ID:

dsi_1862

 Coordinate:

3l:8196661-8196810 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-26.0 -26.0 -26.0

Flybase annnotation

five_prime_UTR [3l_8196788_8197280_+]; exon [3l_8196788_8197548_+]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
mature
  1. 2l:19591197-19591212 +
  2. 2r:2558652-2558667 +
  3. 2r:9016915-9016930 +
  4. 2r:17681640-17681655 -
  5. dsi_1862  3l:8196779-8196794 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#########################################################################
GACAATAATACGCCAATGAATCTAAAATCACTGCAATAATCATAAAAAAGGTATGTGTCAATCAAAAGTTTTTAATTAGTTGTCGCGAATTCTTAACTTATGTAAATACATAAGTCTTTCTTACTTAGCTTACAAAATACAAGTTCATTTGTTGTTTTACTAGTAGAGTAAAGGGTATGCTAGACTTGTTGAACAGAATGTAACAGGAAACGCAACTGTTACTCACACACATTTGAATATTGTTTTGATT
**************************************************....................((((((.((((...(((.(((((..((((((((....)))))))).....((((((.(((...((((((((((....)))).))))))...))).))))))))))).)))..)))).)))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body
................................................................................................................AGTCTTTCTTGCTTAGCTTA...................................................................................................................... 20 1 1 1.00 1 1 0 0 0
........................................................................................................................................................................TAAAGGGTATGCTAGA.................................................................. 16 0 5 0.40 2 1 1 0 0
.......................................................................................................................................................................................................GTATCAGGAGACGCAACTC................................ 19 3 15 0.13 2 0 0 0 2
.................................................................................GCCGCGAATTCTGAACT........................................................................................................................................................ 17 2 16 0.13 2 0 0 2 0
...................................................................................................................................................TTTGTTGATTTACTTGTAGTGT................................................................................. 22 3 8 0.13 1 0 1 0 0
..............................................................................TTTGTCGCGAAGTCTTAAA......................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0

Anti-sense strand reads

CTGTTATTATGCGGTTACTTAGATTTTAGTGACGTTATTAGTATTTTTTCCATACACAGTTAGTTTTCAAAAATTAATCAACAGCGCTTAAGAATTGAATACATTTATGTATTCAGAAAGAATGAATCGAATGTTTTATGTTCAAGTAAACAACAAAATGATCATCTCATTTCCCATACGATCTGAACAACTTGTCTTACATTGTCCTTTGCGTTGACAATGAGTGTGTGTAAACTTATAACAAAACTAA
**************************************************....................((((((.((((...(((.(((((..((((((((....)))))))).....((((((.(((...((((((((((....)))).))))))...))).))))))))))).)))..)))).)))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
...............................................................................AACAGCGCTTGAGGATTGAAT...................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0
..............................................................................................................................................CAAGTAAACAACAAAATGATCATCT................................................................................... 25 0 1 1.00 1 0 1 0 0
......................................................................................................................................CTTATGCTGAAGTAAACAACA............................................................................................... 21 3 9 0.11 1 0 0 1 0
..............................................................................................................................TCGAATGTTTTAGGTCCTA......................................................................................................... 19 3 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 10:48 AM