ID:dsi_18563 |
Coordinate:2r:5563253-5563402 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
CDS [2r_5563403_5563480_+]; exon [2r_5563403_5563480_+]; intron [2r_5562462_5563402_+]
No Repeatable elements found
| --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GGTTCAGTTTCTTCTTTGCTTGACTGTACTCCATAGATCTAACCATCAGCAACCACGAGCACTTGCATCCTAACTTCGTGAATACGTAACACTTTCCACTGTTATGCAGTAGTTTGTAGATTGTAGTCTTACCAATCCCTAGAACCAGCTGTCTGTAGACAGAGCTAACACTTTCTAATGGCTTTTCCACAAATTCCTAGGGCAAAGGCACAGGATCGGGACACAGGACATTGCTCTATGGCAATGCCAT **************************************************...(((((((....)).........)))))....(((((((........)))))))((((.((((...(((((.........)))))....))))..))))..(((.((.(((((((...........))))))))).))).........************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M025 embryo |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................................................................GGCAAAGGCACAGGATCGGGACACA......................... | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................GCACAGGATCGGGACACAGGACATT.................. | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ......................................................................................................TATTAAGTAGTTTGTAAATTGTA............................................................................................................................. | 23 | 3 | 3 | 0.67 | 2 | 0 | 2 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................GGTAAAGGCACCGGAT.................................. | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 |
| ...............................................................................................................GTTTGTATATTGTAG............................................................................................................................ | 15 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 |
| .................................................................GATCCTAACTTCGGGA......................................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 |
| ...........................................................................TCGTGTATACGTCACA............................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 |
| ......................................................................................................................................................GTCTTGAGACAGAGCT.................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 |
| ..................................................................CTCCTAACTTCGGGAA........................................................................................................................................................................ | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 |
|
CCAAGTCAAAGAAGAAACGAACTGACATGAGGTATCTAGATTGGTAGTCGTTGGTGCTCGTGAACGTAGGATTGAAGCACTTATGCATTGTGAAAGGTGACAATACGTCATCAAACATCTAACATCAGAATGGTTAGGGATCTTGGTCGACAGACATCTGTCTCGATTGTGAAAGATTACCGAAAAGGTGTTTAAGGATCCCGTTTCCGTGTCCTAGCCCTGTGTCCTGTAACGAGATACCGTTACGGTA
**************************************************...(((((((....)).........)))))....(((((((........)))))))((((.((((...(((((.........)))))....))))..))))..(((.((.(((((((...........))))))))).))).........************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
M023 head |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................ATCTAACATCAGTAAGGTT................................................................................................................... | 19 | 2 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 |
| .................................................................................................................................ATGCCTAGGGATCTTGGTC...................................................................................................... | 19 | 2 | 4 | 0.25 | 1 | 0 | 1 | 0 | 0 |
| ......................................................................................................................................TAGGGATCTTGGTCTGC................................................................................................... | 17 | 2 | 8 | 0.25 | 2 | 1 | 1 | 0 | 0 |
| ........................................................CTCGTGATCGTAGGTTTAAA.............................................................................................................................................................................. | 20 | 3 | 6 | 0.17 | 1 | 0 | 0 | 1 | 0 |
| ......................................................................................................................................TAGGGATCTTGGTCT..................................................................................................... | 15 | 1 | 8 | 0.13 | 1 | 0 | 1 | 0 | 0 |
| ....................................................GGTACTCTTGATCGTAGGA................................................................................................................................................................................... | 19 | 3 | 8 | 0.13 | 1 | 0 | 1 | 0 | 0 |
| ................................................................................................................................AATGCCTAGGGATCTTG......................................................................................................... | 17 | 2 | 8 | 0.13 | 1 | 1 | 0 | 0 | 0 |
| ...............................................................................................................................AAATGTCTAGGGATCTTGGT....................................................................................................... | 20 | 3 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 |
| ....................................................................................................................................................GACAGAGTGCTGTCTCGA.................................................................................... | 18 | 3 | 19 | 0.11 | 2 | 0 | 0 | 0 | 2 |
| ............................................................................................................................................TCTTGGTCGATAGAGGTCT........................................................................................... | 19 | 3 | 14 | 0.07 | 1 | 1 | 0 | 0 | 0 |
| .................................................................................................................................ATGCCTAGGGATCTTG......................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 |
Generated: 04/23/2015 at 04:42 PM