTATACCCTT-----GCA--G-------AGGGTATTATAATTTTTGTCAAAA-------GTGTGCAACGCAGTGAAGGAGACCTCT--CCGACCCTATAAAGTATATATATTCTTGATCAG--GAT---CACCTCCTGAGTCGATA-TGAGCATGTCC--------G	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................................................................TCAAAA-------GTGTGCAACGCAGTGAAGGAGA......................................................................................	28	20	0.85	17	0	0	0	0	17	0
...........................................................................................................................................................................................................................................................................................................................................................ACGCAGTGAAGGAGACCTCT--C..............................................................................	21	20	0.20	4	0	0	0	0	0	4
..........................................................................................................................................................................................................................................................................................................................................................AACGCAGTGAAGGAGACCTCT--CCGAC..........................................................................	26	20	0.10	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTGCAACGCAGTGAAGGAGACCTCT--C..............................................................................	26	20	0.10	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TGTGCAACGCAGTGAAGGAGACCTCT--C..............................................................................	27	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................T---CACCTCCTGAGTCGATA-TGAGC...............	23	20	0.05	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................TAATTTTTGTCAAAA-------GTGTGCAAC...................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................ACGCAGTGAAGGAGACCTCT--CCGACC.........................................................................	26	20	0.05	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAG--GAT---CACCTC................................	22	20	0.05	1	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................ACGCAGTGAAGGAGACCTCT--CCGAC..........................................................................	25	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TGTCAAAA-------GTGTGCAACGCA................................................................................................	20	20	0.05	1	0	0	0	0	0	1

droBip1

AA---------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--A-------------------------------------CCTTAAAAGGTATGATAAT------------------------------------TATTATAATTTTGGTCAAAA-------GTGTGCAACGCAGTGAAGGAGACATCT--CCGACCCTATAAAGTATATATATTCTTGATCAG--AAT---CACCTCCTGAGTTGATA-TGAGCATGTCC--------G	Size	Hit Count	Total Norm	Total
No Reads

dp5

TT---------AAGCGAAGGCTGAACCC-----------------------------------------------------------------------------------ATC-------------------------------------------------------------------GGCTGAGT----GAA-AATTGTACCC-CAACTGCCGT--CCAACAGAAAATTAAA-GT------------TC---GT---------------------TTTTATACCCGATACTCA----------------------------------AA-------ATGAGTAACGTCCAGAAGGAATCGTTT--CCGACCCCATAAAGTATATATATTCTTGATCAG--CAT---CAATAGCCGAGTCGATT-GAGCCATGTCTGTCTGTCCG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................TGATCAG--CAT---CAATAGCCGAGTC.........................	23	20	5.25	105	0	105	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TCGTTT--CCGACCCCATAAAGTA...............................................................	22	20	0.55	11	0	11	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAG--CAT---CAATAGCC..............................	20	20	0.50	10	0	10	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-GAGCCATGTCTGTCTGTC..	21	20	0.40	8	0	0	0	0	0	8	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAG--C...........................................	21	20	0.35	7	0	7	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................GATCAG--CAT---CAATAGCCGAGTCG........................	23	20	0.35	7	0	7	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATT-GAGCCATGTC..........	20	20	0.30	6	0	6	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTT--CCGACCC........................................................................	20	20	0.30	6	0	0	6	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATT-GAGCCATGTC..........	24	20	0.30	6	0	6	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATT-GAGCC...............	20	20	0.30	6	0	0	0	0	0	0	6	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GATT-GAGCCATGTCTGTCTG....	20	20	0.20	4	0	0	0	0	0	0	4	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TCAG--CAT---CAATAGCCGAGTCG........................	21	20	0.20	4	0	0	0	0	0	4	0	0	0	0
..............................................................................................................................................................................................................................................T------------TC---GT---------------------TTTTATACCCGATT...........................................................................................................................................................	19	5	0.20	1	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTT--CCGACC.........................................................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AGAAGGAATCGTTT--CCGACC.........................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTT--CCGACCCC.......................................................................	25	20	0.15	3	0	0	0	1	0	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAG--CAT---CAAT..................................	20	20	0.10	2	0	0	0	0	0	0	0	2	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAG--CAT---CAATAGCCGA............................	27	20	0.10	2	0	0	2	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GTTT--CCGACCCCATAAAGTAT..............................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ATCGTTT--CCGACCCCATAAAGTT...............................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAG--CAT---CAATAGCCGA............................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................TATACCCGATACTCA----------------------------------AA-------ATGA........................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCATGTCTGTCTGTC..	18	20	0.05	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................C---GT---------------------TTTTATACCCGATACTCA----------------------------------AA-------ATGA........................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAG--CAT---CAATAG................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................AGGAATCGTTT--CCGACCCCATAA...................................................................	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................ATCGTTT--CCGACCCCATAAAGTA...............................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................AG--CAT---CAATAGCCGAGTCGATT-GAGC................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ATCAG--CAT---CAATAGCCGAGTC.........................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAG--CAT---C.....................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAATCGTTT--C..............................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATT-GAGCCATGTC..........	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AT---CAATAGCCGAGTCGATT-GAGCCATG............	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAG--CAT---CAATAGCCGAGTCGATT-G...................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATT-GAGCCATGTCT.........	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-GAGCCATGTCTGTCTGT...	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0

droPer2

GT---------TAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCCAC-ACTTGCAATTTTGATTTCACT--C---------ATTAAA-GTAC-------------------------------ATATCGTAATTATACCCGATACTCAAAATG-AGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTT--CCGACCCCATAAAGTATATATATTCTTGATCAG--CAT---CAATAGCCGAGTCGATT-GAGCCATGTCTGTCTGTCCG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATT-GAGCCATGTCTG........	21	20	1.30	26	0	0	0	0	0	26
..................................................................................................................................................................................................................................................................................................................ATTGGGGTATATTAGATTTGTGGT......................................................................................................................	24	20	0.15	3	0	3	0	0	0	0

droWil2

TT---------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATA--TA------------------TTTTGATTAA------------------------CAAAAA-CCCTATAACGACTCTATAAAGTGTATATATTCTTGATCAG--CAC---GAAAAGCTGAGTCGATA-TAGCCATGTCGGCCT----G	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAGTCGATA-TAGCCATGTCGG........	25	4	0.25	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTCGATA-TAGCCATGTCGT........	23	12	0.08	1	0	0	0	1	0

droVir3

AA---------AGGC---------------------------------------------------------------------AAGATAATCTAAA---TAC--AGGTTAAC---------------------------------------------------------------------------CA----------------------------------------ATCAGA-GTCCG--------------AT---------------------TTTTACACCC-----TCGCA--G-------AGAGTATTATAATTTTGTCGTGAA-------ATGTGTAACGCATGGAAGGAGACATCT--CCCACCCCATAAAGTATATATATTCTTGATCAG--CAT---CAACAGCCGAGTCGATA-TAGCCATATTCGTCT----T	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................................................................................................................................................AA-------ATGTGTAACGCATGGAAGGAG.......................................................................................	23	7	4.57	32	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	1	1	0	0	2	9	5	2	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAG--CAT---CAACAGCC..............................	26	20	2.55	51	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AA-------ATGTGTAACGCATGGAAGGAGACA....................................................................................	26	6	2.17	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AA-------ATGTGTAACGCATGGAAGGAGAC.....................................................................................	25	6	2.00	12	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	3	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AA-------ATGTGTAACGCATGGAAGG.........................................................................................	21	8	1.88	15	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	4	2	2	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AA-------ATGTGTAACGCATGGAAGGAGACATC..................................................................................	28	5	1.80	9	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................AA-------ATGTGTAACGCATGGAAGGAGA......................................................................................	24	7	1.57	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	3	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AA-------ATGTGTAACGCATGGAAGGAGACAT...................................................................................	27	5	1.20	6	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AA-------ATGTGTAACGCATGGAAGGA........................................................................................	22	8	1.00	8	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TCGTGAA-------ATGTGTAACGCATGGAAGG.........................................................................................	26	3	0.67	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAG--CAT---CAACAGCCGAG...........................	25	20	0.55	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATA-TAGCCATATTCGTCT----.	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TCGCA--G-------AGAGTATTATAATTTTGTCG.......................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................TAC--AGGTTAAC---------------------------------------------------------------------------CA----------------------------------------ATCAGA-GTCCG--------------AT---------------------.........................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGAGTCGATA-TAGCCATATTC.........	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................GTAACGCATGGAAGGAGACATCT--CCCA...........................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................TTACACCC-----TCGCA--G-------AGAGTATTATAA...............................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................CACCC-----TCGCA--G-------AGAGTATTATAATTT............................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................TAC--AGGTTAAC---------------------------------------------------------------------------CA----------------------------------------ATCAGA-GTCCG--------------AT---------------------TT.......................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................TAC--AGGTTAAC---------------------------------------------------------------------------CA----------------------------------------ATCAGA-GTCCG--------------AT---------------------T........................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAG--CAT---CAACAGCCGAG...........................	24	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TCGTGAA-------ATGTGTAACGCATGGAAG..........................................................................................	25	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAG--CAT---CAACAG................................	24	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAG--CAT---CAACAG................................	23	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................A-------ATGTGTAACGCATGGAAGGAG.......................................................................................	22	8	0.25	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAG--CAT---CAACAGC...............................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TTGTCGTGAA-------ATGTGTAACGCATGGAA...........................................................................................	27	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TTGTCGTGAA-------ATGTGTAACGCATGGA............................................................................................	26	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TTATAATTTTGTCGTGAA-------ATGTGT......................................................................................................	24	20	0.20	4	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TCAG--CAT---CAACAGCCGAGTCG........................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GAA-------ATGTGTAACGCATGGAAGGAGAC.....................................................................................	26	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TTGTCGTGAA-------ATGTGTAACGCATGG.............................................................................................	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TGTAACGCATGGAAGGAGACATCT--C..............................................................................	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAG--CAT---CAACAGCC..............................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AA-------ATGTGTAACGCATGGAAG..........................................................................................	20	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................TGTCGTGAA-------ATGTGTAACGCATG..............................................................................................	23	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GAA-------ATGTGTAACGCATGGAAGGA........................................................................................	23	6	0.17	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................A-------ATGTGTAACGCATGGAAGGAGAC.....................................................................................	24	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GAA-------ATGTGTAACGCATGGAAGG.........................................................................................	22	6	0.17	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................A-------ATGTGTAACGCATGGAAGG.........................................................................................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAG--CAT---CAA...................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAG--CAT---CAAC..................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAG--CAT---CAACAGC...............................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCCGAGTCGATA-TAGCCATA............	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AA-------ATGTGTAACGCATGGAAGGAT.......................................................................................	23	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AA-------ATGTGTAACGCATGGAAGGATC......................................................................................	24	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAG--CAT---CAACAGCCGAGTCGAT......................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AA-------ATGTGTAACGCATGGAAGGAGACT....................................................................................	26	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................GATCAG--CAT---CAACAGCCGAGTCGATA-....................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAG--CAT---CAACAGCCGAGT..........................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAG--CAT---CAACAGCCGA............................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAG--CAT---CAACAGCCGAGTCGATA-....................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................ATAAAGTATATATATTCTTGATCAG--CA..........................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TGATCAG--CAT---CAACAGCCGAGTCGAT......................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAG--CAT---CAACAGCCGAGTC.........................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAG--CAT---CAACAGCCGAGTC.........................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CT---------GTTTTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACTCTTC--TT------------------CGTCTCTT--------------------------------TAGCTG--TATACCCAATAAATTATATATATTCTTGGTCAG--GAC---TACGAGCCGAGTTGATC-TAGTCATGTCC--------G	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATGT-------------------------AACCCCATAAAGTATATACATTCTCGATCAG--GGT---CAACAGCCGAGTCGATA-TAGCCATATCCGTCC----G	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_18657

2r:2938264-2938413 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads