ID:

dsi_1863

 Coordinate:

3l:16021947-16022240 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_16021737_16021946_+]; CDS [3l_16021737_16021946_+]; CDS [3l_16022241_16022397_+]; exon [3l_16022241_16022397_+]; intron [3l_16021947_16022240_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTCGGCGGTGGAGGTTTCCAAGATCTCGCACGATAATAGCGAGAAGCGTGGTAGGTGTTATGTTTCCATTCGCCGTGCTCCGTCCGCATTTCCAGCCATTACCACATTTCCACAGTTTGCATCACGCATTCGATCGCCCTGCCCTCACTTTTCATTTTCCTCGCTGTACAAAGAACAACCCCAAGCTAATACTGGTTACTAACATACGTTTGCTTTTGCCGCTTTGTTTCTTCTTTATTTTCTTTTCCCACTAACCCAACTAATCCCCACTCGGTTATTTGGTACTCGAAACTGTGTGAAAAATATGGCCAACTGGCGTTCCTCTTGCACTCTGATTAATGTAGTTTTAACAGAAGCTCTATCAGACACAGAGGCGGATGCCAGCGGAAAGCCG
**************************************************...((((..(((....))).))))((((.......))))..............(((((....(((..((((..........((.((((.((.((....(((((((.....(((..((((((((((.(((...((((.......(((.((........))..)))......)))).)))..))))))....................(((.(((((.......))))).))))))).)))......)))))))....)).))...)))).))....))))..)))...)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR902009
testis
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
...............TTCCAAGATCTCGCACGATAAT..................................................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................AAACTGTGTGAAAAGTATGG...................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0
.............GTTTCCAAGATCTCGCACGATAATAGCGA................................................................................................................................................................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................CTATCAGACACAGAGGCGG................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0
................TCCAAGATCTCGCACGATAATAG................................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................TTTAACAGAAGCTCTATC............................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0
.........................TCGCACGATAATAGCGAGAAGCGTGA....................................................................................................................................................................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 1 0 0
...............TTCCAAGATCTCGCACGATAATAGC.................................................................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................TCCGCGTTTCCAGACTTTACC................................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 1 0
..................................................................................TCCGCGTTTCCAGACTTTAC.................................................................................................................................................................................................................................................................................................... 20 3 10 0.30 3 0 0 0 0 0 0 3 0
.........................................AGAATCGTGGTAGGCGTTT.............................................................................................................................................................................................................................................................................................................................................. 19 3 8 0.13 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................TGGTACTCGAAAGGGTG.................................................................................................. 17 2 10 0.10 1 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................................................TACTCGAAAGTGTGTGGA.............................................................................................. 18 2 11 0.09 1 0 0 0 0 0 0 0 1
..................................................................................TCCGCGTTTCCAGCCTTT...................................................................................................................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 1 0
................................................................................................................................................................TTGCTGTACAAAGAA........................................................................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 1 0 0 0 0
..................CAAGACCTCGCGCGAT........................................................................................................................................................................................................................................................................................................................................................................ 16 2 18 0.06 1 0 0 0 0 0 0 0 1
........................................................................................................................ATCACGCATTGGGTCACC................................................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 1 0
........................................................................................................CATTTCCACAGGTTGTA................................................................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

GAGCCGCCACCTCCAAAGGTTCTAGAGCGTGCTATTATCGCTCTTCGCACCATCCACAATACAAAGGTAAGCGGCACGAGGCAGGCGTAAAGGTCGGTAATGGTGTAAAGGTGTCAAACGTAGTGCGTAAGCTAGCGGGACGGGAGTGAAAAGTAAAAGGAGCGACATGTTTCTTGTTGGGGTTCGATTATGACCAATGATTGTATGCAAACGAAAACGGCGAAACAAAGAAGAAATAAAAGAAAAGGGTGATTGGGTTGATTAGGGGTGAGCCAATAAACCATGAGCTTTGACACACTTTTTATACCGGTTGACCGCAAGGAGAACGTGAGACTAATTACATCAAAATTGTCTTCGAGATAGTCTGTGTCTCCGCCTACGGTCGCCTTTCGGC
**************************************************...((((..(((....))).))))((((.......))))..............(((((....(((..((((..........((.((((.((.((....(((((((.....(((..((((((((((.(((...((((.......(((.((........))..)))......)))).)))..))))))....................(((.(((((.......))))).))))))).)))......)))))))....)).))...)))).))....))))..)))...)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
................................................................................................................................................AGTGAAGAGTCAAAGGAG........................................................................................................................................................................................................................................ 18 2 10 4.40 44 44 0 0 0 0 0 0 0
...............................................................................................................................................GAGTGAAGAGTCAAAGGAG........................................................................................................................................................................................................................................ 19 2 6 3.67 22 22 0 0 0 0 0 0 0
..............................................................................................................................................TGAGTGAAGAGTCAAAGGAG........................................................................................................................................................................................................................................ 20 3 16 1.19 19 19 0 0 0 0 0 0 0
................................................................................GCAGGCGCAAAGGTCTGAAAT..................................................................................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................ACCGGTTGACCGCAAGGAGAA.................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................TTGTCTTCGAGATAG............................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................CCCGTTGACCGCAAGGTG...................................................................... 18 2 5 0.20 1 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................................................................TTGTCTCCGAGATAG............................... 15 1 6 0.17 1 0 0 1 0 0 0 0 0
.................................................................GGTAATCGTCACGAGGCAGGT.................................................................................................................................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 1 0 0 0 0
................................................................................................GTAATGGTGTATAGGT.......................................................................................................................................................................................................................................................................................... 16 1 7 0.14 1 0 0 0 0 0 0 1 0
................................................................CGGTAAGCGGCAAGAGGCAGGT.................................................................................................................................................................................................................................................................................................................... 22 3 7 0.14 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................AAAAGGATGCTGGGGTTGAT.................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TGAGCTTTGACAAACT............................................................................................... 16 1 9 0.11 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................................................................................AAAATTGTCTTTGAGGTA................................ 18 2 9 0.11 1 0 0 0 0 1 0 0 0
.............CAAATGTTCTAGAGC.............................................................................................................................................................................................................................................................................................................................................................................. 15 1 9 0.11 1 0 1 0 0 0 0 0 0
..................................................................................................AATGGTGTAATGGAGTGAA..................................................................................................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 2
..................................................................................AGGCGCAAAGGTCTGAAATG.................................................................................................................................................................................................................................................................................................... 20 3 10 0.10 1 0 1 0 0 0 0 0 0
................................................................AGGTAAGAGTCACGAGGCAGGA.................................................................................................................................................................................................................................................................................................................... 22 3 10 0.10 1 0 0 0 1 0 0 0 0
...............................................................................................................................TAAGCTTGCGGGCTGGGAG........................................................................................................................................................................................................................................................ 19 3 10 0.10 1 0 0 1 0 0 0 0 0
.......................................................................................................................GAAGTGCGTAAGCTA.................................................................................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................TCCCGTTGACCGCAAGGTG...................................................................... 19 3 12 0.08 1 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................................................................................................................AAAATTGGTGTCGAGATAGT.............................. 20 3 14 0.07 1 0 1 0 0 0 0 0 0
...........................................................................................................................TGCGTAAGCTGGTGAGACG............................................................................................................................................................................................................................................................ 19 3 16 0.06 1 0 0 0 0 0 0 1 0
............................................................ACAAAGTTAAGCGGC............................................................................................................................................................................................................................................................................................................................... 15 1 17 0.06 1 0 0 0 0 0 0 1 0
..............................................................................AGGAAGGCGCAAAGGTC........................................................................................................................................................................................................................................................................................................... 17 2 18 0.06 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................CTTTGTCTTCGAGATAG............................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................TTTGTCTTCGAGATA................................ 15 1 20 0.05 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................TCGGGTCGATTATGACCA...................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0

Generated: 04/24/2015 at 01:36 AM