ID:

dsi_18651

 Coordinate:

2l:13618035-13618302 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-84.7 -84.7 -84.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

TTGCCTTTTTGCACAGCGGCTGAGCGATTGAGCGATTGAACGATTGAACGGTTGGACGGCTGAGCGCTGGAGCGGTTGAGAGTGTGCCATCGGAGCCGGAGAGTCCTAACGCGTTGCCCGTGGTCTGTGTCCGCATCCGTATCCGTATCTCCGTGCGTCTCTCTCCGGGTGTGTGCGTGTGCGTGTGGCTAAGTGTGTGCCTGTTGTCTGTCGCGCGCGCGTCTGTCTGTGTGAGTGTGTGACTCTGTGCGTGCCCTTGCCAGTGTGTGTGTGTGTGTGGAATTGTGTGTGCACAACAATACCATATATCTTATATACTAATACCAGTGTGCCCACACTCGCACACGGCCTGCAAATAAAACATTAGA
**************************************************.((((..(((...((((.(((((((..((((((((((...((((..((((..((....(((((..(((...))).)))))..)).))))..)))).......))))).))))).))).(((((((((...(((...(((.........)))...)))....))))))))).....((.....))........))))))))..)))....)))).(((((((.((((((((.(((((((....)).))))).))))))))..)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553488
RT_0-2 hours eggs
 M053
female body
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M024
male body
..........................ATTGAGCGATTGAACGAT.................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CGTCGCGCGCGCGTCCG............................................................................................................................................... 17 2 2 1.00 2 0 1 0 0 1 0 0 0 0 0
.....TTTTTGCACAGCGGCTGAGC....................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........GCACAGCGGCTGAGCGATTGAG................................................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................GGTGTGTGCGTGTGCGTGT...................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CACGTCTGTCTGTGGGAGT.................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TGTGTGGAATTGTATATGCTCA......................................................................... 22 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................GGGGCTAAGTGTGTGACT...................................................................................................................................................................... 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGTTGCGCGCGCCTCTGTCGGT.......................................................................................................................................... 22 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................TGTCTGTGTGAGGGT.................................................................................................................................. 15 1 20 0.15 3 0 0 0 0 0 0 3 0 0 0
.................................................................................................................................................................................................................GTCGAGGGCACGTCTGTCTG........................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................CCGGAGTGGCCTAGCGCG............................................................................................................................................................................................................................................................... 18 3 20 0.10 2 0 0 0 0 0 0 0 0 2 0
.....................................................................................................................................................................................................................................................TCTGCGTGCACTTGCCAGTC....................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................GTGCGTATCTCGCCGGG....................................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................TGTCAGTCGCGCGATCGTC................................................................................................................................................. 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................TCGTCGCGCGCGCGTCCG............................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..GCCTTTTTCCACCGCGG............................................................................................................................................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................CTGCCGCGCGCGGGTCGG............................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................TGCCTGTTGCCTGTCGA.......................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

AACGGAAAAACGTGTCGCCGACTCGCTAACTCGCTAACTTGCTAACTTGCCAACCTGCCGACTCGCGACCTCGCCAACTCTCACACGGTAGCCTCGGCCTCTCAGGATTGCGCAACGGGCACCAGACACAGGCGTAGGCATAGGCATAGAGGCACGCAGAGAGAGGCCCACACACGCACACGCACACCGATTCACACACGGACAACAGACAGCGCGCGCGCAGACAGACACACTCACACACTGAGACACGCACGGGAACGGTCACACACACACACACACCTTAACACACACGTGTTGTTATGGTATATAGAATATATGATTATGGTCACACGGGTGTGAGCGTGTGCCGGACGTTTATTTTGTAATCT
**************************************************.((((..(((...((((.(((((((..((((((((((...((((..((((..((....(((((..(((...))).)))))..)).))))..)))).......))))).))))).))).(((((((((...(((...(((.........)))...)))....))))))))).....((.....))........))))))))..)))....)))).(((((((.((((((((.(((((((....)).))))).))))))))..)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
.......................................TGCTAACTTGCCAATCTGAT..................................................................................................................................................................................................................................................................................................................... 20 3 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................CACCAGAGACAGGCGT......................................................................................................................................................................................................................................... 16 1 3 0.33 1 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................AGCGTGTGCCGGGCG............... 15 1 5 0.20 1 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................................GAGCGCGTTCCGGACTTTTA........... 20 3 6 0.17 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................ATGATTACGGTCACA...................................... 15 1 10 0.10 1 0 0 0 0 1 0
....................................................................................................................................................................................................................................................................GTCACACACACACACACA.......................................................................................... 18 0 20 0.10 2 0 0 0 2 0 0
........................................................................................................................................................................................................................CGCGCAGAAAGTCACAGTCA.................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 1
..............................................................................................................................................................................................................................................................GGAAACGTCACACACACACGCAC........................................................................................... 23 3 18 0.06 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:13617985-13618352 + dsi_18651 TTGCCTTTT-------TGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGCT------------------GAGCGCTGGAGCGGTTGAGAGTG-TG-CCATC-----GGAGCCGGAGAGT---------------CCTAACGCGTTGCCCGTGGTC------------------------TG------TGTCCGCATCCGTAT----------------------------------------C----------CGTATCTCC--GTG-----------------CGTCTCTCTCCGGGTGTGTG--CGT---------------------------------------------------GT--------GCGTGTG----G------C------------TA------------------AGTG----T------GTGCCTGTTGTCTGTC-G-------------CGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCC---TTGCCAGTGTGTGTGTGT------GTGT-GGAATTGT-GTGTGCAC-------AACAATACCAT------------------ATATCT-------------------------------------------------TATATA-------CTAATACCAGTGT--GCCCACACTCGCACACGGCC----------TGCAAA---TAAAACATTAGA
droSec2 scaffold_3:298547-298923 + TTGCCTTTT-------TGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGCT------------------GAGCGCTGGAGCGGTTGAGAGTG-TG-CCATC-----GGAGCCGGAGAGT---------------CCTAACGCGTTGCCCGTGGTC------------------------TG------TGTCCGCATCCGTAT----------------------------------------C----------CGTATCTCC--GTG-----------------CGTCTCTCTCCGGGTGTGTG--CGT---------------------------------------------------GT--------GCGTGTG----G------T------------TA------------------AGTG----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCC---CTGCCAGTGTGTGTGTGT------GTGT-GGAATTGT-GTGTGCAC-------AACAATACCAT------------------ATATCT-------------------------------------------------TATATA-------CTAATACCAGTGT--GCCCACACTCGCACACGGCC----------TGCAAA---TAAAATATTAGA
dm3 chr2L:14040227-14040609 + TTGCCTTTT-------TGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGCT------------------GAGCGCTGGAGCGGTTGAGAGTG-TG-CCATC-----GGAGCCGGAGAGT---------------CCTAACGCGTTGCCCGTGGCC------------------------TG------TGTCCGCATCCGTAT----------------------------------------C----------CGTATCTCC--GTG-----------------CGTCTCTCTCCGGGTGTGTG--CGT---------------------------------------------------GT--------GCGTGTG----G------T------------TA------------------AGTG----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTGGACTCT------------GTGCGTGCCCCC-CTGCCAGTGTGTGTGTGTG----TGTGTGGGTTTTGT-GTGTGCAC-------AACAATACCAT------------------ATATCT-------------------------------------------------TATATA-------CTAATACCAGTGT--GCCCACACTCGCACACGGCC----------TGCAAA---TAAAATATTAGA
droEre2 scaffold_4929:11429538-11429918 - TTGCCTTTT-------TGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGCT------------------GAGCGCTGGAGCGGTTGAGAGTG-TG-CCATC-----GGAGCCGGAGAGT---------------CCTAACGCGCTGCCCGTGGTC------------------------TG------TGTCCGCATCCGTAT----------------------------------------C----------CGTATCTCC--GTG-----------------CGTCTCTCTCCGGGTGTGTG--CGTGTGCG---------------------------------------------TGTG--------CGTGTG----G------T------------TA------------------AGTG----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCC---CTGCCAGTGTGTGTGTGCG----TGTGTG-----TGT-GTGTGCAC-------AACAATACTAT------------------ATATCT-------------------------------------------------TATATA-------CTTATACCAGTGT--ACCCACAATCGCACACGGCC----------TGCAAA---TAAAATATTAGA
droYak3 2L:14133316-14133707 + TTGCCTTTT-------TGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGCT------------------GAGCGCTGGAGCGGTTGAGAGTG-TG-CCATC-----GGAGCCGGAGAGT---------------CCTAACGCGCTGCCCGTGGTC------------------------TG------TGTCCGCATCCGTAT----------------------------------------CCGTATCT---CGTATCTCC--GTG-----------------CGTCTCTCTCCGGGTGTGTG--CGTGTGGT---------------------------------------------TGTG--------CGTGTG----T------T------------TA------------------AGTG----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTTTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCC---CTGCCAGTGTGTGTGTGTGTGCGTG--TG-----TGT-GTGTGCAC-------AACAATACTAT------------------ATATCT-------------------------------------------------TATATA-------CTAATACCAGTGTGTGCCCACACTCGCACACGGCC----------TGCAAA---TAAAATATTAGA
droEug1 scf7180000409452:604266-604657 + TTGCCTTTTGCCTCCATGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGTT------------------GAGCGGTGGAGCGGTTGAGAGTGGCA-CCATC-----GGAGCCGGAGAGC---------------CCTGTCGCGTTGCCCGTGGTC------------------------TG------TGTCCGCATCCGTAT----------------------------------------C----------CGTAACTCC--GTG-----------------CGTCCCTCTCCGGGTGTGTGTGCGTCTTCG---------------------------------------------TGT--------GCGTGTG----C------C------------TA------------------TGTGT--GT----T-ATGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCC---CTGCCACTGTGTTTGTGT------A--TG-----TGT-GTGTGCAC-------AACAATACTAT------------------ATATCT-------------------------------------------------TATATA-------CTAATACAAGTGTG-GCCCACACTCACACACGGCC----------TGCAAA--ATAAAATAGTAAA
droBia1 scf7180000302422:7769541-7769937 + TTGCCTTTTGCCTCCATGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGTT--------GGACGG--TTGAGCGGTGGAGCGGTTGAGAGTG-TG-CCATCGTTGCGGAGCCGGAGAGT---------------CCTGTCGCGTTGCCCGTGGTC------------------------TG------TGTCCGCATCCGTAT----------------------------------------C----------CGTTTCTCC--GTG-----------------CGTCTCTCTCCGGGTGTGTG--CGTGTGCC---------------------------------------------TGTGCGTGT--GCGTGTGCC--C------C------------TG------------T------GTG----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCC---CTGCCAGTGT------------------G-----TGT-GTGTGCAC-------AACAATACTAT------------------ATATCT------------------------------------------------CTATATA-------CTAATACCAGTGTG-GACCACACTCACACACGGCC----------TGCAAA---CAAAGTATTAGA
droTak1 scf7180000415399:1266335-1266714 - TTGCCTTTTGCCTCCATGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGTTGAGCGGTTGAGCGG--TTGAGCGGTGGAGCGGTTGAGA------------------------GAGAGT---------------CCTGTCGCGTTACCCGTGGTC------------------------TG------TGTCCGCATCCGTGT----------------------------------------C----------CGTATCTCC--GTG-----------------CGTCTCTCTCCGGGTGTGTG--CGTGTCCCTGTG--------------C--------------------GTGA-GTGT--------GCGTGTG----C------C------------TA------------------TGTGT--GTGTGCCTG-GCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCT--------------------------------------CT-GTGTGCAC-------AACAATACTAT------------------ATATCT------------------------------------------------CTATATA-------CTAATACAAGTGTG-GCCCACACTCACACACGGCC----------TGCAAA---TAAAATATTAGA
droEle1 scf7180000491338:1670068-1670429 + TTGCCTTTTGCCTCCATGCACA------GCGGCTGAGC-----GATTGAACGATTGAACGGTT----------------GGACGGTT--------G----G--TTGAGCGGTGGAGCCGTTGAGAGTG-TG-CTAAC-----GGAGCTGGAGAGC---------------TTAGCCGCGCTGCCCGTGGTC------------------------TG------TGTCTGCGTCTGTGT----------------------------------------CCGTGTCCGTGCGTATCTCC--GTG-----------CGTGTGCGTCTCTCTCCGAGTGTGTGTGCGTGTGCC---------------------------------------------TGTG--------CG------------------------------------------T------GTG----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC------------------------------------TG--------------------------------------------------------T------------G--TG-----TGT-GTGTGCAC-------AACAATACTAT------------------ACATAT------------------------ATATATATATATCTATATATATATATATATA-------CCAATACAAGTGT--GACCGCACTCACACACGGCA----------AGCAGA---TAATTTATTT--
droRho1 scf7180000762282:51506-51907 - TTGCCTTCTGCCTCCATGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGAGCGGTTGAACGGTTGGACGGTT--------GGACGGTGTTGAGCGGTGGAGCCGTTGAGAGTG-TG-CCATC-----GAAGCCGGAGAGT---------------CCTGTCGCGCTGCCCGTGGTC---------TGAG---------CCTG------TGTCCGCATCCGTGT----------------------------------------CCGTGTCCGTGCGTATCTCC--GTG-----------CGTGTGCGTCTCTCTCCGGGTGTGTGTGCGTGTGCC---------------------------------------------TGTG--------CG------------------------------------------T------GTG----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------G----------------------------------------------TGT-GTGTGCAC-------AACAATCATAC----ACACAC--------AT------------------------------------------ATATATATATATATATA-------CTAATACAAGTGTG-GACCGCACTCACACACGGCC----------AGCAAA---TAAAATATTTAA
droFic1 scf7180000454082:3718-4159 - TTGCCTTTTGCCTCCATGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGTTGAGCGGTTGGACGG--TTGAGCCGTTGAGCGGTTGAGAGTT-TG-CCACC-----GGAGCCGGAGAGT---------------CCTGTCGCGTTACCCGTGGTC------------------------TG------TGTCCGCATCCGTAT----------------------------------------C----------CGTATCTCCGTGTG-----------------CGTCTCTCTTCGGGTGTGTGAGTGTGTGCCTGTGGCTGT------------------GCGTTT--GCTT----GTTGTG--------CGTGTG----C------G------TTTGCGTTT------------------GCGTTGGT------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGCTCG-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCCCAGCTGCCACTGCGT------------G--TG-----TGT-GTGTGCAC-------AACAATACTAT------------------ATCCAT------------------------------------------------ATATATACTAAT-ACCAATACAAGTGTG-GCCCGCACTCACACACGACC----------TGCAAA---TAAAATATTTGA
droKik1 scf7180000301334:62292-62703 - CTGCCTTTTGCCTCCAAGCAC---------GGCCGAGA-----GATTGAGCGACTGAAC---------------------------T------------------GAGCGATTGAACGATTGAGAGTG-TG-CCAGC-----AGAGCCGGAGAGTCGCGTCGCGTTGCGTTGCGTTGCGTTGCCCGTGGTC------------------------TG------CGTCCGCATCCGCAT-CCTCCGAATCCTTGCCCGCCTTCGCCTCCGCCTCCGCCTCCGTGTCCGTG------------TG-----------------------------------------------------------------CTCCTCTC-CTCTCCTCGCCCATCC-G------TTT--CGCCCCG------------------------TTTGTG--------T------GCG----T------GTGTCTGTCGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TA--TAGCTGT--GTGAGTGTGCG-AGTTA------------GTGCGTGGCC---ATG--------T------------C--TG-----TGT-GTGTGCAC-------AACAATTCTAT------------------ATATAT----------------------------------------GTATACGTGTATATA-------CTAATACTAGCGT--GCCCACACTCACACAAG-CA-A--AAAGACTGCAAA---TAAAAAAT----
droAna3 scaffold_12916:11739808-11740203 - TTGCCTTCTGCCTCCATGCACA------GCAGCTGAGG-----GATTGAGCGGTTGAACGGTT--------------------------------------------------GAGCGGTTGAGAGTG-TGTCCATC-----AGAGTCGG-GAGT---------------CGCGGCGCGTTGCCCGTGGTCGCATTCGCATAAGCATTCGCATCCCG------TATCCGTATCCGTCT----------------------------------------CCGTATCCGTG------------TGTCCT--------------------------GTGAGTG--CGTGTACTT------------------------------------------GCCC----C--CAGTGTGTG----T--------------------GTGTG--------T------TTG----T------GTGCCTGTTGTCTGTCTGT----TGGCGGTGCGCGCGC--G-------------------------TC--TATCTGTGTGTGAGTGTGTG-ACTCT------G-----GTGCGTGCCC----TG-------------------------G-----TGT-GTGTGCAC-------AACAACACTATCTATACATACATATTTATATACAT------------------------------------------------ATCTATGTGTATA-ATAAAAGAA------------AAACACACACAGGCAACAAAAAACAGCAAATAATAAAATAACAGA
droBip1 scf7180000396572:1405821-1406220 - TTGCCTTCTGCCTCCATGCACA------GCAGCTGAGG-----GATTGAGCGGTTGAACGGTT--------------------------------------------------GAGCGGTTGAGAGTG-TGCCCATC-----AGAGTCGG-GAGT---------------CGCGGCGCGTTGCCCGTGGTCGCATTCGCATAAGCATTCGCATCCCG------TATCCGTATCCGTCT----------------------------------------CCGCATCCGTG------------TGTCCT--------------------------GTGAGTG--CGTGTACATGTGCCTGTG----------------T---------------------------GCCCCTGCG----AGTG--TG------------TG------------T------GTG----T------GTGCCTGTTGTCTGTCTGC----TGGCGGTGCGCGCGC--G-------------------------TCTGTGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGGCC----TG---G----T------------G--TG-----TGT-GTGTGCAC-------AACAACACTATCTATACATACATATCTA------C-------------------------------------------------TATATATGTATAACCAAAAAAAG------------CACACACACAGACTAAAAAAAATATTAAAAAATAAAATAACAAA
dp5 4_group4:5625646-5625957 - TTGCCTTTT-TCTCCGTGCACA------GCCACCGAGA-----GATTGAG-------------------------------------------------------------------------------TT-CCATC-----AG---CGTAGTGT---------------CGCGTCGCGTTGGTTGTGGTC------------------------TG------TGTCCGTGTCAGTGT----------------------------------------C----------CGTATCTGT--GTGTGCTGCTCGAGCGTGTG----------CGTGAGTG----CG--------------TG----------------C---------------------------GAGCGTGTG----TGTG--TG------------TG----TGTGCCTCTGCCTGTGCC----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TG--TATCGGC--GAGAGTGTGTG-----C------------GT-----------------------------------GC--G-----TGTACTGTGCAC-------TAAAATGCCAT------------------GTACA--------------------------------------------------TAGATA-------CTAATACATGCCT---ACCACACACATACA-GACA----------TGGGAA---TAAA---TTAGA
droPer2 scaffold_16:1324142-1324447 + TTGCCTTTT-TCTCCGTGCACA------GCCACCGAGA-----GATTGAG-------------------------------------------------------------------------------TT-CCATC-----AG---CGTAGTGT---------------CGCGTCGCGTTGGTTGTGGTC------------------------TG------TGTCCGTGTCAGTGT----------------------------------------C----------CGTATCTGT--GTGTGCTGCTCGAGCGTGTG----------CGTGAGTG----CG--------------TG----------------C---------------------------GAGCGTGTG----TGTG--TG------------TG----TGTGCCTC------TGCC----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TG--TATCGGC--GAGAGTGTGTG-----C------------GT-----------------------------------GC--G-----TGTACTGTGCAC-------TAAAATGCCAT------------------GTACA--------------------------------------------------TAGATA-------CTAATACATGCCT---ACCACACACATACA-GACA----------TGGGAA---TAAA---TTAGA
droWil2 scf2_1100000004511:11008677-11008898 - dwi_741 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCGGGGTA------------------------AG------TGTTCTTTTCTGTGT----------------------------------------A----------TGTGT---G--GTG-----------------CGTCTGTGTGTGTGTGTGTG--TGTGTATG---------------------------------------------TGTG--TGT--GTGTGTATGTGTGTGTGTGTGTATGTGTGTGTGTGTG--------T------TTG----T------GTGC----------------------------G-------------------------------------------T--GTGTGTGTGTG-TTTGT------------GTGCGTGTGT---GTGTGTGTGTGTGTGTGT------GTGT-GGAGCTG---TATGTATAAACCAAAACAAATTTAT------------------ATATAT------------------------------------------------ATATATA-------TATATATTA---------------------------------------------------------
droVir3 scaffold_12723:1119839-1120142 + TTGCCTTTTC-----CTGCACAGCCAA---AGCAGAGCTAAGCG-----------------------------------------------------------------------------------------------------------GAGA---------------CGCGTCGCG---GTCGTG-CC------------------------TG------TGTCTTTGTCTGTGT----------------------------------------T----------TGTGACTTGGACTG-----------------TGACTGTGTATGGAAGCGCGTGC-----------------------------------------------------GT--------GCGTGTG----T------G------------TA------------T------GTG----T------GTGTTTGTTGTCTGTC-GTCGCTTAGCACTGCGCGCGC--GTTTTGTCAGTGTATGTGTG------CT--TGTTTGT--ATGTGTGTGCG-CGTGTGCCCGTGATTCTCTGTGCTTCT---CTGTGCATATGTGTGTGT----------G-----TGC-GTGTGCGT-------GTTAAAAC----------------------------------AGTGTGACCATATAT----------------AT--------ATATATATA-----CATATA------------------------------------------------------------
droMoj3 scaffold_6500:10254103-10254446 - TTGCCTTTTCCC----TGCACAGCCAAAGCAGCAGAGCCAAGCG-----------------------------------------------------------------------------------------------------------AAGT---------------CGCGTCGCG---GTCGTG-CC------------------------TG------TGTCTGCGTT----T----------------------------------------TTGTGAC----TGTGACTTT---------------------------------GCGTGCGTG--TGTGTGCTT----------------------------------GCTTATTT-G------TAT--GTGTGTG----T--G--CG------------TG------------T------GTG----TGTGTCAG-TTTTGTTGTCTGTC-GTCGCTTAACACTGCGCGCGC--GATTTGTCAGTGTATGTGTGCGAGCGTGCGTATGTGT--GT----------------------------------------GTGTGAGTGAGTCTGTGTG----CG--TG-----TGC-GTGTGCTC-------GTGA-TAGC--------------------------TCGAAACAGTGTGACCATACATCTTTATATGTATATAATTATATATATACATACA-------CTAATACAT------AAGCACACGCGTACATGGC--------------------------------
droGri2 scaffold_15252:4547485-4547767 + TTGCCTTTTCC-----TGCACAGCCA----AGCAGAGCCAAGCG-----------------------------------------------------------------------------------------------------------GAGT----------CGCG-A---GCGT---GGTCGTG-CC------------------------TGTGTCTGTGTCTGTGTCTGCGACTGTCTGTGAC------------------------------TGTGAC----TGTG--------------ACTTGTGTATGTG----------CGTGCGTG----CG--------------TGCTTGTGTGTGTGGTGT-GTGTCTGTGTCTT---GGTC----TGT--GTCTCTG------------------------TGTGTG--------T------GTG----T------GTGCTTGTTGTCTGTC-GTCGCTTAACACTGCGCGCGC--GTTTTGTCATC--------------------GTGTGA--GTGGATGTATT-TGTCT------------GTGTGTGCGT---CTGTGTGTGTGTGTGCGT------GTGT--------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTGCCTTTT-------TGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGCT------------------GAGCGCTGGAGCGGTTGAGAGTG-TG-CCATC-----GGAGCCGGAGAGT---------------CCTAACGCGTTGCCCGTGGTC------------------------TG------TGTCCGCATCCGTAT----------------------------------------C----------CGTATCTCC--GTG-----------------CGTCTCTCTCCGGGTGTGTG--CGT---------------------------------------------------GT--------GCGTGTG----G------C------------TA------------------AGTG----T------GTGCCTGTTGTCTGTC-G-------------CGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCC---TTGCCAGTGTGTGTGTGT------GTGT-GGAATTGT-GTGTGCAC-------AACAATACCAT------------------ATATCT-------------------------------------------------TATATA-------CTAATACCAGTGT--GCCCACACTCGCACACGGCC----------TGCAAA---TAAAACATTAGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................ATTGAGCGATTGAACGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.....TTTT-------TGCACA------GCGGCTGAGC-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.................GCACA------GCGGCTGAGC-----GATTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................GGTGTGTG--CGT---------------------------------------------------GT--------GCGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
droSec2
TTGCCTTTT-------TGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGCT------------------GAGCGCTGGAGCGGTTGAGAGTG-TG-CCATC-----GGAGCCGGAGAGT---------------CCTAACGCGTTGCCCGTGGTC------------------------TG------TGTCCGCATCCGTAT----------------------------------------C----------CGTATCTCC--GTG-----------------CGTCTCTCTCCGGGTGTGTG--CGT---------------------------------------------------GT--------GCGTGTG----G------T------------TA------------------AGTG----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCC---CTGCCAGTGTGTGTGTGT------GTGT-GGAATTGT-GTGTGCAC-------AACAATACCAT------------------ATATCT-------------------------------------------------TATATA-------CTAATACCAGTGT--GCCCACACTCGCACACGGCC----------TGCAAA---TAAAATATTAGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..GCCTTTT-------TGCACA------GCGGCTGAGC-----GAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
............................................................................................................CGCTGGAGCGGTTGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
............................................................ATTGA--------ACGGTTGGACGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
....................................................ATTGAACGATTGA--------ACGGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
............................................................................................................................................................................................................................................................................................................................................GGTGTGTG--CGT---------------------------------------------------GT--------GCGTGTG----G------T------------....................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
...................................................GATTGAACGATTGA--------ACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
dm3
TTGCCTTTT-------TGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGCT------------------GAGCGCTGGAGCGGTTGAGAGTG-TG-CCATC-----GGAGCCGGAGAGT---------------CCTAACGCGTTGCCCGTGGCC------------------------TG------TGTCCGCATCCGTAT----------------------------------------C----------CGTATCTCC--GTG-----------------CGTCTCTCTCCGGGTGTGTG--CGT---------------------------------------------------GT--------GCGTGTG----G------T------------TA------------------AGTG----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTGGACTCT------------GTGCGTGCCCCC-CTGCCAGTGTGTGTGTGTG----TGTGTGGGTTTTGT-GTGTGCAC-------AACAATACCAT------------------ATATCT-------------------------------------------------TATATA-------CTAATACCAGTGT--GCCCACACTCGCACACGGCC----------TGCAAA---TAAAATATTAGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--G-------------------------TC--TGTCTGT--GTGAGT............................................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000000000000000000005110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................ATTGAGCGATTGAACGATTGA--------ACGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GGTTGGACGGCT------------------GAGCGCATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TCTCCGGGTGTGTG--CGT---------------------------------------------------GT--------GC.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-CTGCCAGTGTGTGTGTG.......................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
........................................................AACGATTGA--------ACGGTTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TT-------TGCACA------GCGGCTGAGC-----GAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTG----G------T------------TA------------------AGTG----T------GTGCCT...........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CTTTT-------TGCACA------GCGGCTGAGC-----GA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................GT---------------------------------------------------GT--------GCGTGTG----G------T------------TA------------------AGG.............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.....................................................TTGAACGATTGA--------ACGGTTGGACGGCT------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................GGTGTGTG--CGT---------------------------------------------------GT--------GCGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
droEre2
TTGCCTTTT-------TGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGCT------------------GAGCGCTGGAGCGGTTGAGAGTG-TG-CCATC-----GGAGCCGGAGAGT---------------CCTAACGCGCTGCCCGTGGTC------------------------TG------TGTCCGCATCCGTAT----------------------------------------C----------CGTATCTCC--GTG-----------------CGTCTCTCTCCGGGTGTGTG--CGTGTGCG---------------------------------------------TGTG--------CGTGTG----G------T------------TA------------------AGTG----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCC---CTGCCAGTGTGTGTGTGCG----TGTGTG-----TGT-GTGTGCAC-------AACAATACTAT------------------ATATCT-------------------------------------------------TATATA-------CTTATACCAGTGT--ACCCACAATCGCACACGGCC----------TGCAAA---TAAAATATTAGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTG-ACTCT------------GTGCGTG..............................................................................................................................................................................................................................1911.0010100000
droYak3
TTGCCTTTT-------TGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGCT------------------GAGCGCTGGAGCGGTTGAGAGTG-TG-CCATC-----GGAGCCGGAGAGT---------------CCTAACGCGCTGCCCGTGGTC------------------------TG------TGTCCGCATCCGTAT----------------------------------------CCGTATCT---CGTATCTCC--GTG-----------------CGTCTCTCTCCGGGTGTGTG--CGTGTGGT---------------------------------------------TGTG--------CGTGTG----T------T------------TA------------------AGTG----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTTTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCC---CTGCCAGTGTGTGTGTGTGTGCGTG--TG-----TGT-GTGTGCAC-------AACAATACTAT------------------ATATCT-------------------------------------------------TATATA-------CTAATACCAGTGTGTGCCCACACTCGCACACGGCC----------TGCAAA---TAAAATATTAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGCGTG--T............................................................................................................................................................................................18200.05100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGCGTG--TG-----TGT-GT................................................................................................................................................................................23200.05100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGTGCGTG--T............................................................................................................................................................................................20200.05100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGCGTG--TG-----TGT-GTGT..............................................................................................................................................................................26200.05100000010000
droEug1
TTGCCTTTTGCCTCCATGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGTT------------------GAGCGGTGGAGCGGTTGAGAGTGGCA-CCATC-----GGAGCCGGAGAGC---------------CCTGTCGCGTTGCCCGTGGTC------------------------TG------TGTCCGCATCCGTAT----------------------------------------C----------CGTAACTCC--GTG-----------------CGTCCCTCTCCGGGTGTGTGTGCGTCTTCG---------------------------------------------TGT--------GCGTGTG----C------C------------TA------------------TGTGT--GT----T-ATGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCC---CTGCCACTGTGTTTGTGT------A--TG-----TGT-GTGTGCAC-------AACAATACTAT------------------ATATCT-------------------------------------------------TATATA-------CTAATACAAGTGTG-GCCCACACTCACACACGGCC----------TGCAAA--ATAAAATAGTAAASizeHit CountTotal NormTotal
No Reads
droBia1
TTGCCTTTTGCCTCCATGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGTT--------GGACGG--TTGAGCGGTGGAGCGGTTGAGAGTG-TG-CCATCGTTGCGGAGCCGGAGAGT---------------CCTGTCGCGTTGCCCGTGGTC------------------------TG------TGTCCGCATCCGTAT----------------------------------------C----------CGTTTCTCC--GTG-----------------CGTCTCTCTCCGGGTGTGTG--CGTGTGCC---------------------------------------------TGTGCGTGT--GCGTGTGCC--C------C------------TG------------T------GTG----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCC---CTGCCAGTGT------------------G-----TGT-GTGTGCAC-------AACAATACTAT------------------ATATCT------------------------------------------------CTATATA-------CTAATACCAGTGTG-GACCACACTCACACACGGCC----------TGCAAA---CAAAGTATTAGASizeHit CountTotal NormTotal
No Reads
droTak1
TTGCCTTTTGCCTCCATGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGTTGAGCGGTTGAGCGG--TTGAGCGGTGGAGCGGTTGAGA------------------------GAGAGT---------------CCTGTCGCGTTACCCGTGGTC------------------------TG------TGTCCGCATCCGTGT----------------------------------------C----------CGTATCTCC--GTG-----------------CGTCTCTCTCCGGGTGTGTG--CGTGTCCCTGTG--------------C--------------------GTGA-GTGT--------GCGTGTG----C------C------------TA------------------TGTGT--GTGTGCCTG-GCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCT--------------------------------------CT-GTGTGCAC-------AACAATACTAT------------------ATATCT------------------------------------------------CTATATA-------CTAATACAAGTGTG-GCCCACACTCACACACGGCC----------TGCAAA---TAAAATATTAGASizeHit CountTotal NormTotal
No Reads
droEle1
TTGCCTTTTGCCTCCATGCACA------GCGGCTGAGC-----GATTGAACGATTGAACGGTT----------------GGACGGTT--------G----G--TTGAGCGGTGGAGCCGTTGAGAGTG-TG-CTAAC-----GGAGCTGGAGAGC---------------TTAGCCGCGCTGCCCGTGGTC------------------------TG------TGTCTGCGTCTGTGT----------------------------------------CCGTGTCCGTGCGTATCTCC--GTG-----------CGTGTGCGTCTCTCTCCGAGTGTGTGTGCGTGTGCC---------------------------------------------TGTG--------CG------------------------------------------T------GTG----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC------------------------------------TG--------------------------------------------------------T------------G--TG-----TGT-GTGTGCAC-------AACAATACTAT------------------ACATAT------------------------ATATATATATATCTATATATATATATATATA-------CCAATACAAGTGT--GACCGCACTCACACACGGCA----------AGCAGA---TAATTTATTT--SizeHit CountTotal NormTotal
No Reads
droRho1
TTGCCTTCTGCCTCCATGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGAGCGGTTGAACGGTTGGACGGTT--------GGACGGTGTTGAGCGGTGGAGCCGTTGAGAGTG-TG-CCATC-----GAAGCCGGAGAGT---------------CCTGTCGCGCTGCCCGTGGTC---------TGAG---------CCTG------TGTCCGCATCCGTGT----------------------------------------CCGTGTCCGTGCGTATCTCC--GTG-----------CGTGTGCGTCTCTCTCCGGGTGTGTGTGCGTGTGCC---------------------------------------------TGTG--------CG------------------------------------------T------GTG----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------G----------------------------------------------TGT-GTGTGCAC-------AACAATCATAC----ACACAC--------AT------------------------------------------ATATATATATATATATA-------CTAATACAAGTGTG-GACCGCACTCACACACGGCC----------AGCAAA---TAAAATATTTAASizeHit CountTotal NormTotal
No Reads
droFic1
TTGCCTTTTGCCTCCATGCACA------GCGGCTGAGC-----GATTGAGCGATTGAACGATTGA--------ACGGTTGGACGGTTGAGCGGTTGGACGG--TTGAGCCGTTGAGCGGTTGAGAGTT-TG-CCACC-----GGAGCCGGAGAGT---------------CCTGTCGCGTTACCCGTGGTC------------------------TG------TGTCCGCATCCGTAT----------------------------------------C----------CGTATCTCCGTGTG-----------------CGTCTCTCTTCGGGTGTGTGAGTGTGTGCCTGTGGCTGT------------------GCGTTT--GCTT----GTTGTG--------CGTGTG----C------G------TTTGCGTTT------------------GCGTTGGT------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGCTCG-------------------------TC--TGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGCCCCAGCTGCCACTGCGT------------G--TG-----TGT-GTGTGCAC-------AACAATACTAT------------------ATCCAT------------------------------------------------ATATATACTAAT-ACCAATACAAGTGTG-GCCCGCACTCACACACGACC----------TGCAAA---TAAAATATTTGASizeHit CountTotal NormTotal
No Reads
droKik1
CTGCCTTTTGCCTCCAAGCAC---------GGCCGAGA-----GATTGAGCGACTGAAC---------------------------T------------------GAGCGATTGAACGATTGAGAGTG-TG-CCAGC-----AGAGCCGGAGAGTCGCGTCGCGTTGCGTTGCGTTGCGTTGCCCGTGGTC------------------------TG------CGTCCGCATCCGCAT-CCTCCGAATCCTTGCCCGCCTTCGCCTCCGCCTCCGCCTCCGTGTCCGTG------------TG-----------------------------------------------------------------CTCCTCTC-CTCTCCTCGCCCATCC-G------TTT--CGCCCCG------------------------TTTGTG--------T------GCG----T------GTGTCTGTCGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TA--TAGCTGT--GTGAGTGTGCG-AGTTA------------GTGCGTGGCC---ATG--------T------------C--TG-----TGT-GTGTGCAC-------AACAATTCTAT------------------ATATAT----------------------------------------GTATACGTGTATATA-------CTAATACTAGCGT--GCCCACACTCACACAAG-CA-A--AAAGACTGCAAA---TAAAAAAT----SizeHit CountTotal NormTotal
No Reads
droAna3
TTGCCTTCTGCCTCCATGCACA------GCAGCTGAGG-----GATTGAGCGGTTGAACGGTT--------------------------------------------------GAGCGGTTGAGAGTG-TGTCCATC-----AGAGTCGG-GAGT---------------CGCGGCGCGTTGCCCGTGGTCGCATTCGCATAAGCATTCGCATCCCG------TATCCGTATCCGTCT----------------------------------------CCGTATCCGTG------------TGTCCT--------------------------GTGAGTG--CGTGTACTT------------------------------------------GCCC----C--CAGTGTGTG----T--------------------GTGTG--------T------TTG----T------GTGCCTGTTGTCTGTCTGT----TGGCGGTGCGCGCGC--G-------------------------TC--TATCTGTGTGTGAGTGTGTG-ACTCT------G-----GTGCGTGCCC----TG-------------------------G-----TGT-GTGTGCAC-------AACAACACTATCTATACATACATATTTATATACAT------------------------------------------------ATCTATGTGTATA-ATAAAAGAA------------AAACACACACAGGCAACAAAAAACAGCAAATAATAAAATAACAGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........CTCCATGCACA------GCAGCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000002
.....................................................................................................................GGTTGAGAGTG-TGTCCATC-----AGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..................................................................................................................................................................................GTTGCCCGTGGTCGCATTCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...............................GCTGAGG-----GATTGAGCGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100
droBip1
TTGCCTTCTGCCTCCATGCACA------GCAGCTGAGG-----GATTGAGCGGTTGAACGGTT--------------------------------------------------GAGCGGTTGAGAGTG-TGCCCATC-----AGAGTCGG-GAGT---------------CGCGGCGCGTTGCCCGTGGTCGCATTCGCATAAGCATTCGCATCCCG------TATCCGTATCCGTCT----------------------------------------CCGCATCCGTG------------TGTCCT--------------------------GTGAGTG--CGTGTACATGTGCCTGTG----------------T---------------------------GCCCCTGCG----AGTG--TG------------TG------------T------GTG----T------GTGCCTGTTGTCTGTCTGC----TGGCGGTGCGCGCGC--G-------------------------TCTGTGTCTGT--GTGAGTGTGTG-ACTCT------------GTGCGTGGCC----TG---G----T------------G--TG-----TGT-GTGTGCAC-------AACAACACTATCTATACATACATATCTA------C-------------------------------------------------TATATATGTATAACCAAAAAAAG------------CACACACACAGACTAAAAAAAATATTAAAAAATAAAATAACAAASizeHit CountTotal NormTotal
No Reads
dp5
TTGCCTTTT-TCTCCGTGCACA------GCCACCGAGA-----GATTGAG-------------------------------------------------------------------------------TT-CCATC-----AG---CGTAGTGT---------------CGCGTCGCGTTGGTTGTGGTC------------------------TG------TGTCCGTGTCAGTGT----------------------------------------C----------CGTATCTGT--GTGTGCTGCTCGAGCGTGTG----------CGTGAGTG----CG--------------TG----------------C---------------------------GAGCGTGTG----TGTG--TG------------TG----TGTGCCTCTGCCTGTGCC----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TG--TATCGGC--GAGAGTGTGTG-----C------------GT-----------------------------------GC--G-----TGTACTGTGCAC-------TAAAATGCCAT------------------GTACA--------------------------------------------------TAGATA-------CTAATACATGCCT---ACCACACACATACA-GACA----------TGGGAA---TAAA---TTAGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................GAGA-----GATTGAG-------------------------------------------------------------------------------TT-CCATC-----AG---CG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTGCC----T------GTGCCTGTT........................................................................................................................................................................................................................................................................................................................................2050.2010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTGCC----T------GTGCCTG..........................................................................................................................................................................................................................................................................................................................................18200.1020200000000
droPer2
TTGCCTTTT-TCTCCGTGCACA------GCCACCGAGA-----GATTGAG-------------------------------------------------------------------------------TT-CCATC-----AG---CGTAGTGT---------------CGCGTCGCGTTGGTTGTGGTC------------------------TG------TGTCCGTGTCAGTGT----------------------------------------C----------CGTATCTGT--GTGTGCTGCTCGAGCGTGTG----------CGTGAGTG----CG--------------TG----------------C---------------------------GAGCGTGTG----TGTG--TG------------TG----TGTGCCTC------TGCC----T------GTGCCTGTTGTCTGTC-GC----TAACGGTGCGCGCGC--G-------------------------TG--TATCGGC--GAGAGTGTGTG-----C------------GT-----------------------------------GC--G-----TGTACTGTGCAC-------TAAAATGCCAT------------------GTACA--------------------------------------------------TAGATA-------CTAATACATGCCT---ACCACACACATACA-GACA----------TGGGAA---TAAA---TTAGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................GTGTG----TGTG--TG------------TG----TGTGCC........................................................................................................................................................................................................................................................................................................................................................................19200.051000001
droWil2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCGGGGTA------------------------AG------TGTTCTTTTCTGTGT----------------------------------------A----------TGTGT---G--GTG-----------------CGTCTGTGTGTGTGTGTGTG--TGTGTATG---------------------------------------------TGTG--TGT--GTGTGTATGTGTGTGTGTGTGTATGTGTGTGTGTGTG--------T------TTG----T------GTGC----------------------------G-------------------------------------------T--GTGTGTGTGTG-TTTGT------------GTGCGTGTGT---GTGTGTGTGTGTGTGTGT------GTGT-GGAGCTG---TATGTATAAACCAAAACAAATTTAT------------------ATATAT------------------------------------------------ATATATA-------TATATATTA---------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................TG-----------------CGTCTGTGTGTGTGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.25500050
........................................................................................................................................................................................................................................................................................................................................................TGTATG---------------------------------------------TGTG--TGT--GTGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................19200.10200002
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGTGTGTGTG-TTTGT------------GTGCGTGTG............................................................................................................................................................................................................................26100.10100001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTG--------T------TTG----T------GTGC----------------------------G-------------------------------------------T--GTG...............................................................................................................................................................................................................................................................26100.10100001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTG-TTTGT------------GTGCGTGT.............................................................................................................................................................................................................................21200.10200002
......................................................................................................................................................................................................................................................................................................................................................TGTGTATG---------------------------------------------TGTG--TGT--GTGTGTA............................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
droVir3
TTGCCTTTTC-----CTGCACAGCCAA---AGCAGAGCTAAGCG-----------------------------------------------------------------------------------------------------------GAGA---------------CGCGTCGCG---GTCGTG-CC------------------------TG------TGTCTTTGTCTGTGT----------------------------------------T----------TGTGACTTGGACTG-----------------TGACTGTGTATGGAAGCGCGTGC-----------------------------------------------------GT--------GCGTGTG----T------G------------TA------------T------GTG----T------GTGTTTGTTGTCTGTC-GTCGCTTAGCACTGCGCGCGC--GTTTTGTCAGTGTATGTGTG------CT--TGTTTGT--ATGTGTGTGCG-CGTGTGCCCGTGATTCTCTGTGCTTCT---CTGTGCATATGTGTGTGT----------G-----TGC-GTGTGCGT-------GTTAAAAC----------------------------------AGTGTGACCATATAT----------------AT--------ATATATATA-----CATATA------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................CTG-----------------TGACTGTGTATGGAAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
...............................GCAGAGCTAAGCG-----------------------------------------------------------------------------------------------------------GAGA---------------CG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000100
..........................A---AGCAGAGCTAAGCG-----------------------------------------------------------------------------------------------------------GAGA---------------CG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
.................................................................................................................................................................................................................................................................................................TGTGACTTGGACTG-----------------TGACTGTGTATGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--TGTTTGT--ATGTGTGTG.........................................................................................................................................................................................................................................................1830.331001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................AGCGCGTGC-----------------------------------------------------GT--------GCGTGTG----T------G------------....................................................................................................................................................................................................................................................................................................................................................................................2040.251000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................AGCGCGTGC-----------------------------------------------------GT--------GCGTGTG----T------G------------T...................................................................................................................................................................................................................................................................................................................................................................................2140.251000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................CGTGC-----------------------------------------------------GT--------GCGTGTG----T------G------------TA------------T------...............................................................................................................................................................................................................................................................................................................................................................1950.201000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TGC-----------------------------------------------------GT--------GCGTGTG----T------G------------TA------------T------GTG----T------.................................................................................................................................................................................................................................................................................................................................................2190.111000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTG----T------G------------TA------------T------GTG----T------GTG..............................................................................................................................................................................................................................................................................................................................................18200.102000000000000000000000001000000000000000100000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TG----T------G------------TA------------T------GTG----T------GTGTTTGTT........................................................................................................................................................................................................................................................................................................................................20120.081000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATATGTGTGTGT----------G-----T.....................................................................................................................................................................................18200.051000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATATGTGTGTGT----------G-----TG....................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................GCGTGC-----------------------------------------------------GT--------GCGTGTG----T------G------------T...................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000001000
droMoj3
TTGCCTTTTCCC----TGCACAGCCAAAGCAGCAGAGCCAAGCG-----------------------------------------------------------------------------------------------------------AAGT---------------CGCGTCGCG---GTCGTG-CC------------------------TG------TGTCTGCGTT----T----------------------------------------TTGTGAC----TGTGACTTT---------------------------------GCGTGCGTG--TGTGTGCTT----------------------------------GCTTATTT-G------TAT--GTGTGTG----T--G--CG------------TG------------T------GTG----TGTGTCAG-TTTTGTTGTCTGTC-GTCGCTTAACACTGCGCGCGC--GATTTGTCAGTGTATGTGTGCGAGCGTGCGTATGTGT--GT----------------------------------------GTGTGAGTGAGTCTGTGTG----CG--TG-----TGC-GTGTGCTC-------GTGA-TAGC--------------------------TCGAAACAGTGTGACCATACATCTTTATATGTATATAATTATATATATACATACA-------CTAATACAT------AAGCACACGCGTACATGGC--------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................GCAGCAGAGCCAAGCG-----------------------------------------------------------------------------------------------------------AAGT---------------CG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCGAGCGTGCGTATGTGT--..................................................................................................................................................................................................................................................................2211.001001000
..............................AGCAGAGCCAAGCG-----------------------------------------------------------------------------------------------------------AAGT---------------CGCGTCGCG---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------GTGTGAGTGAGTCTGTGT......................................................................................................................................................................................................1940.251100000
droGri2
TTGCCTTTTCC-----TGCACAGCCA----AGCAGAGCCAAGCG-----------------------------------------------------------------------------------------------------------GAGT----------CGCG-A---GCGT---GGTCGTG-CC------------------------TGTGTCTGTGTCTGTGTCTGCGACTGTCTGTGAC------------------------------TGTGAC----TGTG--------------ACTTGTGTATGTG----------CGTGCGTG----CG--------------TGCTTGTGTGTGTGGTGT-GTGTCTGTGTCTT---GGTC----TGT--GTCTCTG------------------------TGTGTG--------T------GTG----T------GTGCTTGTTGTCTGTC-GTCGCTTAACACTGCGCGCGC--GTTTTGTCATC--------------------GTGTGA--GTGGATGTATT-TGTCT------------GTGTGTGCGT---CTGTGTGTGTGTGTGCGT------GTGT--------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
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Generated: 05/18/2015 at 01:30 PM