ID:

dsi_18580

 Coordinate:

2r:10124134-10124283 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.7 -17.5 -17.5 -17.5

Flybase annnotation

CDS [2r_10124272_10124679_-]; three_prime_UTR [2r_10124111_10124271_-]; exon [2r_10124111_10124736_-]

No Repeatable elements found

Sense Strand Reads

###############################################################################################################################################################################################################################---------------------------
GGAACTTCTCGGATGCCAGGGACTATGCGGAGGCATCCCGATTCAAGCTGGTCCAGCACTGAGTGAGATCCCGATCCTCCCGTTTCAATCAAACTAATCCTGCAAATGTTGCGTTTGTTTCGGTTTCGCATTGTAATTGTCGCCTAACCTAAGCGTTTGTTGTATTTTATATTTTATGATATTTATTCGTATACTTAATAAACCATAGCGAAAAAAACAACACTGAAATACTAGAAAGTTCCGTTTCGCA
**************************************************.........((..((((....(((..........(((.............(((((.....(((((((....((((..((............))..)))))))))))...)))))............))).......)))....)))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................................................................................ACCATAGCGAAAAAAACAACACTG......................... 24 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................TTGTAATTGTCGCCTAACC..................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................................................CCATAGCGAAAAAAACAACACTG......................... 23 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................GTATACTTAATAAACCATAGC......................................... 21 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................................................................................TACTTAATAAACCATAGCGAAA..................................... 22 0 1 1.00 1 0 0 1 0 0 0
......................................................................................................................TTCGGTTTCGCATTGTAATTG............................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................TCGGGTTCGCATTGTA................................................................................................................... 16 1 3 0.33 1 0 0 0 1 0 0
..............................................................................................................ACGTTTGTCTGGGTTTCGCAT....................................................................................................................... 21 3 4 0.25 1 0 0 0 0 1 0
.........................................................................................CAATCTCATCCAGCAAATGTT............................................................................................................................................ 21 3 6 0.17 1 0 0 0 0 0 1
..................................ATCACGATTCAAGCTACTC..................................................................................................................................................................................................... 19 3 18 0.06 1 1 0 0 0 0 0

Anti-sense strand reads

CCTTGAAGAGCCTACGGTCCCTGATACGCCTCCGTAGGGCTAAGTTCGACCAGGTCGTGACTCACTCTAGGGCTAGGAGGGCAAAGTTAGTTTGATTAGGACGTTTACAACGCAAACAAAGCCAAAGCGTAACATTAACAGCGGATTGGATTCGCAAACAACATAAAATATAAAATACTATAAATAAGCATATGAATTATTTGGTATCGCTTTTTTTGTTGTGACTTTATGATCTTTCAAGGCAAAGCGT
**************************************************.........((..((((....(((..........(((.............(((((.....(((((((....((((..((............))..)))))))))))...)))))............))).......)))....)))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
........AGCCTACGGTCACTGAT................................................................................................................................................................................................................................. 17 1 1 1.00 1 1 0 0 0 0
.............................................................................AGGGCAAAGTTAGTTTA............................................................................................................................................................ 17 1 5 0.20 1 1 0 0 0 0
.................................................................................................AGGACGTTTACATCGGAAAAA.................................................................................................................................... 21 3 6 0.17 1 0 0 1 0 0
.............................................................................................................................................................................................................ATCCCTATTTTTGTTGTGATT........................ 21 3 6 0.17 1 0 1 0 0 0
......................................................................................TTTGTTTGATTAGGATGTT................................................................................................................................................. 19 2 7 0.14 1 0 0 0 1 0
.........................................................................................................................................................................................................TGGTATCGCTTTGTT.................................. 15 1 10 0.10 1 1 0 0 0 0
.........................................AATTTCGACCAGGTCCT................................................................................................................................................................................................ 17 2 11 0.09 1 1 0 0 0 0
...................................................................TAGGGCTAGGAGAGC........................................................................................................................................................................ 15 1 18 0.06 1 0 0 0 0 1
.................................................................TCTCGGGCTAGAAGGG......................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0
.......................ATGCGCCTCAGCAGGGCT................................................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:10124084-10124333 - dsi_18580 GGAACTTCTCGGATGCCAGGGACTATGCGGAGGCATCCCGATTCAAGCTGGTCCAGCACTGAGTG----------------AGATC--------------------------C-------------------------------------------------------------------------CGATCCTCC------CGT--------------------------T------TC-AAT--CAA---------------ACT-----AATCCTGC-AAA---------T----G-----TTGCGTTTGT---TTC-GGTTTC--GC--ATTGTAATTGT---------------CGCC---TAACCTAAGCGTTT--GTTGTATTTTAT------ATTTTAT-----GATATTTATTC-----GTATACTTAATAAACCA---TAGCG-------AAAAAAA-------CAACACT-------GAAATACTAGAAAGTTC-CGTT--TCGCA---
droSec2 scaffold_1:6979171-6979419 - GGAACTTCTCGGATGCCAGGGATTATGCGGAGGCATCCCGATTCAAACTGGTCCAGCACTGAGTG----------------AGATC--------------------------C-------------------------------------------------------------------------CGATCCTCC------CGT--------------------------T------TC-AAT--CAA---------------ACT-----AATCCTGC-AAC---------T----G-----TTGCGTTTGT---TTC-GGTTTT--GC--ATTGTAATTGT---------------CGCC---TAACCTAAGCGTTT--GTTGTATTTTAA------TTTTTAT-----GATATTTATTC-----GTATACTTAATAAACCA---TAGCG-------AAAAAAA--------GACACT-------GAAATACTAAAAAGTTC-CGTT--TCGCA---
dm3 chr2R:9461096-9461341 - GCAACTTCTCGGATGCCAGGGATTATGCAGAGGCATCCCGATTCAAACTGGTCCAGCACTGAGTG----------------AGATC--------------------------C-------------------------------------------------------------------------CGATCCGCC------CGT--------------------------T------TC-AAT--CAA---------------ACT-----AATCCTGC-AAA---------T----G-----TTGCGTTTGT---TTC-GGTTTC--GC--ATTGTAATTGT---------------CGCC---TAACCTAAGCGTTT--GTTGTATTTTAT------TTTTTAT-----GATATTTATTC-----GTATACTTAATAAACCA---AAAAA-------AA-----------AAAACACT-------GAAATACTAGAAAGTTC-CGTT--CCGCA---
droEre2 scaffold_4845:16353237-16353482 + GCAACTTCTCGGATGCCAGGGACTATGCGGAGGCATCCAGATTCAAACTGGTCCAGCACTGAGTG----------------AGATC--------------------------C-------------------------------------------------------------------------CGATCCTTC------CGT--------------------------T------TC-AAT--CAA---------------ACT-----AATCCTGC-AAG---------T----G-----TTGCGTTTGT---TTC-GGTTTC--GC--ATTGTAATTGT---------------ACCC---TAACCTAAGCGTTT--GTTGTATTTTAT------TTCCTAT-----GATATTTATTC-----GTATACTTAATAAACCT---TAGCA-------AAAA-----------AACACT-------GAAATACTAGAAAGTTC-CGTT--TTGCA---
droYak3 2R:7487541-7487785 + GGAACTTCTCGGATGCCAGGGATTATGCGGAGGCATCCAGATTCAAACTGGTCCAGCACTGAGTG----------------AGATC--------------------------C-------------------------------------------------------------------------CGATCCTCC------CGT--------------------------T------TC-AAT--CAA---------------ACT-----AATCCTGC-AAA---------T----G-----TTGCGTTTGT---TTC-GGTTCC--GC--ATTGTAATTGT---------------TCGC---TAACCTGAGCGTTT--GTTGTATTTTAT------TTCCTAT-----GATATTTATTC-----GTATACTTAATAAACCT---TAGCA-------AAA------------AACACT-------GAAACACTGGAAAGTTT-CGTT--TTGCA---
droEug1 scf7180000409462:3402705-3402970 + GCAACTTCTCCGATGTCCGGGATTATGCCGAGGCAGCACGCTTCAAATTGGTCCAACACTGAGTG----------------AGATT----------------------------------------------------------------------------------------------------CGATCCAATCCTTGACGT--------------------------T------TCAAAT--CAA---------------ACT-----AATCCTGC-AAA---------T----G-----TTTCGTTTGT---TTT-GGTTTC--TC--ATTGTACTTGT---------------AACCTTATGACCTAAGCGTTT--GTTGTATCTTAA------TTTTTAT-----CATATTTATTC-----GTATACTTAATAAACAA---TAGCA-------AAAAAAGCAGA--AAAAAACT-----GTGAAATACTAGAAAGTTC-CGTT--GTGCA---
droBia1 scf7180000302291:700589-700826 + GGAACTTCTCTGATGCCAGGGACTATGCGGAGGCAGCTCGCTTCAAGTTGGTCCAGCACTGAGTG----------------AGATC----------------------------------------------------------------------------------------------------CGATCCCCC------CGT--------------------------T------TC-AAT--CAG---------------ACT-----AATCCTGC-AAG---------T----C-----TTTGGTTTGT---TTT-GGTTTC--TC--ATTGCAC---------------------CC---TAACCTAAGCGTTC--GTTGTATTTTAC------CGTTTAT-----GATATTTATTC-----GTATACTTAATAAACAA---AAGCA-------AAA------------ATCACT-------GAAATACTAGAAAGTTC-CGTT--GCGCA---
droTak1 scf7180000415401:1195994-1196243 + GGAACTTCTCCGATGCCCGGGATTATGCGGAGGCAGCCCGCTTCAAATTGGTCCAGCACTGAGTG----------------AGATC----------------------------------------------------------------------------------------------------CGATCCTCCC--C--CGT--------------------------T------TTGAAT--CCA---------------ACT-----AATCCTGC-AAA---------T----G-----TTGCGTTTGT---TTT-GGTTTC--TC--ATCTTACCT------------------TCC---TAACCTAAGCGTTC--GTTGTATTTTAC------CCTTTAT-----GATATTTATTC-----GTATACTTAATAAACAA---TAGCA-------AAAAAGC------AAAACACT-------GAAATACTAGAAAGTTC-CGTT--GTGCA---
droEle1 scf7180000491282:708788-709066 - GGAACTTCTCCGATGCCAGGGATTATGCGGAGGCCGCTCGCTTCAAGTTGGTCCAGCACTGAGTG----------------AGATT--------------------------C------------------------------------------AATTCGATCTGATTC--ATTTCGATCTGATTCGATCCTTC------CCT--------------------------T------TC-AAT--CAA---------------ACT-----AATCCTGC-AAA---------T----T-----TTGTGTTTGT---TTT-GGTTTC--GC--ATTGTAC---------------------CC---TAACCTAAGCGTTT--GTTGTATTTTAC------TTCTTAT-----GATATTTATTC-----GTATACTTAATAAATAA---TAGCA-------AAAAAAAA-----AAAACA---AAATCCGAATTGCTAGAAAGTTC-CGTT--GTGCA---
droRho1 scf7180000780106:15332-15576 + GGAACTTCTCCGATGCCAGGGATTACGCGGAGGCCGCTCGCTTCAAGTTGGTCCAGCACTGAGTG----------------AGACC----------------------------------------------------------------------------------------------------CGATCCTCC------CGT--------------------------T------TC-AAT--CAA---------------ACT-----AATCCTGC-AAA---------T----T-----TTGTGTTTGT---TTT-GGTTTC--GC--ATTGTATCTAT-----------------CC---TAACCTAAGCGTTC--GTTGTATTTTAC------TTTTTAT-----GATATTTATTC-----GTATACTTAATAAACAA---TAGCA-------AAAAAAT------G---AACT-------AAAATGCCAGAAAGTTC-CGTT--GTGCA---
droFic1 scf7180000454039:277709-277945 - GGAACTTCTCCGATGCCCGGGATTATGCGGAGGCCTCTCGCTTCAAATTGGTCCAGCACTGAGTG----------------AGATC----------------------------------------------------------------------------------------------------CGATCCTCC------AGA------------------------A-T------TC-ATT--CGA---------------ACT-----AATCCTGC-AAG---------T----T-----TTGAGTTTGT---TTT-GGTTTC--GC--ATTGTT--------------------CCCC---TAACCTAAGCGTTC--GTTGTATATTAC------CCTTTAT-----GATATTTATTC-----GTATACTTAATAAACAG---TAGCA-------AAAAAAA----------------------ATAAACTAGAAAGTTC-CATT--GTGCA---
droKik1 scf7180000302638:204113-204363 + GCAACTTTTCGGATCCCAGGGATTACGCCGAGGCAGCTCGATTCAAGTTGGTGAAGAACTAAGCC----------------C--------------------------------ATATC-----------------------------------CGATTCGAT-----------T----------CCGATCCT------------------------------------------------GT--ACA---------------ATT-----AACCCTGC-AAG--------------------TTGTGTTTGT---TTT-GGTTTC--GC--ATTGTAC---------------------CC---TAACCTAAGCGTTT--GTTGTATTT-AA------TTTTTAT-----GATATTTATTT-----GTATGCTTAATAAACCA---TAGAAAACCAAGAAAAAAT------CAGACTCA-------GAGATGCTAGAAAGTTC-CGTT--GGTGA---
droAna3 scaffold_13266:16763026-16763312 - GGAATTTCTCCGATCCTCGGGATTACGCGGAGGCCTCTCGCTTCAAACTGATCAAGAACTGAGATTCGTA----CTCCTTGTGATC--------------------------C-------------------------------------------------------------------------TGTAC---C------TGT---------ACCA---------------------C-AGT-CCAA---------------GCT-----AATCCTGC-AAA---------TATTGCTCACGTTGTGTTTGTTCTTTT-GGTTTC--GC--ATTGTACCTAT----GTACTTCTCTCCCCC---TAACCTAAGCGTTC--GTTTTAATT-AA------TTTTTAT-----GATATTTATTT-----GTACACTTAATAAAAAAAAATAGCA-------AATA----------AAATATG-------GAAATACTAGAAAGTTC-CGTT--GTGCAATG
droBip1 scf7180000396735:15646-15933 - GGAATTTCTCCGATCCTCGGGATTACGCAGAGGCCCACCGCTTCAAATTGATCAAGAACTGAGATTGGTA----GTACCCGTGATC--------------------------C-------------------------------------------------------------------------TGTAC---C------TGT---------ACCA---------------------C-AGT-CCAA---------------GCT-----AATCCTGC-AAA---------TATTGCTCACGTTGTGTTTGTTCTTTT-GGTTCC--GC--ATTGTACCTACATATGTACTTCTCTCCCCC---TAACCTAAGCGTTC--GTTTTAATT-AA------TTTTTAT-----GATATTTATTT-----GTACACTTAATACAAAA---TAGCA-------AATA----------AAATATG-------GAAATACTAGAAAGTTC-CGTT--GTGCAATG
dp5 3:14621486-14621784 + GAAACTTTTCCGATGCCCGGGATTATGCCGAGGCGAGTCGCTTCAAGCTGGTCCAGCATTGAGAGAGGAA----G------AGATC--------------------------CCGATTC-----------------------------------CGATT----------CCGATTCCGGTC----CCGATCC--C------CGTTCTA---------------------TTTCGTGAGC-AAA--CAA---------------ACT-----AACTCTGC-AATCAGTATACGTATTCCCCA---TTTGTTTGG---TTC-GGTTTT--GC--ATTGTAC---------------------TC---TAACATAAGCGTTC--GTTGTATTTTAT-----ATTTTTATACATAGATATTTATTC-----GTACTCCTAATAAACAA----AGCA-------AAA---------------ACTGAAA---TCATTGCTAGAAAGTTC-CGTT--GTGCA---
droPer2 scaffold_4:2984564-2984854 - GGAACTTTTCCGATGCCCGGGATTATGCCGAGGCGAGTCGCTTCAAGCTGGTCCAGCATTGAGAGAGGAA----G------AGATC--------------------------CCGATTC-----------------------------------CGAT----------------TCCGGTC----CCGATCC--C------CGTTCTA---------------------TTTCGTGAGC-AAA--CAA---------------ACT-----AACTCTGC-AATCAGTATACGTATTCCCCA---TTTGTTTGG---TTCGGGTTTT--GC--ATTGTAC---------------------TC---TAACATAAGCGTTC--GTTGTATTTTAT-------ATTTATACATAGATATTTATTC-----GTACTCCTAATAAACAA----AGCA-------AA----------------ACTGAAA---TCATTGCTAGAAAGTTC-CGTT--GTGCA---
droWil2 scf2_1100000004514:3807631-3807900 - GTAATTTCTCCGATCCCCGTGACTATGCCGAGGCAAATCGTTTCAAATTGGTCCAAAAGT-AGTG----------------AGATC----------------------------------------------------------------------------------------------------TAATTCCCCC-----TCT---ATATGGATGTTA---------ATTTC---------T--TAA---------------ACTAAT---ATTGTGC-AAT---------TA-CTT-----TCAAATGTTT---TTG-TGTTTC--TC--CATGTA----------------------CC---TAACCTAAGCGTTTACGTTTTATTTTTT---GTATTATTACG----TTTATTTATTTTTTCTCTACACTTAATAAAAACAAAAAACA-------A-------------AAATGTA-------CAATTGCTAGAAAGTTC-GTTTTTGTTCAA--
droVir3 scaffold_12875:11136424-11136718 + GCAACTTCTCCGATGCCCGGGACTATGCCGAGGCAAGTCGCTTCAAGCTGGTCCAGCACTGAGAG----------------AAAGTGCCAGTGAAAGT-AATTGTGTGCGTGTGCGTGTGTGTACTAACAGC--TCGAGGTTCTACG-GATCTTCAACTTGAT-----------C----------TTGATCT----------GT--------------------------T-CTTGAGC-AAACCCAA---------------ACTAATTG----CAAT-A-----------T--ATT-----TCATGTTCTC---TTG-AGTTTT--GC--ATTGAAAT-------------------------TAACCCTAGCCTT------GTGTTTGAGTT-GTATTTTTATG----AATATTTATTT-----TTACATTTAATAAAAAA---AAAA--ACTGCGAAAAAAA-----------------------------------------------------
droMoj3 scaffold_6496:15790307-15790585 - GAAACTTCTCCGATCCGAGGGATTATGCCGAGGCCAATCGCTTCAAGTTGGTGCAGT---GAGAGGGGCGGGAGG------AAATGGATATTGAAAGTGAATTGTGAATATTT-TGT-ATTGTACTAACAGAGCT-----TTTTATGAGATC----------------------------------TATTATCCTATCT---GA--------------------------TCT---------T--CACACTAA-T--------CAC-----AATCTTGATAAA---------T----T-----TCATGTTCTC---TTG-AGTTTT--GC--ATTGAAA----------------------T---TAACCTAAGCGT------TGTATTTGA-------------------GTTATTTATTT-----TTATTTTTAATAAAAAA---C--------------------------AATTGT-------GAAATGACACAAA-------------------
droGri2 scaffold_15245:13598790-13599103 - GCAACTTCTCCGATCCAAGGGATTATGCCGAGGCGAAGCGCTTCAAATTGGTCCAGCATTGAGAAAGTGA----A------AGTTC--------------------------GGCATCCTTCTACTAACAAC---------------------------------------------GTTG----CT------------------------GGAAGTTCAACTAGATCATTCC----TC-------AAACAAAAGCACCACCAACTAATTG----CATT-ATA---------T----T-----TCATGTTCTC---TTG-AGTTTTTTGCAAATTGA-T---------------------AT---TAACTTAAGT-TTT--GTACTATTTCAGTTCGTATTTTTATC----GATATTTATTG-----TTACATTTAATAAAAAA---AATCA-------ATTGTGA---GAAAAAACCCAGAAA---AATATGCTTGAAAGTTGTTGTT--TTGCA---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGAACTTCTCGGATGCCAGGGACTATGCGGAGGCATCCCGATTCAAGCTGGTCCAGCACTGAGTG----------------AGATC--------------------------C-------------------------------------------------------------------------CGATCCTCC------CGT--------------------------T------TC-AAT--CAA---------------ACT-----AATCCTGC-AAA---------T----G-----TTGCGTTTGT---TTC-GGTTTC--GC--ATTGTAATTGT---------------CGCC---TAACCTAAGCGTTT--GTTGTATTTTAT------ATTTTAT-----GATATTTATTC-----GTATACTTAATAAACCA---TAGCG-------AAAAAAA-------CAACACT-------GAAATACTAGAAAGTTC-CGTT--TCGCA---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCA---TAGCG-------AAAAAAA-------CAACACT-------G...............................2411.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................TTGTAATTGT---------------CGCC---TAACC.....................................................................................................................................................1911.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA---TAGCG-------AAAAAAA-------CAACACT-------G...............................2311.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTTAATAAACCA---TAGC....................................................................2111.00100000100000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTAATAAACCA---TAGCG-------AAA.........................................................2211.00100000100000000000
............................................................................................................................................................................................................................................................................................................................TTC-GGTTTC--GC--ATTGTAATTG.................................................................................................................................................................................2111.00101000000000000000
droSec2
GGAACTTCTCGGATGCCAGGGATTATGCGGAGGCATCCCGATTCAAACTGGTCCAGCACTGAGTG----------------AGATC--------------------------C-------------------------------------------------------------------------CGATCCTCC------CGT--------------------------T------TC-AAT--CAA---------------ACT-----AATCCTGC-AAC---------T----G-----TTGCGTTTGT---TTC-GGTTTT--GC--ATTGTAATTGT---------------CGCC---TAACCTAAGCGTTT--GTTGTATTTTAA------TTTTTAT-----GATATTTATTC-----GTATACTTAATAAACCA---TAGCG-------AAAAAAA--------GACACT-------GAAATACTAAAAAGTTC-CGTT--TCGCA---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................GGATTATGCGGAGGCATCCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
...............CCAGGGATTATGCGGAGGCATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
...............................................................................................................................................................................................................................................................................................................TTGCGTTTGT---TTC-GGTTTT--GC--...........................................................................................................................................................................................2111.0011000
.........................................................................................................................................................................................................................................................................................................................................C--ATTGTAATTGT---------------CGCC---TAACC.....................................................................................................................................................2111.0011000
.......CTCGGATGCCAGGGATTATGCGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
..................................................................................................................................................................................................................................................................................................................................TTTT--GC--ATTGTAATTGT---------------CGCC---TAACCTA...................................................................................................................................................2811.0010010
....................................................................................................................................................................................................................................................................................................................TTTGT---TTC-GGTTTT--GC--ATTGT......................................................................................................................................................................................2111.0010001
........................................................................................................................................................................................................................................................................................AAC---------T----G-----TTGCGTTTGT---TTC-GGT....................................................................................................................................................................................................2111.0010100
.............................................AACTGGTCCAGCACTGAGTG----------------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
................CAGGGATTATGCGGAGGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
................................................................................................................................................................................................................................................................................................................TGCGTTTGT---TTC-GGTTTT--GC--...........................................................................................................................................................................................2011.0010001
dm3
GCAACTTCTCGGATGCCAGGGATTATGCAGAGGCATCCCGATTCAAACTGGTCCAGCACTGAGTG----------------AGATC--------------------------C-------------------------------------------------------------------------CGATCCGCC------CGT--------------------------T------TC-AAT--CAA---------------ACT-----AATCCTGC-AAA---------T----G-----TTGCGTTTGT---TTC-GGTTTC--GC--ATTGTAATTGT---------------CGCC---TAACCTAAGCGTTT--GTTGTATTTTAT------TTTTTAT-----GATATTTATTC-----GTATACTTAATAAACCA---AAAAA-------AA-----------AAAACACT-------GAAATACTAGAAAGTTC-CGTT--CCGCA---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................T-----GATATTTATTC-----GTATACTTAAT.................................................................................2312.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TAT-----GATATTTATTC-----GTATACTTAAT.................................................................................2512.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TAT------TTTTTAT-----GATATTTATTC-----GTATACT.....................................................................................2812.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TATTTATTC-----GTATACTTAATAA...............................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GATGCCAGGGATTATGCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CGTTT--GTTGTATTTTAT------TTTT....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TAT------TTTTTAT-----GATATTTATTC-----GTAT........................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AAA---------T----G-----TTGCGTTTGT---TTC-GGT....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TTTGT---TTC-GGTTTC--GC--ATTGTA.....................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................ACT-----AATCCTGC-AAA---------T----G-----TTGCGTTTGT---T..........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................ACTGAGTG----------------AGATC--------------------------C-------------------------------------------------------------------------CGATCCG......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................C--ATTGTAATTGT---------------CGCC---TA........................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAT-----GATATTTATTC-----GTAT........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................T-----GATATTTATTC-----GTATACTTAATAAACC............................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----GTATACTTAATAAACCA---........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ATGCCAGGGATTATGCAGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................GCGTTTGT---TTC-GGTTTC--GC--A..........................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAT-----GATATTTATTC-----GTATACTTAAT.................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................AAGCGTTT--GTTGTATTTTAT------TT......................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................GTAATTGT---------------CGCC---TAACCTAAGCGTT.............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AAT--CAA---------------ACT-----AATCCTGC-AAA---------T----G-----TTGCGTT.................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TCCAGCACTGAGTG----------------AGATC--------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AT------TTTTTAT-----GATATTTATTC-----GTATACTT....................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACCA---AAAAA-------AA-----------AAAA...........................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCAACTTCTCGGATGCCAGGGACTATGCGGAGGCATCCAGATTCAAACTGGTCCAGCACTGAGTG----------------AGATC--------------------------C-------------------------------------------------------------------------CGATCCTTC------CGT--------------------------T------TC-AAT--CAA---------------ACT-----AATCCTGC-AAG---------T----G-----TTGCGTTTGT---TTC-GGTTTC--GC--ATTGTAATTGT---------------ACCC---TAACCTAAGCGTTT--GTTGTATTTTAT------TTCCTAT-----GATATTTATTC-----GTATACTTAATAAACCT---TAGCA-------AAAA-----------AACACT-------GAAATACTAGAAAGTTC-CGTT--TTGCA---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........GATGCCAGGGACTATGCGGAGGCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
.......................................................................................................................................................................................................................................................A---------------ACT-----AATCCTGC-AAG---------T----G-----TTGC....................................................................................................................................................................................................................2111.0010001000
..AACTTCTCGGATGCCAGGGACTATGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000
..............................................................GTG----------------AGATC--------------------------C-------------------------------------------------------------------------CGATCCTTC------CG............................................................................................................................................................................................................................................................................................................................2011.0010001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTAATAAACCT---TAGC....................................................................1911.0010100000
.....................................................................................................................................................................................................................................................CAA---------------ACT-----AATCCTGC-AAG---------T----G-----T.......................................................................................................................................................................................................................2011.0010000100
.................................................................................................................................................................................................................................................................................................................................................AATTGT---------------ACCC---TAACCTAAGCGTT.............................................................................................................................................2311.0010000100
droYak3
GGAACTTCTCGGATGCCAGGGATTATGCGGAGGCATCCAGATTCAAACTGGTCCAGCACTGAGTG----------------AGATC--------------------------C-------------------------------------------------------------------------CGATCCTCC------CGT--------------------------T------TC-AAT--CAA---------------ACT-----AATCCTGC-AAA---------T----G-----TTGCGTTTGT---TTC-GGTTCC--GC--ATTGTAATTGT---------------TCGC---TAACCTGAGCGTTT--GTTGTATTTTAT------TTCCTAT-----GATATTTATTC-----GTATACTTAATAAACCT---TAGCA-------AAA------------AACACT-------GAAACACTGGAAAGTTT-CGTT--TTGCA---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
GCAACTTCTCCGATGTCCGGGATTATGCCGAGGCAGCACGCTTCAAATTGGTCCAACACTGAGTG----------------AGATT----------------------------------------------------------------------------------------------------CGATCCAATCCTTGACGT--------------------------T------TCAAAT--CAA---------------ACT-----AATCCTGC-AAA---------T----G-----TTTCGTTTGT---TTT-GGTTTC--TC--ATTGTACTTGT---------------AACCTTATGACCTAAGCGTTT--GTTGTATCTTAA------TTTTTAT-----CATATTTATTC-----GTATACTTAATAAACAA---TAGCA-------AAAAAAGCAGA--AAAAAACT-----GTGAAATACTAGAAAGTTC-CGTT--GTGCA---SizeHit CountTotal NormTotal
No Reads
droBia1
GGAACTTCTCTGATGCCAGGGACTATGCGGAGGCAGCTCGCTTCAAGTTGGTCCAGCACTGAGTG----------------AGATC----------------------------------------------------------------------------------------------------CGATCCCCC------CGT--------------------------T------TC-AAT--CAG---------------ACT-----AATCCTGC-AAG---------T----C-----TTTGGTTTGT---TTT-GGTTTC--TC--ATTGCAC---------------------CC---TAACCTAAGCGTTC--GTTGTATTTTAC------CGTTTAT-----GATATTTATTC-----GTATACTTAATAAACAA---AAGCA-------AAA------------ATCACT-------GAAATACTAGAAAGTTC-CGTT--GCGCA---SizeHit CountTotal NormTotal
No Reads
droTak1
GGAACTTCTCCGATGCCCGGGATTATGCGGAGGCAGCCCGCTTCAAATTGGTCCAGCACTGAGTG----------------AGATC----------------------------------------------------------------------------------------------------CGATCCTCCC--C--CGT--------------------------T------TTGAAT--CCA---------------ACT-----AATCCTGC-AAA---------T----G-----TTGCGTTTGT---TTT-GGTTTC--TC--ATCTTACCT------------------TCC---TAACCTAAGCGTTC--GTTGTATTTTAC------CCTTTAT-----GATATTTATTC-----GTATACTTAATAAACAA---TAGCA-------AAAAAGC------AAAACACT-------GAAATACTAGAAAGTTC-CGTT--GTGCA---SizeHit CountTotal NormTotal
No Reads
droEle1
GGAACTTCTCCGATGCCAGGGATTATGCGGAGGCCGCTCGCTTCAAGTTGGTCCAGCACTGAGTG----------------AGATT--------------------------C------------------------------------------AATTCGATCTGATTC--ATTTCGATCTGATTCGATCCTTC------CCT--------------------------T------TC-AAT--CAA---------------ACT-----AATCCTGC-AAA---------T----T-----TTGTGTTTGT---TTT-GGTTTC--GC--ATTGTAC---------------------CC---TAACCTAAGCGTTT--GTTGTATTTTAC------TTCTTAT-----GATATTTATTC-----GTATACTTAATAAATAA---TAGCA-------AAAAAAAA-----AAAACA---AAATCCGAATTGCTAGAAAGTTC-CGTT--GTGCA---SizeHit CountTotal NormTotal
No Reads
droRho1
GGAACTTCTCCGATGCCAGGGATTACGCGGAGGCCGCTCGCTTCAAGTTGGTCCAGCACTGAGTG----------------AGACC----------------------------------------------------------------------------------------------------CGATCCTCC------CGT--------------------------T------TC-AAT--CAA---------------ACT-----AATCCTGC-AAA---------T----T-----TTGTGTTTGT---TTT-GGTTTC--GC--ATTGTATCTAT-----------------CC---TAACCTAAGCGTTC--GTTGTATTTTAC------TTTTTAT-----GATATTTATTC-----GTATACTTAATAAACAA---TAGCA-------AAAAAAT------G---AACT-------AAAATGCCAGAAAGTTC-CGTT--GTGCA---SizeHit CountTotal NormTotal
No Reads
droFic1
GGAACTTCTCCGATGCCCGGGATTATGCGGAGGCCTCTCGCTTCAAATTGGTCCAGCACTGAGTG----------------AGATC----------------------------------------------------------------------------------------------------CGATCCTCC------AGA------------------------A-T------TC-ATT--CGA---------------ACT-----AATCCTGC-AAG---------T----T-----TTGAGTTTGT---TTT-GGTTTC--GC--ATTGTT--------------------CCCC---TAACCTAAGCGTTC--GTTGTATATTAC------CCTTTAT-----GATATTTATTC-----GTATACTTAATAAACAG---TAGCA-------AAAAAAA----------------------ATAAACTAGAAAGTTC-CATT--GTGCA---SizeHit CountTotal NormTotal
No Reads
droKik1
GCAACTTTTCGGATCCCAGGGATTACGCCGAGGCAGCTCGATTCAAGTTGGTGAAGAACTAAGCC----------------C--------------------------------ATATC-----------------------------------CGATTCGAT-----------T----------CCGATCCT------------------------------------------------GT--ACA---------------ATT-----AACCCTGC-AAG--------------------TTGTGTTTGT---TTT-GGTTTC--GC--ATTGTAC---------------------CC---TAACCTAAGCGTTT--GTTGTATTT-AA------TTTTTAT-----GATATTTATTT-----GTATGCTTAATAAACCA---TAGAAAACCAAGAAAAAAT------CAGACTCA-------GAGATGCTAGAAAGTTC-CGTT--GGTGA---SizeHit CountTotal NormTotal
No Reads
droAna3
GGAATTTCTCCGATCCTCGGGATTACGCGGAGGCCTCTCGCTTCAAACTGATCAAGAACTGAGATTCGTA----CTCCTTGTGATC--------------------------C-------------------------------------------------------------------------TGTAC---C------TGT---------ACCA---------------------C-AGT-CCAA---------------GCT-----AATCCTGC-AAA---------TATTGCTCACGTTGTGTTTGTTCTTTT-GGTTTC--GC--ATTGTACCTAT----GTACTTCTCTCCCCC---TAACCTAAGCGTTC--GTTTTAATT-AA------TTTTTAT-----GATATTTATTT-----GTACACTTAATAAAAAAAAATAGCA-------AATA----------AAATATG-------GAAATACTAGAAAGTTC-CGTT--GTGCAATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............CTCGGGATTACGCGGAGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.........................................................................................................................................................................................................................................................................................AA---------TATTGCTCACGTTGTGTTT................................................................................................................................................................................................................2111.001010000
droBip1
GGAATTTCTCCGATCCTCGGGATTACGCAGAGGCCCACCGCTTCAAATTGATCAAGAACTGAGATTGGTA----GTACCCGTGATC--------------------------C-------------------------------------------------------------------------TGTAC---C------TGT---------ACCA---------------------C-AGT-CCAA---------------GCT-----AATCCTGC-AAA---------TATTGCTCACGTTGTGTTTGTTCTTTT-GGTTCC--GC--ATTGTACCTACATATGTACTTCTCTCCCCC---TAACCTAAGCGTTC--GTTTTAATT-AA------TTTTTAT-----GATATTTATTT-----GTACACTTAATACAAAA---TAGCA-------AATA----------AAATATG-------GAAATACTAGAAAGTTC-CGTT--GTGCAATGSizeHit CountTotal NormTotal
No Reads
dp5
GAAACTTTTCCGATGCCCGGGATTATGCCGAGGCGAGTCGCTTCAAGCTGGTCCAGCATTGAGAGAGGAA----G------AGATC--------------------------CCGATTC-----------------------------------CGATT----------CCGATTCCGGTC----CCGATCC--C------CGTTCTA---------------------TTTCGTGAGC-AAA--CAA---------------ACT-----AACTCTGC-AATCAGTATACGTATTCCCCA---TTTGTTTGG---TTC-GGTTTT--GC--ATTGTAC---------------------TC---TAACATAAGCGTTC--GTTGTATTTTAT-----ATTTTTATACATAGATATTTATTC-----GTACTCCTAATAAACAA----AGCA-------AAA---------------ACTGAAA---TCATTGCTAGAAAGTTC-CGTT--GTGCA---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................TTATGCCGAGGCGAGTCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
.................................CGAGTCGCTTCAAGCTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
........................................................................................................................................................................................................................................................................................................................G---TTC-GGTTTT--GC--ATTGTA.....................................................................................................................................................................................1811.0010100000000
................................................TGGTCCAGCATTGAGAGAGGAA----G------AG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001000
............................................................................................................................................................................................................................................AGC-AAA--CAA---------------ACT-----AACTCTGC-AATCAGT........................................................................................................................................................................................................................................2711.0010100000000
.....................................................................................................................................................................................................................................TTTCGTGAGC-AAA--CAA---------------ACT-----A.......................................................................................................................................................................................................................................................2011.0010000001000
..........................................................................................................................................................................................................................................TGAGC-AAA--CAA---------------ACT-----AACTCTGC-AATC...........................................................................................................................................................................................................................................2611.0010001000000
.................................................................................................................................................................................................................................................................................CTCTGC-AATCAGTATACGTA.................................................................................................................................................................................................................................2011.0010000001000
.................................................................................................................................................................................................................................................................................................................TTGTTTGG---TTC-GGTTTT--GC--ATTGTAC---------------------TC---..........................................................................................................................................................2811.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATACATAGATATTTATTC-----GTACTCCT....................................................................................2611.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATATTTATTC-----GTACTCC.....................................................................................2111.0010100000000
droPer2
GGAACTTTTCCGATGCCCGGGATTATGCCGAGGCGAGTCGCTTCAAGCTGGTCCAGCATTGAGAGAGGAA----G------AGATC--------------------------CCGATTC-----------------------------------CGAT----------------TCCGGTC----CCGATCC--C------CGTTCTA---------------------TTTCGTGAGC-AAA--CAA---------------ACT-----AACTCTGC-AATCAGTATACGTATTCCCCA---TTTGTTTGG---TTCGGGTTTT--GC--ATTGTAC---------------------TC---TAACATAAGCGTTC--GTTGTATTTTAT-------ATTTATACATAGATATTTATTC-----GTACTCCTAATAAACAA----AGCA-------AA----------------ACTGAAA---TCATTGCTAGAAAGTTC-CGTT--GTGCA---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................AC---------------------TC---TAACATAAGCGTTC--GT........................................................................................................................................2011.001000001
droWil2
GTAATTTCTCCGATCCCCGTGACTATGCCGAGGCAAATCGTTTCAAATTGGTCCAAAAGT-AGTG----------------AGATC----------------------------------------------------------------------------------------------------TAATTCCCCC-----TCT---ATATGGATGTTA---------ATTTC---------T--TAA---------------ACTAAT---ATTGTGC-AAT---------TA-CTT-----TCAAATGTTT---TTG-TGTTTC--TC--CATGTA----------------------CC---TAACCTAAGCGTTTACGTTTTATTTTTT---GTATTATTACG----TTTATTTATTTTTTCTCTACACTTAATAAAAACAAAAAACA-------A-------------AAATGTA-------CAATTGCTAGAAAGTTC-GTTTTTGTTCAA--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......TCTCCGATCCCCGTGACTATGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
..AATTTCTCCGATCCCCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
................CCGTGACTATGCCGAGGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
.............................................AATTGGTCCAAAAGT-AGTG----------------AGATC----------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................2411.00110000
.........................TGCCGAGGCAAATCGTTTCAAATTGGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00110000
.....TTCTCCGATCCCCGTGACTATGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
...............................................TTGGTCCAAAAGT-AGTG----------------AGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
......TCTCCGATCCCCGTGACTATGCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
..................................................................................................................................................................................................................................................................................TGTGC-AAT---------TA-CTT-----TCAAATG.................................................................................................................................................................................................................2011.00100010
droVir3
GCAACTTCTCCGATGCCCGGGACTATGCCGAGGCAAGTCGCTTCAAGCTGGTCCAGCACTGAGAG----------------AAAGTGCCAGTGAAAGT-AATTGTGTGCGTGTGCGTGTGTGTACTAACAGC--TCGAGGTTCTACG-GATCTTCAACTTGAT-----------C----------TTGATCT----------GT--------------------------T-CTTGAGC-AAACCCAA---------------ACTAATTG----CAAT-A-----------T--ATT-----TCATGTTCTC---TTG-AGTTTT--GC--ATTGAAAT-------------------------TAACCCTAGCCTT------GTGTTTGAGTT-GTATTTTTATG----AATATTTATTT-----TTACATTTAATAAAAAA---AAAA--ACTGCGAAAAAAA-----------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................CT----------GT--------------------------T-CTTGAGC-AAACCCAA---------------A...............................................................................................................................................................................................................................................................2113.003000000000000000001000000000002000000000000000000000000000000000
......................CTATGCCGAGGCAAGTCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000001000000000000010000000000000000000000000000000000000000
...........................................CAAGCTGGTCCAGCACTGAGAG----------------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000000000000001000000000000000100000000000000000000000000000
..............................AGGCAAGTCGCTTCAAGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000002000000000000000000000000000000000
........................................................................................................................................................TTCAACTTGAT-----------C----------TTGATCT----------GT--------------------------.................................................................................................................................................................................................................................................................................................2112.002200000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AACAGC--TCGAGGTTCTACG-GATCTTC............................................................................................................................................................................................................................................................................................................................................................................2612.002000000000000000100100000000000000000000000000000000000000000000
..............................................................................................................................AACAGC--TCGAGGTTCTACG-GATCTT.............................................................................................................................................................................................................................................................................................................................................................................2511.001010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAAAAAA---AAAA--ACTGCG............................................................2011.001000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................GATCT----------GT--------------------------T-CTTGAGC-AAACC..................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
.......................................................................................CCAGTGAAAGT-AATTGTGTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
.............................................................................................................................................................................................TCT----------GT--------------------------T-CTTGAGC-AAACCCAA---------------A...............................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
.....................ACTATGCCGAGGCAAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................GTGTGTACTAACAGC--TCGAGG...........................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TACTAACAGC--TCGAGGTTCTAT.....................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................ACTAACAGC--TCGAGGTTCT.......................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................AACAGC--TCGAGGTTCTACG-GAT................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................ACTAACAGC--TCGAGGTTCTAC.....................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................CATGTTCTC---TTG-AGTTTT--GC--ATT........................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................GTGTGCGTGTGTGTACTAACA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TG----AATATTTATTT-----TTACATTTA...................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AT-------------------------TAACCCTAGCCTT------GTGTTTGAGTT-GT.........................................................................................................................2811.001000000000000000000000000000001000000000000000000000000000000000
..............................AGGCAAGTCGCTTCAAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CTAGCCTT------GTGTTTGAGT.............................................................................................................................1811.001000000000000000010000000000000000000000000000000000000000000000
..................................................GTCCAGCACTGAGAG----------------AAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................TCTTCAACTTGAT-----------C----------TTGAT.........................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................CTAACAGC--TCGAGGTTCTACG-GATC...............................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
.........................................TTCAAGCTGGTCCAGCACTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................GAT-----------C----------TTGATCT----------GT--------------------------T-CTTGAGC-.......................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TCAACTTGAT-----------C----------TTGATCT----------GT--------------------------T-CTTGAGC-.......................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000010000000000000000000000000000000000
.................................................................................................T-AATTGTGTGCGTGTGCGTGT................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................CT----------GT--------------------------T-CTTGAGC-AAACCCAA---------------ACTA............................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................T------GTGTTTGAGTT-GTATTTT....................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
...........................................CAAGCTGGTCCAGCACTGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AACAGC--TCGAGGTTCTACG-GATC...............................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CCTAGCCTT------GTGTTTGAGTT-G..........................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..................................................GTCCAGCACTGAGAG----------------AAAGTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................CTTCAACTTGAT-----------C----------TTGATCT----------GT--------------------------T-...............................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..........................................................CTGAGAG----------------AAAGTGCCAGTGAAAGT-....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GCCTT------GTGTTTGAGTT-GTATTT.....................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................ATCT----------GT--------------------------T-CTTGAGC-AAACCC.................................................................................................................................................................................................................................................................................2011.001000000000000000000010000000000000000000000000000000000000000000
............................................................................................................................................................ACTTGAT-----------C----------TTGATCT----------GT--------------------------T-CTTGAGC-AA.....................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................GCCAGTGAAAGT-AATTGTGTGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TAACCCTAGCCTT------GTGTTTGAGT.............................................................................................................................2311.001000000000000000000000000000000010000000000000000000000000000000
.....TTCTCCGATGCCCGGGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................TGAGAG----------------AAAGTGCCAGTGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000100000000000000000000000000000000000000000000000000000
..................................................................................AAGTGCCAGTGAAAGT-AATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.............................................................AGAG----------------AAAGTGCCAGTGAAAGT-....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................CAGTGAAAGT-AATTGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................ATCT----------GT--------------------------T-CTTGAGC-AAACCCAA---------------AC..............................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TTGAT-----------C----------TTGATCT----------GT--------------------------T-CTT............................................................................................................................................................................................................................................................................................1911.001000001000000000000000000000000000000000000000000000000000000000
..........................................................................................GTGAAAGT-AATTGTGTGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................AACTTGAT-----------C----------TTGATCT----------GT--------------------------T-CTTGAGC-A......................................................................................................................................................................................................................................................................................2711.001000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AGCCTT------GTGTTTGAGTT-GTA........................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---AAAA--ACTGCGAAAAAAA-----------------------------------------------------1911.001000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................AAT-------------------------TAACCCTAGCCTT------GTGTT..................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................GCCAGTGAAAGT-AATTGTGTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................TT-----TCATGTTCTC---TTG-AGTTTT--GC--A..........................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TAACCCTAGCCTT------GTGTTTGA...............................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................CTTCAACTTGAT-----------C----------TTGAT.........................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................ACTAACAGC--TCGAGGTTCTACG-GAT................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TAGCCTT------GTGTTTGAGTT-GTATTCC....................................................................................................................2511.001000000000000000000000000000000000000000100000000000000000000000
.............................................AGCTGGTCCAGCACTGAGAG----------------AAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................GC--TCGAGGTTCTACG-GAT................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................GCCAGTGAAAGT-AATTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................CTTGAT-----------C----------TTGATCT----------GT--------------------------T-CTTG...........................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
...........................................................................................TGAAAGT-AATTGTGTGCGTGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................T-AATTGTGTGCGTGTGCGT..................................................................................................................................................................................................................................................................................................................................................................................................................1920.501001000000000000000000000000000000000000000000000000000000000000
...................................................TCCAGCACTGAGAG----------------AAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.331000000001000000000000000000000000000000000000000000000000000000
...................................................................................................AATTGTGTGCGTGTGCGT..................................................................................................................................................................................................................................................................................................................................................................................................................1850.201000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................TTGTGTGCGTGTGCGTGTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................21180.061000000000100000000000000000000000000000000000000000000000000000
droMoj3
GAAACTTCTCCGATCCGAGGGATTATGCCGAGGCCAATCGCTTCAAGTTGGTGCAGT---GAGAGGGGCGGGAGG------AAATGGATATTGAAAGTGAATTGTGAATATTT-TGT-ATTGTACTAACAGAGCT-----TTTTATGAGATC----------------------------------TATTATCCTATCT---GA--------------------------TCT---------T--CACACTAA-T--------CAC-----AATCTTGATAAA---------T----T-----TCATGTTCTC---TTG-AGTTTT--GC--ATTGAAA----------------------T---TAACCTAAGCGT------TGTATTTGA-------------------GTTATTTATTT-----TTATTTTTAATAAAAAA---C--------------------------AATTGT-------GAAATGACACAAA-------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................AACAGAGCT-----TTTTATGAGATC----------------------------------.............................................................................................................................................................................................................................................................................................................................................2111.001000001
.......................................................................................................................TTGTACTAACAGAGCT-----TTTT.......................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
............................................................GAGAGGGGCGGGAGG------AAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..........................................................................................................AATATTT-TGT-ATTGTACTAACAGAG..................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
............................................................................................................................CTAACAGAGCT-----TTTTATGA...................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
GAAACTTCTCCGATCCGAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
droGri2
GCAACTTCTCCGATCCAAGGGATTATGCCGAGGCGAAGCGCTTCAAATTGGTCCAGCATTGAGAAAGTGA----A------AGTTC--------------------------GGCATCCTTCTACTAACAAC---------------------------------------------GTTG----CT------------------------GGAAGTTCAACTAGATCATTCC----TC-------AAACAAAAGCACCACCAACTAATTG----CATT-ATA---------T----T-----TCATGTTCTC---TTG-AGTTTTTTGCAAATTGA-T---------------------AT---TAACTTAAGT-TTT--GTACTATTTCAGTTCGTATTTTTATC----GATATTTATTG-----TTACATTTAATAAAAAA---AATCA-------ATTGTGA---GAAAAAACCCAGAAA---AATATGCTTGAAAGTTGTTGTT--TTGCA---SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................TTCTC---TTG-AGTTTTTTGCAA...........................................................................................................................................................................................2011.00110
...............................................................AAAGTGA----A------AGTTC--------------------------GGCATCCTTCTA...........................................................................................................................................................................................................................................................................................................................................................................................................2511.00101
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------ATTGTGA---GAAAAAACCCA.......................................1920.50110

Generated: 05/19/2015 at 05:31 AM