ID:

dsi_18621

 Coordinate:

3l:7923076-7923130 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7922765_7923075_+]; CDS [3l_7922765_7923075_+]; CDS [3l_7923131_7923603_+]; exon [3l_7923131_7923603_+]; intron [3l_7923076_7923130_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------##################################################
AGCGCGCACTTTATCAAGCAGTGGCTTCACGACACGGACTGTTTCCTAGGGTAAGAATGGATATGCTTGTTGATGAGGTAGATAGTTTATTGTTACGTTTTCCAGCATCCACGATCGCAAACTTTGCGTCCTGGGTCTGTGCACCCTCATCTCGC
**************************************************((((.(((((((.(((((.......)))))....))))))).)))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
....................................................................GATGATCAGGTAGATAGGTTA.................................................................. 21 3 2 14.00 28 21 0 7 0 0 0 0 0 0 0
....................................................................GATGATCAGGTAGATAGGTT................................................................... 20 3 3 14.00 42 34 1 6 0 0 1 0 0 0 0
.........................TTCACGACACGGACTGTTTCCTAGGC........................................................................................................ 26 1 1 4.00 4 2 2 0 0 0 0 0 0 0 0
......................................................................................................................AAACTTTGCGTCCTGGGTCTGT............... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
......................GGCTTCACGACACGGACTGTTTC.............................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........................CACGACACGGACTGTTTCCTAG.......................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.........................TTCACGACACGGACTGTTTCC............................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.......................................................................GATCAGGTAGATAGGTTA.................................................................. 18 2 4 1.25 5 4 0 0 0 0 1 0 0 0 0
.....................TGGCTTCACGACACGGACTGTT................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............CAAGCAGTGGCTTCACGACACGGACT................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................CGCGACACGGACTGTTTCCTAG.......................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................CTTCACGACACGGACTGTTTCCTAGG......................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................GGCTTCACGACACGGACT................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................ATCCTCGATCGCAAACTTTCTGT.......................... 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................GTGGCTTCACGACACGGACT................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................TATGCTTGATGATGAGGAAGAC........................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................TGATCAGGTAGATAGGTT................................................................... 18 2 3 0.67 2 1 0 0 0 0 1 0 0 0 0
.............................CGACACGGACTGTTTCCC............................................................................................................ 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................CTTCAGGACTCGGACTGTT................................................................................................................ 19 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0
......................................................................TGATGAGGTAGATAGGCTA.................................................................. 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
....................................................................GATGATCAGGTAGATAGTCT................................................................... 20 3 5 0.40 2 2 0 0 0 0 0 0 0 0 0
......................................................................TGATGAGGTAGATAGGCT................................................................... 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0
....................................CACTGTTTCCTAGGG........................................................................................................ 15 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0
....................................................................GGTGATCAGGTAGATAGGTT................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
....................................................................GATGATGAGGTAGATAGGCT................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0
................................................................GCTTGTTGGTGAGGTAA.......................................................................... 17 2 20 0.10 2 0 0 0 1 0 0 0 1 0 0
....................................................................GATGATGAGGTAGATAGGC.................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0
................................................................GCTTGTTGATGAGCT............................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0
................................................................GCTTGTTGGTAAGGTA........................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.......................................................................GATCAGGTAGATAGGCTA.................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCGCGCGTGAAATAGTTCGTCACCGAAGTGCTGTGCCTGACAAAGGATCCCATTCTTACCTATACGAACAACTACTCCATCTATCAAATAACAATGCAAAAGGTCGTAGGTGCTAGCGTTTGAAACGCAGGACCCAGACACGTGGGAGTAGAGCG
**************************************************((((.(((((((.(((((.......)))))....))))))).)))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
...............................TGTGCCTGACAAAGGATCCG........................................................................................................ 20 1 1 1.00 1 1 0 0 0
..........................AGTGCTGTGCTTGAC.................................................................................................................. 15 1 4 0.25 1 0 1 0 0
.....................ACCGAGGCGCTGGGCCTGA................................................................................................................... 19 3 15 0.07 1 0 0 0 1
.......TGAAATAGATCGTCA..................................................................................................................................... 15 1 17 0.06 1 0 0 1 0
..................................GCCTGACCACGGATCC......................................................................................................... 16 2 19 0.05 1 0 0 1 0
...........................................................................................CAATACAACAGGTCGTA............................................... 17 2 20 0.05 1 0 1 0 0

Generated: 04/24/2015 at 10:33 AM