dsi_18620

AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAACTAAAGCTAAGCCAAAACCGAAACCAGAGTTCGAAACCTAGCAAAACCAAACGTAAGCGAACCGTGTTCAAACAAACAAACCAACCAACATCAACAAACCAACTCCAAAGAATGCTCAAAAAAGAAAATATGAAATGAACAAAAACAAAACAACGACCGAGAAGAACTTTAACTATTAATCCCCGAGT ************************************************...............................(((..((..(((((....((.((..........)).)))))))..))))).....................................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
..................................................................................................................................................................................................................AACAACGACCGAGAAGAACTTTAAC...............	25	0	1	1.00	1	0	1	0	0
............................................................................................TCGAAACCTAGCAAAACCAAACGTA.....................................................................................................................................	25	0	1	1.00	1	1	0	0	0
.....CGTCCACCGGCCCGGTCT...................................................................................................................................................................................................................................	18	2	4	0.25	1	0	0	1	0
...........................................................................................................................................................................................................................CGCGAAGAACTTTACCT..............	17	2	8	0.13	1	1	0	0	0
.....................................ATTAGTGTTAAAAGTAAGGA.................................................................................................................................................................................................	20	3	17	0.06	1	0	0	0	1

TTGGAGCAGGTGGCCGGTCCAGCTTAGGAGTCGGTTTGACTGACAATTTTCATTCCTAATTTGATTTCGATTCGGTTTTGGCTTTGGTCTCAAGCTTTGGATCGTTTTGGTTTGCATTCGCTTGGCACAAGTTTGTTTGTTTGGTTGGTTGTAGTTGTTTGGTTGAGGTTTCTTACGAGTTTTTTCTTTTATACTTTACTTGTTTTTGTTTTGTTGCTGGCTCTTCTTGAAATTGATAATTAGGGGCTCA ************************************************...............................(((..((..(((((....((.((..........)).)))))))..))))).....................................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553488 RT_0-2 hours eggs	M023 head
.......................TTAGGAGCCGGTTGGACTG................................................................................................................................................................................................................	19	2	1	1.00	1	1	0	0	0	0	0
.......................................................................................TCTCAAGCTTTGGATCGTTTT..............................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0
..........................GGTGTCGCTTTGTCTGACAATT..........................................................................................................................................................................................................	22	3	2	0.50	1	0	0	1	0	0	0
...........................GAGTCGGTTGGACTG................................................................................................................................................................................................................	15	1	9	0.44	4	1	0	2	0	1	0
.........................GGGAGTAGGTTTGACTGACACT...........................................................................................................................................................................................................	22	3	3	0.33	1	0	1	0	0	0	0
.............................................................................TTGGTTATGGTCTCAAGC...........................................................................................................................................................	18	2	4	0.25	1	0	0	0	1	0	0
..............CGGCCCAACTTAGGAG............................................................................................................................................................................................................................	16	2	20	0.25	5	0	0	5	0	0	0
...............................................................................................................................CAAGTTTGTTTGATGGATTG.......................................................................................................	20	3	6	0.17	1	0	0	1	0	0	0
GTGGAGCAGGGGGCCGGCCC......................................................................................................................................................................................................................................	20	3	7	0.14	1	1	0	0	0	0	0
.........................................................................................................................................................CTTGTTTGTTTGAGGTTT...............................................................................	18	2	20	0.10	2	0	0	1	0	0	1
................................................................................................................................................TTGGTTGTCTTTGGTTGGTTGA....................................................................................	22	3	10	0.10	1	0	0	1	0	0	0
...........CGGCGGCCCAGCTTAGGAG............................................................................................................................................................................................................................	19	3	16	0.06	1	0	0	0	0	1	0
....................AGCTTAGTAGTCGGT.......................................................................................................................................................................................................................	15	1	16	0.06	1	1	0	0	0	0	0
..........................GGAGTCGGCTTGAATG................................................................................................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0
...................................................................................................................ATGCGCTTGGCACATGTC.....................................................................................................................	18	3	20	0.05	1	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:1993890-1994139 -	dsi_18620	AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AGCTAAGCCA------------A----AACCGAAA-CCAGAGTTCGAA------A-CCTAGC------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAA-----CAAA-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAA-AGAAA-AT----------------ATGAAATGAACAAA-A------ACAA-----------A-------------------------ACAACGACCG--------------AGAAG-AACTTTAACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----
droSec2	scaffold_2:2121590-2121839 -		AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AGCTAAGCCA------------A----AACCGAAA-CCAGAGTTCGAA------A-CCTAGC------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAA-----CAAA-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAA-AGAAA-AT----------------ATGAAATGAACAGA-A------ACAA-----------A-------------------------ACAACGACCG--------------AGAAG-AACTTTAACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----
dm3	chr3L:2090800-2091049 -		AACCTCGTCCACCGGCCAGGTTGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AACTAAGCCA------------A----AACCGAAA-CCAGAGTTCGAA------A-CCTAGC------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAA-----CAAA-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAA-AGAAT-AT----------------ATGAAATGAACAAA-A------ACAA-----------A-------------------------ACAACGACCG--------------AGAAG-AACTTTAACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----
droEre2	scaffold_4784:2089531-2089780 -		AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AGCTAAGCCA------------A----AACCGAAA-CCAGAGTTCGAA------A-CCTAGC------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAA-----CAAA-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAA-AGAAA-AT----------------ATGAAATGAACAAA-A------ACAA-----------A-------------------------ACAACGACCG--------------AGAAG-AACTTTAACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----
droYak3	3L:2048554-2048805 -		AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAGC-TAA-AACTAAGCCA------------A----AACCGAAA-CCAGAGTTCGAA------A-CCTAGC------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAA-----CAAA-CCAACCAACATCAACAA---------------AACCAACTCCAAAGAATGCTCAAAAA-AGAAA-AT----------------ATGAAATGAACAAAAA------ACAA-----------A-------------------------ACAACGACCG--------------AGAAG-AACTTTAACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----
droEug1	scf7180000409091:177350-177608 +		AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-GACTAAGCCA------------A----AACCGAAT-CCAGAGTTCGAA------A-CCAAGC------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAACA-AACAAA-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAAAAGAAA-------------------AAGAAAAGAACAAA-AACAAAAACAA-----------A-------------------------ACAACGACCG--------------TGAAG-AACTTTTACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----
droBia1	scf7180000302428:8818181-8818437 -		AACTTCGTCCACCGGCCAGGTTGAGTCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AACTAAGCCA------------A----AACCGAAA-CCAGAGTTCGAA------A-CCAAGCG-----A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAACAAAACAAA-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAA--GATA-A-----------------AAGAAAAGAACAAA-AACAAAA---A-----------A-------------------------ACAACGACCG--------------TGAAG-AACTTTTACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----
droTak1	scf7180000414400:21942-22209 -		CACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AACTAAGCCA------------A----AACCGAAA-CCAGAGTTCGAA------A-CCAAGCG-----A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAACA-AACAAA-CCAACCAACATCAACAA---------------AACCAACTCCAAAGAATGCTCAAAAA-AGAAA-AAAAAAACAAGAAAAGAAAAGCAAAGAACAAA-----------A-----------A-------------------------ACAACGACCG--------------TGAAG-AACTTTTACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----
droEle1	scf7180000491249:3400052-3400319 +		AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAT-AACTAAGCCA------------A----ACCCGAAA-CCAGAGTTCGAA------A-CCAAGT------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAA----ACAAATCCAACCAACATCAACAA---------------AACCAACTCCAAAGAATGCTCAAAAAAAGAAA-A-----------------AAGAAAAGAACAAA--------ACAA-----------AACAAAAAAGAAA---------AGAAACAACGAACG--------------TGAAG-AAATTTAACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----
droRho1	scf7180000779211:23568-23827 -		AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AACTAAGCCA------------A----ACCCGAAA-CCAGAGTTCGAA------A-CCAAGT------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAAA--AAAAAA-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAA-AGTAA-AA----------------CAAAAAAGAACAAAAAACAAAAACAA-----------A-------------------------ACAACGAACG--------------TGAAG-AACTTTTACTAT-------------------------------------------------------------------------------------------------------------------------------ATATCCCCA----AGT-----
droFic1	scf7180000453052:965138-965374 +		AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AACTAAGCCA-----------------ACCCAAAA-CCAGAGTTCGAA------A-CCAAGT------A--AAACCAAACGTAAGCGAACCGTGTTCAAA-------------------A-----C--A-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAA-AGAA-------------------------AAGAACAAA-A------ACAA-----------A-------------------------ACAACGACCG--------------TGAAGAAACTTTTACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----
droKik1	scf7180000302441:1712125-1712409 +		GACGTCGTCCACCGGCCAGGTTGAGTCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAAAAGCTAAGCCA------------A----AACCGAAACCCAGAGTTCGAA----AAA-CTAAGC------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAACC-AACCAA-CCAACCAACATCAAC---------------------AACTCCAAAGAATGCTCAAAA---------------------------------GAACAAAAAACAAAAAAAAAATATACAA--AA-AAAAAAGAAAACTAAATCAAG-AACAACGACCG--------------TTAAG-AA-------------TAC-CAAT---------------------------------------------------------------------------------------------------------ACTGACGCAACGAATCCCCG----AGT-----
droAna3	scaffold_13337:734265-734529 +		GACCTCGTCCACCGGCCAGGTCGAGTCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AACTAAGCCA------------AAACAAACCGAAA-CCAGAGTTCGAA------AATCAAGC------A--AAACCAAACGTAAGCGAACCGAGTTCAAA----------------CA---------AA-TCAACCAACATCAACACAAAACAT----------AAAACCCCAAAGAATGCTCAAAAA-AAAAAAA--AAAACAAAA--------------------------------AATGTA--AA-A-------------------------AAAAGAACCG---------------------------ACTATTAATACCCAAT---------------------------------------------------------------------------------------------------------ACTGACGCAACGAATCCCCG----AGT-----
droBip1	scf7180000395155:21950-22209 -		GACCTCGTCCACCGGCCAGGTCGAGTCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AACTAAGCCA------------A-ACAAACCGAAA-CCAGAGTTCGAA------AATCATGC------A--AAACCAAACGTAAGCGAACCGAGTTCAAA----------------CA---------AA-CCAACCAACATCAACACAAAACAG----------TAAACCCCAAAGAATGCTCAAAAA-AA-------CAATCAAAA--------------------------------AATGTA--AAAA-------------------------AAAAGGACCG---------------------------ACTATTAATACCCAAT---------------------------------------------------------------------------------------------------------ACGGACGGAACGAATCCCCG----AGT-----
dp5	XR_group6:12000470-12000816 -		GACCTCGTCCACCGGCCAGGTCGAGTCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAACATAAAAACTAAGCCA------------A----AACCGAAA-CCAGAGTTCGACAAAAATA-CCAAGCAAACACA--AAACCAAACGTAAGCGAACCGTGTTCAACAAAAACAAAAACAAAACAAACAAAAAAAA-----C---CATCAACAACCAACAGAAAAAAAAAATCAACTCCAAAGAATGCTCAAAAC-A-------ATACT----------------------------------------------------------------------------------------------------------------------------------GAAAAAATACTAGAAAATACTGAAAAATAGTTTCAGAGCTGAGAATACTGAGAAGTACAGAATACTGAAAAATACTGAAACGAAT----------------AACTGACGCAACGAATCCCCAAAAAAGC-----
droPer2	scaffold_33:21330-21672 -		GACCTCGTCCACCGGCCAGGTCGAGTCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAACATAAAAACTAAGCCA------------A----AACCGAAA-CCAGAGTTCGACAAAAATA-CCAAGCAAACACA--AAACCAAACGTAAGCGAACCGTGTTCAACAAAAACAAAAACAAAACAAAA--AAAAAA-----C---CATCAACAACCAACAGAAAA-AAAAATCAACTCCAAAGAATGCTCAAAAC-A-------ATACT----------------------------------------------------------------------------------------------------------------------------------GAAAAAATACTAGAAAATACTGAAAAATAGTTTCAGAGCTGAGAATACTT-CAAGTACAGAATACTGAAAAATACTGAAACGAAT----------------AACTGACGCAACGAATCCCCAAAAAAGC-----
droWil2	scf2_1100000004729:1303434-1303708 +		AACTTCCTCAACAGGACAAGTCGAGTCATCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAAGTAACATCTAAGCAAATGCAAAAAACAAAACAAACCAAAA-CCAGAGTTCGAA------A-CAAAGT------A---AACCAAACGTAAGCGAAC----------------------------------------------------------------------------AACTCCAAAGAATGCTCAAAA-----------------------------------------------------------------------------------------ACAACGACCA--------------ACAAC-----------------AC-CAATAAAATATATATAT--TTATATACTTAAATATAAATGCATATATATTTATA-------------------------------------TAAACAACAACAACAAAAACTGACGCAACGAATCCTAA-AAGATA-----
droVir3	scaffold_13049:12017975-12018185 +		GACTTCGTCAACTGGACAGGTCGAGTCATCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAAAAACTTAGCAA-----------------AACCAAAA-CCAGAGTTCGTA------A-AC-AGC------AAGAAAACAAACGTAAGCGAACAGTGTTCGAA------------------------------------------------------------------AACTCCAAAGAATGCTCAAAAA-AC-------------------------------------------------------------------------------------ATAACGACCAAAAA--------CGAAAGG-AATTATTCATAT--------------------------------------------------------------------------------------------------------------------AT---------TTATATATG----CATATCTT
droMoj3	scaffold_6680:8802546-8802772 -		GACCTCGTCAACTGGACAGGTCGAGTCATCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAAACGCTAAGCCA-----------------AACCAAAA-CCAGAGTTCGTA------A-AC-AGC------AAGAAATCAAACGTAAGCGAACAGTGTTCGAA------------------------------------------------------------------ATCTCCAAAGAATGCTCAAAAG-AAAAAAAA----------------AAAAAAAGAACAAC-A-------CAC-----------A-CAC---------------------ATAACGACCAAA------------AAAAG-AACCTTAAGAAC-------------------------------------------------------------------------------------------------------------------------------T-ATACGTA----TAT-----
droGri2	scaffold_15110:11458177-11458381 +		GACTTCGTCTACGGGACAGGTCGAGGCATCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAAAAACTAAGCAA-----------------AACCAAAA-CCAGAGTTCGTA------A-ACAACA-------AGAAAAGAAACGTAAGCGAACAGTGTTCGAA------------------------------------------------------------------AACTCCAAAGAATGCTCAAAAA-AC-------------------------------------------------------------------------------------ACAACGACCAAAAACCGATAAACAAAAAA-AAATATTTATAT-------------------------------------------------------------------------------------------------------------------------------ATAT-----------T-----

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AGCTAAGCCA------------A----AACCGAAA-CCAGAGTTCGAA------A-CCTAGC------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAA-----CAAA-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAA-AGAAA-AT----------------ATGAAATGAACAAA-A------ACAA-----------A-------------------------ACAACGACCG--------------AGAAG-AACTTTAACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................................................................................................A-------------------------ACAACGACCG--------------AGAAG-AACTTTAAC.......................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TCGAA------A-CCTAGC------A--AAACCAAACGTA...............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AGCTAAGCCA------------A----AACCGAAA-CCAGAGTTCGAA------A-CCTAGC------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAA-----CAAA-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAA-AGAAA-AT----------------ATGAAATGAACAGA-A------ACAA-----------A-------------------------ACAACGACCG--------------AGAAG-AACTTTAACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................................................................................................................AAAGAATGCTCAAAAA-AGAA.................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
...............................................................................................AACCGAAA-CCAGAGTTCGAA------A-CC........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
................................................................................................................................................................................................................................................................................................GAACAGA-A------ACAA-----------A-------------------------ACAACGACCG--------------AGA...................................................................................................................................................................	26	1	1.00	1	1	0	0	0
...CTCGTCCACCGGCCAGGTCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
......................................................................................................................................................AAGCGAACCGTGTTCAAA----------------CA............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................................................................................................................A-----------A-------------------------ACAACGACCG--------------AGAAG-AACTT...........................................................................................................................................................	22	1	1.00	1	1	0	0	0

dm3

AACCTCGTCCACCGGCCAGGTTGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AACTAAGCCA------------A----AACCGAAA-CCAGAGTTCGAA------A-CCTAGC------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAA-----CAAA-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAA-AGAAT-AT----------------ATGAAATGAACAAA-A------ACAA-----------A-------------------------ACAACGACCG--------------AGAAG-AACTTTAACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................GAAG-AACTTTAACTAT-------------------------------------------------------------------------------------------------------------------------------TAATC................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TCGAA------A-CCTAGC------A--AAACCAAACGTAA..............................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................ACGTAAGCGAACCGTGTTCA................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................ACGTAAGCGAACCGTGTTCAAA----------------CA............................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CAACGACCG--------------AGAAG-AACTTTAAC.......................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................A-------------------------ACAACGACCG--------------AGAAG-AAC.............................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TCCTCAGCCAAACTGACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AACTAAGCCA------------A----AACCGAAA-CCAGAGTTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................GAGTTCGAA------A-CCTAGC------A--AAACCAAACG.................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................AGCGAACCGTGTTCAAA----------------CAAA-----CAAA-A...............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TCAAAAA-AGAAT-AT----------------ATGAAATGAACAAA-A------A......................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................A----AACCGAAA-CCAGAGTTCGAA------A-CC........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................ACAA-----------A-------------------------ACAACGACCG--------------AGAAG-AACTTTAAC.......................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................CCAACCAACATCAACAA----------------ACCAACTCCAAA...................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GAAG-AACTTTAACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCC.............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................ACTCCAAAGAATGCTCAAAAA-.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AGCTAAGCCA------------A----AACCGAAA-CCAGAGTTCGAA------A-CCTAGC------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAA-----CAAA-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAA-AGAAA-AT----------------ATGAAATGAACAAA-A------ACAA-----------A-------------------------ACAACGACCG--------------AGAAG-AACTTTAACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................AA-CCAGAGTTCGAA------A-CCTAGC------A--...........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................AA-CCAACCAACATCAACAA----------------ACC............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................A-----------A-------------------------ACAACGACCG--------------AGAAG-AAC.............................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................AA----------------ACCAACTCCAAAGAATGC.............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
.......................................................GATTAAAC-TAA-AGCTAAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................AAACGTAAGCGAACCGTGTTCAAA----------------CA............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...CTCGTCCACCGGCCAGGTCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................A------ACAA-----------A-------------------------ACAACGACCG--------------AGAAG-AACT............................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................CAAACGTAAGCGAACCGTGTTA.................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................AGAGTTCGAA------A-CCTAGC------A--...........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0

droYak3

AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAGC-TAA-AACTAAGCCA------------A----AACCGAAA-CCAGAGTTCGAA------A-CCTAGC------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAA-----CAAA-CCAACCAACATCAACAA---------------AACCAACTCCAAAGAATGCTCAAAAA-AGAAA-AT----------------ATGAAATGAACAAAAA------ACAA-----------A-------------------------ACAACGACCG--------------AGAAG-AACTTTAACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...CTCGTCCACCGGCCAGGTCGAATCCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................GGATTAAGC-TAA-AACTAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................GTTAAAAGTAAGGATTAAGC-T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................AGGATTAAGC-TAA-AACTAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................AACTAAGCCA------------A----AACCGAAA-CCAGAGTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................AACCAAACGTAAGCGAACCGTGTTC.................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................A-------------------------ACAACGACCG--------------AGAAG-AACTTT..........................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................AAA------ACAA-----------A-------------------------ACAACGACCG--------------AG....................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-GACTAAGCCA------------A----AACCGAAT-CCAGAGTTCGAA------A-CCAAGC------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAACA-AACAAA-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAAAAGAAA-------------------AAGAAAAGAACAAA-AACAAAAACAA-----------A-------------------------ACAACGACCG--------------TGAAG-AACTTTTACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AACTTCGTCCACCGGCCAGGTTGAGTCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AACTAAGCCA------------A----AACCGAAA-CCAGAGTTCGAA------A-CCAAGCG-----A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAACAAAACAAA-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAA--GATA-A-----------------AAGAAAAGAACAAA-AACAAAA---A-----------A-------------------------ACAACGACCG--------------TGAAG-AACTTTTACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AACTAAGCCA------------A----AACCGAAA-CCAGAGTTCGAA------A-CCAAGCG-----A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAACA-AACAAA-CCAACCAACATCAACAA---------------AACCAACTCCAAAGAATGCTCAAAAA-AGAAA-AAAAAAACAAGAAAAGAAAAGCAAAGAACAAA-----------A-----------A-------------------------ACAACGACCG--------------TGAAG-AACTTTTACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAT-AACTAAGCCA------------A----ACCCGAAA-CCAGAGTTCGAA------A-CCAAGT------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAA----ACAAATCCAACCAACATCAACAA---------------AACCAACTCCAAAGAATGCTCAAAAAAAGAAA-A-----------------AAGAAAAGAACAAA--------ACAA-----------AACAAAAAAGAAA---------AGAAACAACGAACG--------------TGAAG-AAATTTAACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AACTAAGCCA------------A----ACCCGAAA-CCAGAGTTCGAA------A-CCAAGT------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAAA--AAAAAA-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAA-AGTAA-AA----------------CAAAAAAGAACAAAAAACAAAAACAA-----------A-------------------------ACAACGAACG--------------TGAAG-AACTTTTACTAT-------------------------------------------------------------------------------------------------------------------------------ATATCCCCA----AGT-----	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AACCTCGTCCACCGGCCAGGTCGAATCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AACTAAGCCA-----------------ACCCAAAA-CCAGAGTTCGAA------A-CCAAGT------A--AAACCAAACGTAAGCGAACCGTGTTCAAA-------------------A-----C--A-CCAACCAACATCAACAA----------------ACCAACTCCAAAGAATGCTCAAAAA-AGAA-------------------------AAGAACAAA-A------ACAA-----------A-------------------------ACAACGACCG--------------TGAAGAAACTTTTACTAT-------------------------------------------------------------------------------------------------------------------------------TAATCCCCG----AGT-----	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GACGTCGTCCACCGGCCAGGTTGAGTCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAAAAGCTAAGCCA------------A----AACCGAAACCCAGAGTTCGAA----AAA-CTAAGC------A--AAACCAAACGTAAGCGAACCGTGTTCAAA----------------CAAACC-AACCAA-CCAACCAACATCAAC---------------------AACTCCAAAGAATGCTCAAAA---------------------------------GAACAAAAAACAAAAAAAAAATATACAA--AA-AAAAAAGAAAACTAAATCAAG-AACAACGACCG--------------TTAAG-AA-------------TAC-CAAT---------------------------------------------------------------------------------------------------------ACTGACGCAACGAATCCCCG----AGT-----	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GACCTCGTCCACCGGCCAGGTCGAGTCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AACTAAGCCA------------AAACAAACCGAAA-CCAGAGTTCGAA------AATCAAGC------A--AAACCAAACGTAAGCGAACCGAGTTCAAA----------------CA---------AA-TCAACCAACATCAACACAAAACAT----------AAAACCCCAAAGAATGCTCAAAAA-AAAAAAA--AAAACAAAA--------------------------------AATGTA--AA-A-------------------------AAAAGAACCG---------------------------ACTATTAATACCCAAT---------------------------------------------------------------------------------------------------------ACTGACGCAACGAATCCCCG----AGT-----	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................................................................................................................................AAAAGAACCG---------------------------ACTATTAATACC.............................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..........................................................................................AAACAAACCGAAA-CCAGAGTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................ATTAATACCCAAT---------------------------------------------------------------------------------------------------------ACTGACGCAACG....................	25	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................GTAAGCGAACCGAGTTCAAA----------------CA---------AA-TC..............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............................................................................................................GTTCGAA------AATCAAGC------A--AAACC......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................................................................................................................CGAA------AATCAAGC------A--AAACCAAACGTAAGC............................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AAGAACCG---------------------------ACTATTAATACCCA...........................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................AA-AAAAAAA--AAAACAAAA--------------------------------AA.................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0

droBip1

GACCTCGTCCACCGGCCAGGTCGAGTCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAA-AACTAAGCCA------------A-ACAAACCGAAA-CCAGAGTTCGAA------AATCATGC------A--AAACCAAACGTAAGCGAACCGAGTTCAAA----------------CA---------AA-CCAACCAACATCAACACAAAACAG----------TAAACCCCAAAGAATGCTCAAAAA-AA-------CAATCAAAA--------------------------------AATGTA--AAAA-------------------------AAAAGGACCG---------------------------ACTATTAATACCCAAT---------------------------------------------------------------------------------------------------------ACGGACGGAACGAATCCCCG----AGT-----	Size	Hit Count	Total Norm	Total
No Reads

dp5

GACCTCGTCCACCGGCCAGGTCGAGTCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAACATAAAAACTAAGCCA------------A----AACCGAAA-CCAGAGTTCGACAAAAATA-CCAAGCAAACACA--AAACCAAACGTAAGCGAACCGTGTTCAACAAAAACAAAAACAAAACAAACAAAAAAAA-----C---CATCAACAACCAACAGAAAAAAAAAATCAACTCCAAAGAATGCTCAAAAC-A-------ATACT----------------------------------------------------------------------------------------------------------------------------------GAAAAAATACTAGAAAATACTGAAAAATAGTTTCAGAGCTGAGAATACTGAGAAGTACAGAATACTGAAAAATACTGAAACGAAT----------------AACTGACGCAACGAATCCCCAAAAAAGC-----	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................ACACA--AAACCAAACGTAAGCGAACC.......................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................TAAGCGAACCGTGTTCAACAAAAACA.......................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................GAGTCCTCAGCCAAACTGACTGTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAAGTACAGAATACT....................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATAGTTTCAGAGCTGAGA..........................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................GTCGAGTCCTCAGCCAAACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................AAAACAAAAACAAAACAAACAAAAAAA..................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGACGCAACGAATCCCCAA...........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGAGAATACTGAGAAGTACAGA.........................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................TAAGCGAACCGTGTTCAACA.............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................AAACCAAACGTAAGCGAACC.......................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................AACCAAACGTAAGCGAACCGTG....................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................A----AACCGAAA-CCAGAGTTCGACAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAT----------------AACTGACGCAACGAATCCCC.............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................AAACCAAACGTAAGCGAACCGTGTTCA................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATACTGAAACGAAT----------------A................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAACGAAT----------------AACTGACGCAACGAATC................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................AAGCGAACCGTGTTCAACAAA...........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................AAACGTAAGCGAACCGTGTTCA................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................TAAGCGAACCGTGTTCAACAAAAAC........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AACTCCAAAGAATGCTCAAAAC-.....................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..........ACCGGCCAGGTCGAGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................ACGTAAGCGAACCGTGTTCAACA.............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAAGTACAGAATACTGAAAA...............................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGCTGAGAATACTGAGA.................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........CACCGGCCAGGTCGAGTCCTCAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GACCTCGTCCACCGGCCAGGTCGAGTCCTCAGCCAAACTGACTGTTAAAAGTAAGGATTAAACATAAAAACTAAGCCA------------A----AACCGAAA-CCAGAGTTCGACAAAAATA-CCAAGCAAACACA--AAACCAAACGTAAGCGAACCGTGTTCAACAAAAACAAAAACAAAACAAAA--AAAAAA-----C---CATCAACAACCAACAGAAAA-AAAAATCAACTCCAAAGAATGCTCAAAAC-A-------ATACT----------------------------------------------------------------------------------------------------------------------------------GAAAAAATACTAGAAAATACTGAAAAATAGTTTCAGAGCTGAGAATACTT-CAAGTACAGAATACTGAAAAATACTGAAACGAAT----------------AACTGACGCAACGAATCCCCAAAAAAGC-----	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................................................................AAAAA-----C---CATCAACAACCAACAGAAA.....................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................AACGTAAGCGAACCGTGTTCA................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................CA--AAACCAAACGTAAGCGAACC.......................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGAAT----------------AACTGACGCAACG....................	22	1	1.00	1	0	1	0	0	0	0
...........................................GTTAAAAGTAAGGATTAAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droWil2

AACTTCCTCAACAGGACAAGTCGAGTCATCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAAGTAACATCTAAGCAAATGCAAAAAACAAAACAAACCAAAA-CCAGAGTTCGAA------A-CAAAGT------A---AACCAAACGTAAGCGAAC----------------------------------------------------------------------------AACTCCAAAGAATGCTCAAAA-----------------------------------------------------------------------------------------ACAACGACCA--------------ACAAC-----------------AC-CAATAAAATATATATAT--TTATATACTTAAATATAAATGCATATATATTTATA-------------------------------------TAAACAACAACAACAAAAACTGACGCAACGAATCCTAA-AAGATA-----	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................AACCAAAA-CCAGAGTTCGAA------A-CA........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	2	1	0
...................................................................................................AAAA-CCAGAGTTCGAA------A-CAAAGT------A---AACC......................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	1	1	0
..........................................................................................................................A-CAAAGT------A---AACCAAACGTAAGCGAAC----------------------------------------------------------------------------A...........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.............GGACAAGTCGAGTCATCAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
........CAACAGGACAAGTCGAGTCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
....................................................................................................AAA-CCAGAGTTCGAA------A-CA........................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
........CAACAGGACAAGTCGAGTCATCAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAAAACTGACGCAACGA...................	22	1	1.00	1	0	1	0	0	0
.................................................AGTAAGGATTAAAAGTAACATCTAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................................................AACTCCAAAGAATGCTCAAA........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAAAAACTGACGCAACGA...................	26	1	1.00	1	0	0	0	1	0
...............................................................................................AACCAAAA-CCAGAGTTCGAA------A-C.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAAAAACTGACGCAACG....................	24	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAAAAACTGACGCAACGA...................	23	1	1.00	1	0	0	1	0	0
................................................................................................................................................AAACGTAAGCGAAC----------------------------------------------------------------------------AACTCCAAAG..................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
..........................................................................................................AGAGTTCGAA------A-CAAAGT------A---AACCA.....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..............................AGCCAAACTGACTGTTAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
.................................................................................................................................................AACGTAAGCGAAC----------------------------------------------------------------------------AACTCC......................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.....................................................................................................AA-CCAGAGTTCGAA------A-CAAAGT------..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.................................................................................................................................T------A---AACCAAACGTAAGCGAAC----------------------------------------------------------------------------A...........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...........................................................................................AACAAACCAAAA-CCAGAGTTCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
........................GTCATCAGCCAAACTGACTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
.......................AGTCATCAGCCAAACTGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
...........................................GTTAAAAGTAAGGATTAAAAGTAACAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.....................................................................................................AA-CCAGAGTTCGAA------A-CAAAGT------A---AACC......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
...............................................................GTAACATCTAAGCAAATGCAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0

droVir3

GACTTCGTCAACTGGACAGGTCGAGTCATCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAAAAACTTAGCAA-----------------AACCAAAA-CCAGAGTTCGTA------A-AC-AGC------AAGAAAACAAACGTAAGCGAACAGTGTTCGAA------------------------------------------------------------------AACTCCAAAGAATGCTCAAAAA-AC-------------------------------------------------------------------------------------ATAACGACCAAAAA--------CGAAAGG-AATTATTCATAT--------------------------------------------------------------------------------------------------------------------AT---------TTATATATG----CATATCTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................AACGTAAGCGAACAGTGTTCGAA------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0
..........................................................................................................AGAGTTCGTA------A-AC-AGC------AAGAAAACA.....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................AACGTAAGCGAACAGTGTTCG................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................AAACGTAAGCGAACAGTGTT..................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CAACTGGACAGGTCGAGTCATCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................GACTGTTAAAAGTAAGGATTAAAC-T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................CGAA------------------------------------------------------------------AACTCCAAAGAATGCTCA..........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................A-CCAGAGTTCGTA------A-AC-AGC------AAG...........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................AAAA--------CGAAAGG-AATTATTCATA.....................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................AAAAACTTAGCAA-----------------AACCAAAA-CCAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TGGACAGGTCGAGTCATCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................AAA--------CGAAAGG-AATTATTCATA.....................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................CGAA------------------------------------------------------------------AACTCCAAAGAATGCT............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................AAAA--------CGAAAGG-AATTATTCAT......................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TCGTA------A-AC-AGC------AAGAAAACA.....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AAACAAACGTAAGCGAACAGTGTT..................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ACTTCGTCAACTGGACAGGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AACTGGACAGGTCGAGTCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................A-CCAGAGTTCGTA------A-AC-AGC------AAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.....................................CTGACTGTTAAAAGTAAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................AAAACAAACGTAAGCGAACAG......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................AGCGAACAGTGTTCGAA------------------------------------------------------------------AACTC.......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GACCAAAAA--------CGAAAGG-AATTATTCAT......................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CAACTGGACAGGTCGAGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................AAGCGAACAGTGTTCGAA------------------------------------------------------------------AACTCCA.....................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................AA-CCAGAGTTCGTA------A-AC-AGC------AAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........CAACTGGACAGGTCGAGTCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GACCAAAAA--------CGAAAGG-AATTATTCA.......................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................AAAGTAAGGATTAAAC-TAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TAAAAACTTAGCAA-----------------AACCAAAA-CCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................AAA-CCAGAGTTCGTA------A-AC-AGC------AAG...........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................AAAA--------CGAAAGG-AATTATTC........................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ACTGGACAGGTCGAGTCATCAGCCAAACTGACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	33	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CGACCAAAAA--------CGAAAGG-AAT.............................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................GAA------------------------------------------------------------------AACTCCAAAGAATGCTCAAA........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................AACGTAAGCGAACAGTGTTCGA...............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......TCAACTGGACAGGTCGAGTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................AAA-CCAGAGTTCGTA------A-AC-AGC------AAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................AA-----------------AACCAAAA-CCAGAGTTCGTA------A-AC-AGC------..............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ACTGGACAGGTCGAGTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTCATCAGCCAAACTGACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ACTGGACAGGTCGAGTCATCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................GC------AAGAAAACAAACGTAAGC............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ACTGGACAGGTCGAGTCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TCAGCCAAACTGACTGTTAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................GTAAGCGAACAGTGTTCGAA------------------------------------------------------------------AACTCC......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GACCTCGTCAACTGGACAGGTCGAGTCATCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAAACGCTAAGCCA-----------------AACCAAAA-CCAGAGTTCGTA------A-AC-AGC------AAGAAATCAAACGTAAGCGAACAGTGTTCGAA------------------------------------------------------------------ATCTCCAAAGAATGCTCAAAAG-AAAAAAAA----------------AAAAAAAGAACAAC-A-------CAC-----------A-CAC---------------------ATAACGACCAAA------------AAAAG-AACCTTAAGAAC-------------------------------------------------------------------------------------------------------------------------------T-ATACGTA----TAT-----	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................AGAGTTCGTA------A-AC-AGC------AAGAAATCA.....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................AAA----------------AAAAAAAGAACAAC-A-------CAC-----------A-CAC---------------------A.............................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....TCGTCAACTGGACAGGTCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............GACAGGTCGAGTCATCAGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................AAGCCA-----------------AACCAAAA-CCAGAGTTCGTA------A-..........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................AACGTAAGCGAACAGTGTTCGAA------------------------------------------------------------------A...........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0
...................................................................................................AAAA-CCAGAGTTCGTA------A-AC-A......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..................GGTCGAGTCATCAGCCAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................AACCTTAAGAAC-------------------------------------------------------------------------------------------------------------------------------T-ATACGT.............	19	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................CGTAAGCGAACAGTGTTCGAA------------------------------------------------------------------ATCTC.......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................A----------------AAAAAAAGAACAAC-A-------CAC-----------A-CAC---------------------A.............................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................................AGCCA-----------------AACCAAAA-CCAGAGTTCGTA------A-AC-.......................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
....................................................................................................AAA-CCAGAGTTCGTA------A-AC-AGC------A.............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................AAAAGAACAAC-A-------CAC-----------A-CAC---------------------ATAACG........................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......TCAACTGGACAGGTCGAGTCATCAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0
.............GGACAGGTCGAGTCATCAGCCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..............................................................C-TAAACGCTAAGCCA-----------------AACCAAAA-CC............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
..............GACAGGTCGAGTCATCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................GTAAGCGAACAGTGTTCGAA------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................AA-CCAGAGTTCGTA------A-AC-AGC------A.............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................CAAA------------AAAAG-AACCTTAAGA......................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................ACGTAAGCGAACAGTGTTCGAA------------------------------------------------------------------A...........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
........................................................................AAGCCA-----------------AACCAAAA-CCAGAGTTCGTA------A-AC-.......................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................A----------------AAAAAAAGAACAAC-A-------CAC-----------A-......................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	1	0

droGri2

GACTTCGTCTACGGGACAGGTCGAGGCATCAGCCAAACTGACTGTTAAAAGTAAGGATTAAAC-TAAAAACTAAGCAA-----------------AACCAAAA-CCAGAGTTCGTA------A-ACAACA-------AGAAAAGAAACGTAAGCGAACAGTGTTCGAA------------------------------------------------------------------AACTCCAAAGAATGCTCAAAAA-AC-------------------------------------------------------------------------------------ACAACGACCAAAAACCGATAAACAAAAAA-AAATATTTATAT-------------------------------------------------------------------------------------------------------------------------------ATAT-----------T-----	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................................................................AAAA-CCAGAGTTCGTA------A-ACA.......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1

dsi_18620

3l:1993940-1994089 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-4.8	-4.7	-4.7