ID:

dsi_18593

 Coordinate:

3r:19678164-19678313 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.0 -30.8

Flybase annnotation

exon [3r_19678104_19678163_+]; CDS [3r_19678104_19678163_+]; intron [3r_19678164_19678755_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAGTTGGTGAGTGTTTTCATAATTAATCAATTAGCTTTTCAAAGTTATCGTTTAATGCCTTTTGATCGGCATTTAAGTCTTGCGTAAGTGTGTGTCTGCTGCGGCATTTTCCGTCTCTGTCGTTCGCGCGCCTTTGTGACGTCATCGTGTGAGGGAATAGAGAAAAAAGTTGCCCATCCAATTAAGTTGTTAATTAAAAAAAAACA
**************************************************(((((....)))))...........((((((....)))))).((...((((((....(((..(((((((.((...)).)))))))..)))......))))))...))......((.((((((((.....(((....))))))))))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M025
embryo
 M053
female body
 O001
Testis
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
..................................................................................................ATGCCTTTTGAGCGTCATTT.................................................................................................................................... 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CCGTCTCTGTCGTTCGCGCGCC.......................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................AAACGAGCATGAGCAGACCTTTG................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..................GAAACGAGCATGAGCAGACCT................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTCCGTCTCTGTCGTTCGCGC............................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................GTCATCGTGTGATGGA.................................................. 16 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGTGACGTCATCGTGTGA...................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....TCTCGATTGGCAGGGAAA.................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................CATGAGCAGACCTTTGAGGAGTTG........................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.TCGTCTCGATTGGCAGGGAAAC................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................TAAGTTGGTAATCAAAAAAAAA.. 22 2 3 0.67 2 0 0 0 2 0 0 0 0 0 0 0 0
...................................................................................................TGCCTTTTGAGCGTCATTT.................................................................................................................................... 19 2 3 0.67 2 0 0 0 1 0 0 0 0 0 1 0 0
.........................................GTAGAGTTGGTGAGTGTT............................................................................................................................................................................................... 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................ATGCCTGTTGAGCGTCATTT.................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TGCCTTTCGATCGTCATT..................................................................................................................................... 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TAAGTTGGTAATCAAAAAAAAAAA 24 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................CATGTTGTTAATTAAAAAAA.... 20 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AGTCGTCAATTAAAAAAAA... 19 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................GTGCAGACCTTGGAGGA............................................................................................................................................................................................................ 17 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................AGTAGACCCTTGAGGA............................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TGTAGTTCGCGCGCCA......................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................CCCTTGAGGACTTAGTGA.................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AATTAAGTTGTTTATAAAAA....... 20 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................AGGAGTAGGCCAGTGTTTT............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CAGCAGAGCTAACCGTCCCTTTGCTCGTACTCGTCTGGAAACTCCTCAACCACTCACAAAAGTATTAATTAGTTAATCGAAAAGTTTCAATAGCAAATTACGGAAAACTAGCCGTAAATTCAGAACGCATTCACACACAGACGACGCCGTAAAAGGCAGAGACAGCAAGCGCGCGGAAACACTGCAGTAGCACACTCCCTTATCTCTTTTTTCAACGGGTAGGTTAATTCAACAATTAATTTTTTTTTGT
**************************************************(((((....)))))...........((((((....)))))).((...((((((....(((..(((((((.((...)).)))))))..)))......))))))...))......((.((((((((.....(((....))))))))))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
............................................................................TCGAAAAGTTTCAATAGCAAA......................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0
.................................................................................AAGTTTCAAGAGCAAACT....................................................................................................................................................... 18 2 19 1.32 25 0 0 24 0 0 1 0
...............TCCCTTTGCTCGTACTCGTCT...................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................TAAAAGGCAGAGACAGCA................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................ACTCCCTTATCTCTTTTTTCA.................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TCAACGGGTAGGTTAATTCAAC................. 22 0 1 1.00 1 1 0 0 0 0 0 0
...............CCCCTTTGCTCGTACTCGTCT...................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
............CGGTCCCTTTGCTGGTAC............................................................................................................................................................................................................................ 18 2 9 0.67 6 3 3 0 0 0 0 0
...............TCCCTTTGCTGGTACTCAAC....................................................................................................................................................................................................................... 20 3 7 0.57 4 0 4 0 0 0 0 0
....................................................................................................................................ACCCACAGACGAAGCCGTAA.................................................................................................. 20 2 2 0.50 1 0 0 0 1 0 0 0
..............................................................................................TAATTACGGAAAACTAGCAGT....................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0
..........................................................AAAATATTAAGTAGGTAATCGAAA........................................................................................................................................................................ 24 3 3 0.33 1 0 0 0 1 0 0 0
..............GTCCCTTTGCTGGTACTCAAC....................................................................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................CTGCAGTAGCACAAGCCCT.................................................. 19 2 3 0.33 1 0 0 0 0 1 0 0
..................................................................................AGTTTCAATAGCAAAC........................................................................................................................................................ 16 1 5 0.20 1 0 0 1 0 0 0 0
............CAGTCCCTTTGCTGGTAC............................................................................................................................................................................................................................ 18 2 5 0.20 1 0 1 0 0 0 0 0
..................................................................................AGTTTCAAGAGCAAAT........................................................................................................................................................ 16 1 7 0.14 1 0 0 0 0 0 1 0
.............................................................................................................AGCTGCAAATTCGGAACGC.......................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 1
.............................................................................................................AGCTGTAAATTCGGCACGC.......................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 1
...............................................................................AGAAGTTTCAAGAGCAAACT....................................................................................................................................................... 20 3 19 0.05 1 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:19678114-19678363 + dsi_18593 GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAGTTGGTGAGTGTTTTCATAAT-TAATCAATT--AG---CTTTTCAAAGT----TATCGTTTAATGC--CTT---------------T--TGATCG---G-CATTTAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGC---TGC-GGC------ATTTTCC-------GT----CTCTGTCGTTCGC------------GCGCCTTTGTGACGTCATC---G--------------TGTGA------GGGAATAGAGAAAA----------------------AAGTTGCCCATCCAA--TT-AAGTTGTT-----------AATTA---AA--A-AAAAACA
droSec2 scaffold_0:20484293-20484541 + GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAATTGGTGAGTGTTTTCATAAT-TAATCAATT--AG---CTTTTCAAAGT----TATCGTTTAATGC--CTT---------------T--TGATCG---G-CATTTAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGC---TGC-GGC------ATTTTCC-------GT----CTCTGTCGTTCGC------------GCGCCTTTGTGACGTCATC---G--------------TGTGA------GGGAATAGAGAAAA----------------------AAGTTGCCCATCCAA--TT-AAGTTGTT-----------AATTA---AA----AAAAACA
dm3 chr3R:20145749-20145997 + GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAATTGGTGAGTGTTTTCATAAT-TAATCAATT--AG---CTTTTCAAAGT----TATCGTTTAATGC--CTT---------------T--TGATCG---G-CATTTAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------CG----TCTGC---TGC-GGC------ATTTTCC-------GT----CTCAGTCGTTCGC------------TCGCCTTTGTGACGTCATC---G--------------TGTCA------GGGAATAGAGAAA-----------------------AAGTTGCACATCAAAA-TTCAAGTTGTT-----------AATTT---A-----AAAAACA
droEre2 scaffold_4820:7914737-7914986 - GTCGCCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAAGAATTGGTGAGTGTTTTCATAAT-TAATCAATT--AG---CTTTACACAGT----TATCGTTTAATTA--CTT---------------T--TGATCG---G-CATTTAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGC---TGC-GGC------ATATTCC-------AT----CTCTGTCGTGCGT------------GCGCCTTTGTGACGTCATT---G--------------GGTGA------GGGGATAGAGACAA----------------------AAGTTGCATATCAAAA-TT-AAGTTGTT-----------AATTA---AA----GAAAACA
droYak3 3R:26359689-26359938 - GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAATTGGTGAGTGTTTTCATAAT-TAATCAATT--AG---CTTTTCAAAGT----TATCGTTTAATGC--CTT---------------T--TGATCG---G-CATTTAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGC---TGC-GGC------ATTTTCC-------AT----CTCTGTCGTGCGG------------GCCCCTTTGTGACGTCATC---G--------------GGTGA------GGGGATAGAGACAA----------------------AAGTTGCACATCAAAA-TT-GAGTTGTT-----------AATTA---AA----AAAAACA
droEug1 scf7180000409798:234919-235167 - GTCGGCTCGATTGGCAGGGAAATGAGCATGAACAAACCTTTGAGGAATTGGTGAGTGCTTTCATAAT-TAATCAATT--AG---TTTT-TAAACG----TATCGTTTAATGC--CTT---------------T--TGATCG---G-CGTACAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGC---TAT-AGC------ATTTTCC-------TT----CTCTTTCTTGCGT------------GCGCCTTTGTGACGTCATC---G--------------ACTGA-----CGGGAATAGAGAAAA----------------------AAGTTGACAATAAAAA-AT--AGTTTT---------TGC--TTA---GT----AAAAACA
droBia1 scf7180000302136:507105-507355 + GTCGTCTCGATTGGCTGGGGAACGAGCATGAACAGACCTTTGAGGAACTGGTGAGTGTTTTCATAAT-TAATCAATT--AG---GCTTTTAAAGT----TATCGTCAAATGC--CTT---------------T--TGATCG---G-CC-TTAAGTGTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGCC--TCT-CGC------ACTCGCC-------CT--CTCTCTTTCCTGCAT------------GCGCCTTTGTGACGTCATC---G------------------C------GGGGATAGAGAAAA----------------------AAGTTGCCTGTAAAAA-TT--AGTTTTT--------T-C--TT--TAAAAAG-TAAAACA
droTak1 scf7180000415769:2286207-2286463 - GTCGCCTCGATTGGCAGGGAAACGAGCATGAACAGACCTTTGAGGAACTGGTGAGTGTTTTCATAAT-TAATCAATT--AG---GCGTTTTAAGT----TATCGTTTAAATCGCCTT---------------T--TGATCG---G-CGCATAAGTGTTGCGTAAG------------------------------------------------------------------TGTG--------TGTGTGTCTGC---TTCTCGC------ATCT-CC-------CT----CTCTTTCCTTCAT------------GCGCCTTTGTGACGTCATC---G------------------A------GGGGATAGAGAAAA----------------------ATGTTGACCGTAAAAAATT--AGTGTTT--------TGC--T--TA-AAAAGAAAAAACA
droEle1 scf7180000491008:457944-458197 + GTCGCCTCGACTGGCAGGGAAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTGTTTCTATAATTTGATTAATT--AG---CGTT-TAAAGT----TATCGTTTAATTC--CTT---------------TTCTGATCG---G-CG--TAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGC---T---TGC------ATTTTCT-------GT----CTCTTTCGTGCGT------------GCGCCTCTGTGACGTCATCCACG--------------ACTGA------GGGGATAGAGAAAA---------A------------AAGTTGAACATCAAAAATT--AGTAACT--------TGC--T--TTAAA----AACAACA
droRho1 scf7180000779477:248827-249070 + GTCGCCTCGACTGGCAGGGAAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTGTTTCTATAATTTGATTAATT--AA---CGTTTTAAAGG----TATCGTTTAATCC--CCT---------------TTCTGATCG---G-GG--TAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGC---T---AGC------ATTTTCC-------GT----CTCTTTCGTGCGT------------GCGCCCC--TGACGTCATT---G-------------------------GGGGATAGAGAAAA---------A------------AAGTTGACCATAAAAA-TT--AGTTACT--------AGC--T--TTAAA----AAAAGCA
droFic1 scf7180000453912:1320403-1320660 + GTCGCCTCGATTGGCAGGGAAACGAGCATGCACAGACCTTTGAGGAATTGGTAAGTCTTTTTGCAAT-TAGTCAATT--AA---CTAGTTAAAGT----TATCGTTTGATGC--CTT---------------T--TGATCG---G-CA--CAAGTCTTGCATAAGTGTAAT---------------------------------------------------------------G--------TGTTTGTGTGCTGCT---TGG------TTCTTCC-------GT----CTCGTTCGTGTTT------------GCGCCTTTGTGACGTCACC---G--------------GGTCA------GGGGATAGAGAAAA----------------------AAGTTGCTCGTCAAAAATT--AGTTATT--------TGC--T--TTTAC----AAAAACA
droKik1 scf7180000302387:35570-35821 + GTCGCATTGATTGGCTGGGGAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTATTGCC--AAT-TGCCTAATT--AA---CAAC-TAATG------GCCGCATAACGC--CAT-----TTGAATTTGTT--TGATCG---T-CGTCCGA-CATTGCGTAAG------------------------------------------------------------------TGTG--------TG----CGCGT---------T------TCTTTTC-------CT----CTTTGTCGTGCGT------------GTGCC--TGTGACGTCATG---G---------------GCTA------GGGGATAGAGAAAA---------A------------ACATAGCGCATGCCAA-TT--TCTTTTTAAACTTTTTGC--C------C----TAAAACA
droAna3 scaffold_13088:184650-184924 + GACGCATCGACTGGCAGGGGAATGAGCATGAGCAGACCTTTTCTGAATTGGTGAGTGATAT---AAA-TAATAATTTCTAT---CAATTGTTTTT----TGT--TTTAATAA--TTT---------------G--GCAT-AGCGGGAG--GGAGTCTTGCATAAG------------------------------------------------------------------TGTT--------TT--------C---TTT-TTT------ATTTTTTTTTTTTGATATTTTTTC-GTGTGCGT------------GCGCCTTTGTGACGTCACG----TCGGAA---CATCGATTGA-------TGAATAGAGAAAATGGCAGGGAAACGCAGGCGTG------GGAAAATGAAT-------TTATT-----TTTTGCA--------A----ATAGACA
droBip1 scf7180000396413:238905-239169 + GACGCATCGACTGGCAGGGAAATGAGCATGAACAGACCTTCTCCGAATTGGTGAGTGAT---ATAGT-TAATTATTTGTAG---CATTTTAATTT----TAT--TTTAATAA--TTT---------------T--TCAA-A---G-CG--GGGGTCTTGCATAAG------------------------------------------------------------------TCTT--------TT----TT--T---TGT-TG---------------------ATATTTTTTC-GTGTGCGT------------GCGCCTTTGTGACGTCACT----ACGAAG---CATCGATTGA-------CGAATAGAGAAAATAGCAGGGAAACGCACGCGTG------GGAAAATAAAT-TT--ATTTTTT--------TGCATTTA---GA--C-AATAAAA
dp5 2:18667260-18667529 - dps_651 GACGCATTGACTGGCTGGGAAATGAGCATCAGCAGACCTTTGCCGAATTGGTGAGTGTTTTA------------ATT--GG---TTTC-TA--GTTTCATTTCCTTGCATTT--TCT---------------TTGTGTGTG---G-TG--CGTGTCTTGCATAAG------------------------------------------------------------------TGGGAAAACTTCTT----TCGCT---TGT-CGC------GCTTCCT-------CT----CTCT-TTGTGCGT------------GCCTTTTTGTGACGTCACG----C--GCA---AATCGATTGATTTAGCGGCGACACCGTAGA---------AGTGCACGCGTGTGT----GTAAATTAAT-------TTGT---------GGCAAATCTTAAA----ATAAAAA
droPer2 scaffold_3:1397450-1397706 - GACGCATTGACTGGCTGGGAAATGAGCATCAGCAGACCTTTGCCGAATTGGTGAGTGTTTTA------------ATT--GG---TTTC-TA--GTTTCATTTCCTTGCATTT--TCT---------------TTGTGTGTG---G-TG--CGTGTCTTGCATAAG------------------------------------------------------------------TGGGAAAACTTCTT----TCGCT---TGT-CGC------GCTTCCT-------CT----CTCT-TTGTGCGT------------GCCTTTTTGTGACGTCACG----C--GCA---AATCGATTGATTTAGCGGCGACACCGTAGA---------A-TGCACGCGTGTGT----GTAAATTAAT-------TTGT------------------------G-GAAAATC
droWil2 scf2_1100000004943:7153376-7153628 - dwi_3330 GACGCATTGACTGGCTGGGAAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTTATTTTTTACA-AAATA--------------------------TTTC-----------TTA---------------T--GAATTT---G-CATTTGTGGCTTGCATAAG------------------------------------------------------------------TGATGATA----CG----TTTGC---CTT-TGT------CTTTTCGTGAGTCGCTCTCTTTCT-GTGTGCGCGCGTGTGTGTGTATGTGTTTGTGACGTCACT----T--GTAGGTCATCGATTGA------TT------------------------------------GTCAATCATAAGACAAT-ATGTAATTAATTAAATTG----------T--G-TAAAACA
droVir3 scaffold_13047:3476352-3476619 + dvi_15406 GGCGCATTGACTGGCTGGGCAATGAACATGAGCAGACCTTTGCCGAATTGGTGAGTGATTG--TTAT--GAT---TT--AG---TGTC-TA----TTTATTTCT----------GTAGTGATTTGT----------------------------GCTTGCATAATTGAAATTTGTTTTAAGATTTCACGCCTTTGTTT------TCGATTTTTTTTTTGTGCCTGTGTGTGTGTG--------TG----TG---------------------------------------------CGTGCGT----------GTGCGCTTTTGTGACGTCACA----T--AGC---CATCGATTGA----------TTGAAGACAT----------------------GTGTTAAACATTTAAT--------TTTT--------TGCAATTA---AT--G-AAAATTA
droMoj3 scaffold_6540:20487573-20487845 + GACGCATTGACTGGCTGGGCAATGAGCATGAACAGACATTTGCTGAATTGGTGAGTTATTG--TTGT--GATTTATT--TG---TGTT-TAATT------GTC---AAAT----TTTGTTATATGT----------------------------GCTTGCATAATTGAAATTAGTGTTCAGACTTTACGTCTTCGCTTTTTTGTTCGACTATT-----G-----GCGTTTGTGTG--------TG----TTT---------------------------------------------GTGCGT----------ATGCGC-TTTGTGACGTCACA----T--GGC---CATCGATTGA------TTGAATAGACACTT----------------------GTGTTATACTATTAAT-TT-TTTT------------TGCAAATA---AT--G-GAAATTA
droGri2 scaffold_14906:134964-135223 + GGCGCATCGACTGGCTGGGAAATGAGCATGACCAGACCTTTGCAGAATTGGTGAGTTATTA--TTAT--GATCTATT--ATGTGCAATGATTATT----TGA--TATGTTAA--GTTGTGATTTCT----------------------------GCTTGCATAATTGACATTTG---------------------------------------------------------TGTG--------------TGTGCA--GAT-TGTGCTCGCGTTTGCT-------TT----GTG---CGTGCGT----------GTGCGCTTTTGTGACGTCACA----T--GGC---CATCGATTGA------TTGAATAGACACTT--------------------GTATGTTGTACAATTAAT-------TTGTT--------TGTAATTA---AT------TAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAGTTGGTGAGTGTTTTCATAAT-TAATCAATT--AG---CTTTTCAAAGT----TATCGTTTAATGC--CTT---------------T--TGATCG---G-CATTTAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGC---TGC-GGC------ATTTTCC-------GT----CTCTGTCGTTCGC------------GCGCCTTTGTGACGTCATC---G--------------TGTGA------GGGAATAGAGAAAA----------------------AAGTTGCCCATCCAA--TT-AAGTTGTT-----------AATTA---AA--A-AAAAACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................CC-------GT----CTCTGTCGTTCGC------------GCGCC...........................................................................................................................................2211.00110000000000000000
...................AAACGAGCATGAGCAGACCTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
..................GAAACGAGCATGAGCAGACCT....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.................................................................................................................................................................................................................................................................................TTCC-------GT----CTCTGTCGTTCGC------------GC..............................................................................................................................................2111.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................TGTGACGTCATC---G--------------TGTGA------................................................................................................1811.00100000000001000000
....TCTCGATTGGCAGGGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
..........................CATGAGCAGACCTTTGAGGAGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.TCGTCTCGATTGGCAGGGAAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000100000000000
droSec2
GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAATTGGTGAGTGTTTTCATAAT-TAATCAATT--AG---CTTTTCAAAGT----TATCGTTTAATGC--CTT---------------T--TGATCG---G-CATTTAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGC---TGC-GGC------ATTTTCC-------GT----CTCTGTCGTTCGC------------GCGCCTTTGTGACGTCATC---G--------------TGTGA------GGGAATAGAGAAAA----------------------AAGTTGCCCATCCAA--TT-AAGTTGTT-----------AATTA---AA----AAAAACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................CAGACCTTTGAGGAATTGGTGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001
.......................GAGCATGAGCAGACCTTTGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.......................................................................................................................................................AAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGC---..........................................................................................................................................................................................................2511.0010100
...........................ATGAGCAGACCTTTGAGGAATTGGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
..................................................................................................................................................................................................................................................................................TCC-------GT----CTCTGTCGTTCGC------------GCG.............................................................................................................................................2111.0011000
..........................................AGGAATTGGTGAGTGTTTTCA............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.........................GCATGAGCAGACCTTTGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
dm3
GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAATTGGTGAGTGTTTTCATAAT-TAATCAATT--AG---CTTTTCAAAGT----TATCGTTTAATGC--CTT---------------T--TGATCG---G-CATTTAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------CG----TCTGC---TGC-GGC------ATTTTCC-------GT----CTCAGTCGTTCGC------------TCGCCTTTGTGACGTCATC---G--------------TGTCA------GGGAATAGAGAAA-----------------------AAGTTGCACATCAAAA-TTCAAGTTGTT-----------AATTT---A-----AAAAACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................TGAGCAGACCTTTGAGGAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000
.............................................................................................................................................................................................................................................................................................T----CTCAGTCGTTCGC------------TCGCCTA.........................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................GCGTAAG------------------------------------------------------------------TGTG--------CG----TCTGC---TGC-......................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TAAG------------------------------------------------------------------TGTG--------CG----TCTGC---TGC-GGC------A............................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................AAG------------------------------------------------------------------TGTG--------CG----TCTGC---TGC-GGC------C............................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGCATGAGCAGACCTTTGAGGAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................T----CTCAGTCGTTCGC------------TCGCCT..........................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................T----CTCAGTCGTTCGC------------TCGCCTT.........................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000000000000000000
.TCGTCTCGATTGGCAGGGAAACGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCGTCTCGATTGGCAGGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
...........................ATGAGCAGACCTTTGAGGAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................GGGAAACGAGCATGAGCAGACCT....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................ATTTAAGTCTTGCGTAAG------------------------------------------------------------------TG..................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................GCATGAGCAGACCTTTGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................CATC---G--------------TGTCA------GGGAATAGAGAAA-----------------------AAGT........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................................................................................TGCGTAAG------------------------------------------------------------------TGTG--------CG----TCTGC---TG........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................................................................................................................................................................................................................................................CTTTGTGACGTCATC---G--------------TGTCA------................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GC------------TCGCCTTTGTGACGTC................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.............................................................................................................................................................................................................................................................................................................................GCCTTTGTGACGTCATC---G--------------TGTCA------GGGA............................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TCATC---G--------------TGTCA------GGGAATAGAG......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................C---G--------------TGTCA------GGGAATAGAGAAA-----------------------AAGTTG......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGAGCAGACCTTTGAGGAATTGGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TTGTGACGTCATC---G--------------TGTCA------GG..............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GGGAAACGAGCATGAGCAGACCTTTGA................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CATGAGCAGACCTTTGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.TCGTCTCGATTGGCAGGGAAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................GACGTCATC---G--------------TGTCA------GGGA............................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.....................................CTTTGAGGAATTGGTGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................GTTTAATGC--CTT---------------T--TGATCG---G-C........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................CGAGCATGAGCAGACCTTTGAGGAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................C------ATTTTCC-------GT----CTCAGTCGTTC..............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................T----CTCAGTCGTTCGC------------TCGCC...........................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.....................................CTTTGAGGAATTGGTGAGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................C------------TCGCCTTTGTGACGTCATC---G--------------TG.........................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
....................................................................................................................................................................................................................................................................................................................................TGACGTCATC---G--------------TGTCA------GGGAA...........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AGTCGTTCGC------------TCGCCTTTGTGACG..................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AGGAATTGGTGAGTGTTTTCA............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...................................................................................................................................................................................................................................................................................................TCAGTCGTTCGC------------TCGCCTAG........................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GGCAGGGAAACGAGCATGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAACGAGCATGAGCAGACCT....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GTTCGC------------TCGCCTTTGTGAC...................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CATGAGCAGACCTTTGAGGAATTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GTCGTCTCGATTGGCAGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.............................................................................................................................................................................................................................................................................................................................................C---G--------------TGTCA------GGGAATAGAGAAA-----------------------............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GTCGTCTCGATTGGCAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....TCTCGATTGGCAGGGAAACGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TCTCGATTGGCAGGGAAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGCATGAGCAGACCTTTGAGGAATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CA------GGGAATAGAGAAA-----------------------AAG.........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................TGAGGAATTGGTGAGTGTTTTC.............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
..............................................................................................................................................................................................................................................................................ATTTTCC-------GT----CTCAGTCGTTCGC------------................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACGAGCATGAGCAGACCTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................C------------TCGCCTTTGTGACGTCATC---..........................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TTTTCC-------GT----CTCAGTCGTTCGC------------................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................T---------------T--TGATCG---G-CATTTAAGTCTT.............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................GCCTTTGTGACGTCATC---G--------------TG.........................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
GTCGTCTCGATTGGCAGGGAAACGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TCAGTCGTTCGC------------TCGCCTTTGT......................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................C-GGC------ATTTTCC-------GT----CTCAGTCG.................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TGATCG---G-CATTTAAGTCTTGC...........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................A------GGGAATAGAGAAA-----------------------AAGT........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..................................................................................................................................................................AAG------------------------------------------------------------------TGTG--------CG----TCTGC---TGC-GGC------A............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TTGTGACGTCATC---G--------------TGTCA------GGGAA...........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...GTCTCGATTGGCAGGGAAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CCTTTGAGGAATTGGTGAGTGTT................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............CAGGGAAACGAGCATGAGCAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................T----CTCAGTCGTTCGC------------TCGCCTTT........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...........................ATGAGCAGACCTTTGAGGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ATGAGCAGACCTTTGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droEre2
GTCGCCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAAGAATTGGTGAGTGTTTTCATAAT-TAATCAATT--AG---CTTTACACAGT----TATCGTTTAATTA--CTT---------------T--TGATCG---G-CATTTAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGC---TGC-GGC------ATATTCC-------AT----CTCTGTCGTGCGT------------GCGCCTTTGTGACGTCATT---G--------------GGTGA------GGGGATAGAGACAA----------------------AAGTTGCATATCAAAA-TT-AAGTTGTT-----------AATTA---AA----GAAAACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....CTCGATTGGCAGGGAAACGAGCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
...............................................................................................................................................................................................................................................................................................................................CTTTGTGACGTCATT---G--------------GGTGA------GGGG............................................................................................2511.0010100000
...............................................................................................................................................................................................................................................................................................................................CTTTGTGACGTCATT---G--------------GGTGA------GG..............................................................................................2311.0010001000
droYak3
GTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTGAGGAATTGGTGAGTGTTTTCATAAT-TAATCAATT--AG---CTTTTCAAAGT----TATCGTTTAATGC--CTT---------------T--TGATCG---G-CATTTAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGC---TGC-GGC------ATTTTCC-------AT----CTCTGTCGTGCGG------------GCCCCTTTGTGACGTCATC---G--------------GGTGA------GGGGATAGAGACAA----------------------AAGTTGCACATCAAAA-TT-GAGTTGTT-----------AATTA---AA----AAAAACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
GTCGTCTCGATTGGCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
................................................................................................................................................................................................................................................................................................................................TTTGTGACGTCATC---G--------------GGTGA------G...............................................................................................2111.00101000000000
GTCGTCTCGATTGGCAGGGAAACGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..................................GACCTTTGAGGAATTGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................1940.75300000000003
droEug1
GTCGGCTCGATTGGCAGGGAAATGAGCATGAACAAACCTTTGAGGAATTGGTGAGTGCTTTCATAAT-TAATCAATT--AG---TTTT-TAAACG----TATCGTTTAATGC--CTT---------------T--TGATCG---G-CGTACAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGC---TAT-AGC------ATTTTCC-------TT----CTCTTTCTTGCGT------------GCGCCTTTGTGACGTCATC---G--------------ACTGA-----CGGGAATAGAGAAAA----------------------AAGTTGACAATAAAAA-AT--AGTTTT---------TGC--TTA---GT----AAAAACASizeHit CountTotal NormTotal
No Reads
droBia1
GTCGTCTCGATTGGCTGGGGAACGAGCATGAACAGACCTTTGAGGAACTGGTGAGTGTTTTCATAAT-TAATCAATT--AG---GCTTTTAAAGT----TATCGTCAAATGC--CTT---------------T--TGATCG---G-CC-TTAAGTGTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGCC--TCT-CGC------ACTCGCC-------CT--CTCTCTTTCCTGCAT------------GCGCCTTTGTGACGTCATC---G------------------C------GGGGATAGAGAAAA----------------------AAGTTGCCTGTAAAAA-TT--AGTTTTT--------T-C--TT--TAAAAAG-TAAAACASizeHit CountTotal NormTotal
No Reads
droTak1
GTCGCCTCGATTGGCAGGGAAACGAGCATGAACAGACCTTTGAGGAACTGGTGAGTGTTTTCATAAT-TAATCAATT--AG---GCGTTTTAAGT----TATCGTTTAAATCGCCTT---------------T--TGATCG---G-CGCATAAGTGTTGCGTAAG------------------------------------------------------------------TGTG--------TGTGTGTCTGC---TTCTCGC------ATCT-CC-------CT----CTCTTTCCTTCAT------------GCGCCTTTGTGACGTCATC---G------------------A------GGGGATAGAGAAAA----------------------ATGTTGACCGTAAAAAATT--AGTGTTT--------TGC--T--TA-AAAAGAAAAAACASizeHit CountTotal NormTotal
No Reads
droEle1
GTCGCCTCGACTGGCAGGGAAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTGTTTCTATAATTTGATTAATT--AG---CGTT-TAAAGT----TATCGTTTAATTC--CTT---------------TTCTGATCG---G-CG--TAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGC---T---TGC------ATTTTCT-------GT----CTCTTTCGTGCGT------------GCGCCTCTGTGACGTCATCCACG--------------ACTGA------GGGGATAGAGAAAA---------A------------AAGTTGAACATCAAAAATT--AGTAACT--------TGC--T--TTAAA----AACAACASizeHit CountTotal NormTotal
No Reads
droRho1
GTCGCCTCGACTGGCAGGGAAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTGTTTCTATAATTTGATTAATT--AA---CGTTTTAAAGG----TATCGTTTAATCC--CCT---------------TTCTGATCG---G-GG--TAAGTCTTGCGTAAG------------------------------------------------------------------TGTG--------TG----TCTGC---T---AGC------ATTTTCC-------GT----CTCTTTCGTGCGT------------GCGCCCC--TGACGTCATT---G-------------------------GGGGATAGAGAAAA---------A------------AAGTTGACCATAAAAA-TT--AGTTACT--------AGC--T--TTAAA----AAAAGCASizeHit CountTotal NormTotal
No Reads
droFic1
GTCGCCTCGATTGGCAGGGAAACGAGCATGCACAGACCTTTGAGGAATTGGTAAGTCTTTTTGCAAT-TAGTCAATT--AA---CTAGTTAAAGT----TATCGTTTGATGC--CTT---------------T--TGATCG---G-CA--CAAGTCTTGCATAAGTGTAAT---------------------------------------------------------------G--------TGTTTGTGTGCTGCT---TGG------TTCTTCC-------GT----CTCGTTCGTGTTT------------GCGCCTTTGTGACGTCACC---G--------------GGTCA------GGGGATAGAGAAAA----------------------AAGTTGCTCGTCAAAAATT--AGTTATT--------TGC--T--TTTAC----AAAAACASizeHit CountTotal NormTotal
No Reads
droKik1
GTCGCATTGATTGGCTGGGGAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTATTGCC--AAT-TGCCTAATT--AA---CAAC-TAATG------GCCGCATAACGC--CAT-----TTGAATTTGTT--TGATCG---T-CGTCCGA-CATTGCGTAAG------------------------------------------------------------------TGTG--------TG----CGCGT---------T------TCTTTTC-------CT----CTTTGTCGTGCGT------------GTGCC--TGTGACGTCATG---G---------------GCTA------GGGGATAGAGAAAA---------A------------ACATAGCGCATGCCAA-TT--TCTTTTTAAACTTTTTGC--C------C----TAAAACASizeHit CountTotal NormTotal
No Reads
droAna3
GACGCATCGACTGGCAGGGGAATGAGCATGAGCAGACCTTTTCTGAATTGGTGAGTGATAT---AAA-TAATAATTTCTAT---CAATTGTTTTT----TGT--TTTAATAA--TTT---------------G--GCAT-AGCGGGAG--GGAGTCTTGCATAAG------------------------------------------------------------------TGTT--------TT--------C---TTT-TTT------ATTTTTTTTTTTTGATATTTTTTC-GTGTGCGT------------GCGCCTTTGTGACGTCACG----TCGGAA---CATCGATTGA-------TGAATAGAGAAAATGGCAGGGAAACGCAGGCGTG------GGAAAATGAAT-------TTATT-----TTTTGCA--------A----ATAGACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................GAATAGAGAAAATGGCAGGGAAAC......................................................................2411.001000010
droBip1
GACGCATCGACTGGCAGGGAAATGAGCATGAACAGACCTTCTCCGAATTGGTGAGTGAT---ATAGT-TAATTATTTGTAG---CATTTTAATTT----TAT--TTTAATAA--TTT---------------T--TCAA-A---G-CG--GGGGTCTTGCATAAG------------------------------------------------------------------TCTT--------TT----TT--T---TGT-TG---------------------ATATTTTTTC-GTGTGCGT------------GCGCCTTTGTGACGTCACT----ACGAAG---CATCGATTGA-------CGAATAGAGAAAATAGCAGGGAAACGCACGCGTG------GGAAAATAAAT-TT--ATTTTTT--------TGCATTTA---GA--C-AATAAAASizeHit CountTotal NormTotal
No Reads
dp5
GACGCATTGACTGGCTGGGAAATGAGCATCAGCAGACCTTTGCCGAATTGGTGAGTGTTTTA------------ATT--GG---TTTC-TA--GTTTCATTTCCTTGCATTT--TCT---------------TTGTGTGTG---G-TG--CGTGTCTTGCATAAG------------------------------------------------------------------TGGGAAAACTTCTT----TCGCT---TGT-CGC------GCTTCCT-------CT----CTCT-TTGTGCGT------------GCCTTTTTGTGACGTCACG----C--GCA---AATCGATTGATTTAGCGGCGACACCGTAGA---------AGTGCACGCGTGTGT----GTAAATTAAT-------TTGT---------GGCAAATCTTAAA----ATAAAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................CGCT---TGT-CGC------GCTTCCT-------CT----CT.......................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................AACTTCTT----TCGCT---TGT-CGC------GT...........................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................TGTG---G-TG--CGTGTCTTGCATA........................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................TTTGCCGAATTGGTGAGTGTT................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................GGCGACACCGTAGA---------AGTGCAC..................................................................2111.0010100000000
......................TGAGCATCAGCAGACCTTTGCCGAA............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
....................................................................................................TTCCTTGCATTT--TCT---------------TTGTGT.................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................AAATGAGCATCAGCAGACCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................TTTGTGACGTCACG----C--GCA---AAT.............................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................TGATTTAGCGGCGACACCGTA....................................................................................2111.0010100000000
................................................................................G---TTTC-TA--GTTTCATTTCCTTG................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................TGTGTGTG---G-TG--CGTGTCTTGC...........................................................................................................................................................................................................................................................................................................2111.0010000001000
droPer2
GACGCATTGACTGGCTGGGAAATGAGCATCAGCAGACCTTTGCCGAATTGGTGAGTGTTTTA------------ATT--GG---TTTC-TA--GTTTCATTTCCTTGCATTT--TCT---------------TTGTGTGTG---G-TG--CGTGTCTTGCATAAG------------------------------------------------------------------TGGGAAAACTTCTT----TCGCT---TGT-CGC------GCTTCCT-------CT----CTCT-TTGTGCGT------------GCCTTTTTGTGACGTCACG----C--GCA---AATCGATTGATTTAGCGGCGACACCGTAGA---------A-TGCACGCGTGTGT----GTAAATTAAT-------TTGT------------------------G-GAAAATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......TTGACTGGCTGGGAAATGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000002
......................................................................................................................................................CGTGTCTTGCATAAG------------------------------------------------------------------TGGGA...............................................................................................................................................................................................................................2011.001000001
....................................................................................................................................................................................................................................................................................T-------CT----CTCT-TTGTGCGT------------GCCTTT..........................................................................................................................................2111.001000010
................................................................................................................................................................................................................................................TTCTT----TCGCT---TGT-CGC------GCTTCC.......................................................................................................................................................................................2211.001010000
GACGCATTGACTGGCTGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.ACGCATTGACTGGCTGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
........GACTGGCTGGGAAATGAGCATCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
droWil2
GACGCATTGACTGGCTGGGAAATGAGCATGAACAGACCTTTGCCGAATTGGTGAGTTATTTTTTACA-AAATA--------------------------TTTC-----------TTA---------------T--GAATTT---G-CATTTGTGGCTTGCATAAG------------------------------------------------------------------TGATGATA----CG----TTTGC---CTT-TGT------CTTTTCGTGAGTCGCTCTCTTTCT-GTGTGCGCGCGTGTGTGTGTATGTGTTTGTGACGTCACT----T--GTAGGTCATCGATTGA------TT------------------------------------GTCAATCATAAGACAAT-ATGTAATTAATTAAATTG----------T--G-TAAAACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........GACTGGCTGGGAAATGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200020
..............................................................................................................................................................................................................................................................................................................................TGTTTGTGACGTCACT----T--GTAG..................................................................................................................2112.00202000
....................AATGAGCATGAACAGACCTTTGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
..................................................................................................................................................................................................................................................................................................................................TGTGACGTCACT----T--GTAGGTCA..............................................................................................................2111.00100001
...............................................................................................................................................................................................................................................................................................................................GTTTGTGACGTCACT----T--GTAGGTCATC............................................................................................................2611.00110000
..........................................................................................................................................................................................................................................................................................................................TATGTGTTTGTGACGTCA...............................................................................................................................1811.00101000
................................................................................................................................................................ATAAG------------------------------------------------------------------TGATGATA----CG----TTTGC---C.........................................................................................................................................................................................................2111.00110000
......................TGAGCATGAACAGACCTTTGC................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.........................................................................................................................................................................................................................................................................................................................................TCACT----T--GTAGGTCATCGATTG.......................................................................................................2111.00100100
droVir3
GGCGCATTGACTGGCTGGGCAATGAACATGAGCAGACCTTTGCCGAATTGGTGAGTGATTG--TTAT--GAT---TT--AG---TGTC-TA----TTTATTTCT----------GTAGTGATTTGT----------------------------GCTTGCATAATTGAAATTTGTTTTAAGATTTCACGCCTTTGTTT------TCGATTTTTTTTTTGTGCCTGTGTGTGTGTG--------TG----TG---------------------------------------------CGTGCGT----------GTGCGCTTTTGTGACGTCACA----T--AGC---CATCGATTGA----------TTGAAGACAT----------------------GTGTTAAACATTTAAT--------TTTT--------TGCAATTA---AT--G-AAAATTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................CGATTGA----------TTGAAGACAT----------------------GTGT........................................................2112.002000000000000000000000000000011000000000000000000000000000000000
.....................................................................................................TCT----------GTAGTGATTTGT----------------------------GCTTGC...........................................................................................................................................................................................................................................................................................................2112.002000000100000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................ATCGATTGA----------TTGAAGACAT----------------------GT..........................................................2111.001000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TGTGACGTCACA----T--AGC---CATC............................................................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
............................................................................................................................................................................................................................................................................................................CGT----------GTGCGCTTTTGTGACGTC................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TG---------------------------------------------CGTGCGT----------GTGCGCTTTTGTG.....................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
....................................CCTTTGCCGAATTGGTGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
............................TGAGCAGACCTTTGCCGAATTGGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000010000000000000000000000000
....................AATGAACATGAGCAGACCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TTTGTGACGTCACA----T--AGC---CAT.............................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................T----------GTGCGCTTTTGTGACGTCACA----.........................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................T----------GTAGTGATTTGT----------------------------GCTTGC...........................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000100000000000000000000000
..................................................................................................................................................................................................................TTTTTTTTGTGCCTGTGTGT.....................................................................................................................................................................................................................................2011.001000000001000000000000000000000000000000000000000000000000000000
................................CAGACCTTTGCCGAATTGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000001
................................................................................................................................................................................................................................................................................................................................................................................TGAAGACAT----------------------GTGTTAAACATT................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................G--------TG----TG---------------------------------------------CGTGCGT----------GTGCGCTTT.........................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
....................AATGAACATGAGCAGACCTTTGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
................................CAGACCTTTGCCGAATTGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................2120.501000000000000000000000000000000000000000000000000000000000000001
..............................................................................................................................................................................................................................CTGTGTGTGTGTG--------TG----TG---------------------------------------------C..................................................................................................................................................................18200.102000000010000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGTGTG--------TG----TG---------------------------------------------CGTGCGT----------GTGC..............................................................................................................................................21180.061000000001000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................CTGTGTGTGTGTG--------TG----TG---------------------------------------------CGTG...............................................................................................................................................................21200.051000000000000000000010000000000000000000000000000000000000000000
droMoj3
GACGCATTGACTGGCTGGGCAATGAGCATGAACAGACATTTGCTGAATTGGTGAGTTATTG--TTGT--GATTTATT--TG---TGTT-TAATT------GTC---AAAT----TTTGTTATATGT----------------------------GCTTGCATAATTGAAATTAGTGTTCAGACTTTACGTCTTCGCTTTTTTGTTCGACTATT-----G-----GCGTTTGTGTG--------TG----TTT---------------------------------------------GTGCGT----------ATGCGC-TTTGTGACGTCACA----T--GGC---CATCGATTGA------TTGAATAGACACTT----------------------GTGTTATACTATTAAT-TT-TTTT------------TGCAAATA---AT--G-GAAATTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................ATTGA------TTGAATAGACACTT----------------------GT..........................................................2111.001100000
droGri2
GGCGCATCGACTGGCTGGGAAATGAGCATGACCAGACCTTTGCAGAATTGGTGAGTTATTA--TTAT--GATCTATT--ATGTGCAATGATTATT----TGA--TATGTTAA--GTTGTGATTTCT----------------------------GCTTGCATAATTGACATTTG---------------------------------------------------------TGTG--------------TGTGCA--GAT-TGTGCTCGCGTTTGCT-------TT----GTG---CGTGCGT----------GTGCGCTTTTGTGACGTCACA----T--GGC---CATCGATTGA------TTGAATAGACACTT--------------------GTATGTTGTACAATTAAT-------TTGTT--------TGTAATTA---AT------TAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................TTTG---------------------------------------------------------TGTG--------------TGTGCA--GAT-TG....................................................................................................................................................................................................1911.00110
.................................................................................................................................................................TAATTGACATTTG---------------------------------------------------------TGTG--------------TGTG..............................................................................................................................................................................................................2111.00110

Generated: 05/18/2015 at 11:42 PM