ID:

dsi_18635

 Coordinate:

2r:4779172-4779321 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.7 -30.7 -30.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGCGAAAAACCGAAGCGAAGAGGCCAAGGAGTTTATAAATCAATTTTTGTGTATGTCAGTCCCCGCGATTCCCATTGCAATTGGTATTGAGTAGTTTCCGGGTCCAGAATCGCAGGTCCCCAGTTCCCGTGGTCAAATTTCCATATCATGGTGTACGTGCGAAATGCGAAACCTGATGGAAAAGTGATGGCGACAGCGGTCTTTTGTTTGTGTGCGGCAGTACGCGCGTGTGTCTGTGTATGAATAATGC
*********************************************************************..(((.......)))...............(((.((.........)).)))..(((..(((.((((..((((((..(((.(((.....(((.....)))..))))))))))))..)))).)))..)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
..............................................................................................................................................................GCGAAATGCGATACCTGGTG........................................................................ 20 2 1 7.00 7 2 2 2 0 0 0 1 0 0 0
.............................................................................................................................................CATATCATAGTGGAAGTGCGA........................................................................................ 21 3 1 2.00 2 0 0 0 0 1 0 0 1 0 0
..............................................................................................................................................................GCGAAATGCGATACCTGGTGG....................................................................... 21 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................CGAAATGCGAAACTTGATCGAAG.................................................................... 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................TCCCATTGCAATTGGTATTGAGTAGT........................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................TGGAAAAGTGATGGCGACAGCGGT.................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................GCGAAATGCGATACGTAATGG....................................................................... 21 3 6 1.00 6 0 6 0 0 0 0 0 0 0 0
......................................................................................................TCCAGAATCGCAGGTCCCCAG............................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GCGAAATGCGATACCTGGT......................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0
AGCGAAAAACCGAAGCGAAGG..................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................GCGAAATGCGATACCTGGTGT....................................................................... 21 3 2 1.00 2 0 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................GCGAAATGCGATACCTGG.......................................................................... 18 2 4 0.50 2 0 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................GCGAAATGCGATACCTGGTGC....................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGATGACGACTGCGGTTTTTT............................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................GTCCGAAATGCGAAACTTGA.......................................................................... 20 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................ATGGAAAAGTGACGGCGAAA....................................................... 20 2 3 0.33 1 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................AGCGAAATGCGATACCTGGTG........................................................................ 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................AGCGAAATGCGATACCTG........................................................................... 18 2 6 0.33 2 0 0 2 0 0 0 0 0 0 0
.................................................................................................................AGGTCCCCAGTTCTCCTG....................................................................................................................... 18 2 7 0.29 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................GCAGGTCCCCGGTTC............................................................................................................................ 15 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................AGGTCCCCGGTTCCC.......................................................................................................................... 15 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................ATGGCGAAAGCGGTCCT............................................... 17 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................GTTCCCGTGGTCTAAGGTC............................................................................................................. 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................CGAAATGCGATACCTGG.......................................................................... 17 2 14 0.07 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................AGCGAAATGCGATACCTGGT......................................................................... 20 3 15 0.07 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TCGCTTTTTGGCTTCGCTTCTCCGGTTCCTCAAATATTTAGTTAAAAACACATACAGTCAGGGGCGCTAAGGGTAACGTTAACCATAACTCATCAAAGGCCCAGGTCTTAGCGTCCAGGGGTCAAGGGCACCAGTTTAAAGGTATAGTACCACATGCACGCTTTACGCTTTGGACTACCTTTTCACTACCGCTGTCGCCAGAAAACAAACACACGCCGTCATGCGCGCACACAGACACATACTTATTACG
**************************************************..(((.......)))...............(((.((.........)).)))..(((..(((.((((..((((((..(((.(((.....(((.....)))..))))))))))))..)))).)))..)))...********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
....................................................................................................................................................................................................GCCAGAAAACAAACACACGCC................................. 21 0 1 1.00 1 0 1 0 0 0
......................................................................................................GGGTCTTAGCGTCCAGGGGTC............................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................AGGTCTTAGCGTCCAGGGGTC............................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.....................................................................................................CAGGTCTTAGCGTCCAGGGGT................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0
........TGGCTTCGCTTCTCCGGT................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 1 0
..................................................................................................................CCAGGGGTCAAGGGC......................................................................................................................... 15 0 2 0.50 1 0 0 0 0 1
.................................................................................................................TCCAGTTGTCAATGGCACCA..................................................................................................................... 20 3 3 0.33 1 0 1 0 0 0
...................................ATTTAGTTGAAAACACATGAA.................................................................................................................................................................................................. 21 3 15 0.13 2 0 0 2 0 0

Generated: 04/23/2015 at 03:19 AM