ID:

dsi_18550

Coordinate:

3l:15703245-15703394 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-4.4	-4.2	-3.5

Flybase annnotation

CDS [3l_15703395_15703734_+]; exon [3l_15703395_15703734_+]; intron [3l_15702803_15703394_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACAGAAACATCTGGCACAAGGGGGCGGAAATGCTTTCAATTGTAATTCAACGTACAGATGTGTGTATTATTTGAACGGTGTCGCTGTGTCCGAGATCTTAATCTTATCATTGCGTATGCATAAACAAAGCGTAGAGGCTAGCTAGCTCTCCAAATTCACAAACCTTATCTTATAGCTTTTCGCTTATTTCGCTTTTTCAGTCGAACGGCCACACAAACGGAGCCGGCGGCGACGGTGACCTAGACGGAAC *************************************************************.............(((.(((.......))).)))...........********************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M024 male body	O001 Testis	O002 Head	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
...............................................................GTATTATTTGAACGGTGTCGCT.....................................................................................................................................................................	22	0	1	2.00	2	0	2	0	0	0	0	0
..........................................................TGTGTGTATTGTTTGAACGGTG..........................................................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................CACACAAACGGAGCCGGC.......................	18	0	1	1.00	1	0	0	1	0	0	0	0
..........................................................................................CGAGATCTTAATCTTATC..............................................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0
............................................................TGTGTATTATTTGAACGGTGT.........................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
....................................................................ATTTGAACGGTATCGCT.....................................................................................................................................................................	17	1	2	0.50	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................CGGCGGCGACGGCGACCTGGA......	21	2	2	0.50	1	1	0	0	0	0	0	0
...............................................................................GTCGCTTTGTCCGAG............................................................................................................................................................	15	1	5	0.20	1	0	0	0	0	0	1	0
........ATCTGGCACGAGGTCGCGGA..............................................................................................................................................................................................................................	20	3	5	0.20	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................GGCGACGGTGGTCGAGACGGA..	21	3	6	0.17	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................ACGGGGTCGGCGGCGAC.................	17	2	17	0.12	2	0	0	0	0	0	1	1

Anti-sense strand reads

TGTCTTTGTAGACCGTGTTCCCCCGCCTTTACGAAAGTTAACATTAAGTTGCATGTCTACACACATAATAAACTTGCCACAGCGACACAGGCTCTAGAATTAGAATAGTAACGCATACGTATTTGTTTCGCATCTCCGATCGATCGAGAGGTTTAAGTGTTTGGAATAGAATATCGAAAAGCGAATAAAGCGAAAAAGTCAGCTTGCCGGTGTGTTTGCCTCGGCCGCCGCTGCCACTGGATCTGCCTTG ********************************************************************************************************************************************.............(((.(((.......))).)))...........*************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	M023 head	M025 embryo	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.........................................................................................................................TCTGTTTCGGATCTCCGAT..............................................................................................................	19	2	2	5.00	10	5	0	2	1	1	1	0	0
.....................................................................................................................................................................................................GTCAGCTTGCCGGTGTGTTT.................................	20	0	1	2.00	2	0	2	0	0	0	0	0	0
........................................................................................................................ATCTGTTTCGGATCTCCGAT..............................................................................................................	20	2	2	1.00	2	0	0	1	0	0	0	1	0
.........................................................................................................................TCTGTTTCTCATCTCCGAT..............................................................................................................	19	2	2	0.50	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CCGGGCCGCCGCTGCCAC.............	18	2	4	0.25	1	0	0	0	1	0	0	0	0
.......................................................................................................................AATCTGTTTCGGATCTCCGAT..............................................................................................................	21	3	4	0.25	1	0	0	0	0	0	0	0	1
...................................................................................................................TGCGTATTTGTTTCGCAA.....................................................................................................................	18	2	9	0.11	1	1	0	0	0	0	0	0	0
.........................................................................................................................ACTGTTTCGGATCTCCGAT..............................................................................................................	19	3	17	0.06	1	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CCGGTGTGTTTGCCCTGGA.........................	19	3	20	0.05	1	1	0	0	0	0	0	0	0
.........................................................................................................................TCTGTTTGTCATCTCCGAT..............................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0	0	0

Generated: 04/23/2015 at 06:14 PM