ID:

dsi_18569

 Coordinate:

3r:4350926-4351075 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-8.4 -8.1 -8.1

Flybase annnotation

CDS [3r_4351076_4351298_+]; exon [3r_4351076_4351298_+]; intron [3r_4349516_4351075_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGGGTCGTCGGTAGGCTAAACTAAAGAAAAGTTGCACAACCAGCAGCTACCTACTTTTCCAGTTTTAACGATCGCCCCTTGACATCCAAGCACCCCATAACACATCATCATCGCCCCACAACAACACACAACAACAACGAAACGGAACAAATGCAATCTTATAATTAATTTGCTTCTTATTCCACTTTTCACCCGTACAGTTCACAACCACTATGCTGTACGACCCGGTGCGCAAGAAAGACTCATCGCC
**************************************************...........................((((.....))))................................................((((.((((.....((((..(((....))).))))......))))...))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
........................................................................................................................................................................................................TTCACAACCACTATGCTGTACGACCCGGTGC................... 31 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................CTGTACGACCCGGTGCGCAAGAAA........... 24 0 1 1.00 1 0 0 1 0 0
............................................................................................................................................AACGGAACAAATGCAATCTT.......................................................................................... 20 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................................................GCTTCTTAATCAACCTTTCA........................................................... 20 3 7 0.14 1 0 0 0 0 1
TGGGTCATCGTTAGGCT......................................................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 1 0
...............................................................................................................................................................................................CCCGTACTGTTCACCA........................................... 16 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

ACCCAGCAGCCATCCGATTTGATTTCTTTTCAACGTGTTGGTCGTCGATGGATGAAAAGGTCAAAATTGCTAGCGGGGAACTGTAGGTTCGTGGGGTATTGTGTAGTAGTAGCGGGGTGTTGTTGTGTGTTGTTGTTGCTTTGCCTTGTTTACGTTAGAATATTAATTAAACGAAGAATAAGGTGAAAAGTGGGCATGTCAAGTGTTGGTGATACGACATGCTGGGCCACGCGTTCTTTCTGAGTAGCGG
**************************************************...........................((((.....))))................................................((((.((((.....((((..(((....))).))))......))))...))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR902009
testis
................................................TGGATGAGAAGGTCA........................................................................................................................................................................................... 15 1 3 0.67 2 0 2 0 0 0 0
...............................................................................................................GCCGGGTGTTATTGTGAGTTG...................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0
.....................................TAGGCCGTCGATGGATGA................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0
....................................................................................................................................................................................................................TACGACATGATGGGC....................... 15 1 5 0.20 1 1 0 0 0 0 0
...................................TCTTGGTCGCCGCTGGATGA................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 1 0 0 0
...........................................................................GGGACCAGTAGGTTCGT.............................................................................................................................................................. 17 2 6 0.17 1 1 0 0 0 0 0
...................................TCTTGATCGTCGCTGGATGA................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0
...................................................................................................................................................................................................ATGTAAAGTGTTGGTG....................................... 16 1 9 0.11 1 1 0 0 0 0 0
.................................................................................................................GGGGTGTTGTTTTGTCTTATT.................................................................................................................... 21 3 11 0.09 1 0 0 0 1 0 0
........................................................................................................................TGTTGTGTGTTGTTTTTG................................................................................................................ 18 1 11 0.09 1 1 0 0 0 0 0
.....................................................................................................................................................................................................GTAAAGTGTTGGTGGTAC................................... 18 2 11 0.09 1 0 0 0 0 1 0
........................TTCTTTCAACGTGTTGTTCGT............................................................................................................................................................................................................. 21 3 12 0.08 1 0 0 0 0 1 0
............................................TCGATGGATGACGAGGT............................................................................................................................................................................................. 17 2 12 0.08 1 1 0 0 0 0 0
..............................................................................................................CGCGGGGTGTTGTGGCGTGT........................................................................................................................ 20 3 15 0.07 1 0 0 1 0 0 0
..............................................................................AACTGTAAGTTCGTG............................................................................................................................................................. 15 1 16 0.06 1 0 0 0 1 0 0
............................................TCGATGGATGACGAGGTA............................................................................................................................................................................................ 18 3 20 0.05 1 0 1 0 0 0 0
............................................................................................................................................................................................................TTTGGTGACACGACAGGCT........................... 19 3 20 0.05 1 0 0 0 0 0 1
.............................................................................................AGGTATTGTGTCGTAG............................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0 0

Generated: 04/24/2015 at 02:26 AM