ID:

dsi_18536

 Coordinate:

2l:21021760-21021909 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.9 -9.9 -9.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Helena_DsLINEJockey+
mature
  1. 2l:19701035-19701060 +
  2. dsi_18536  2l:21021844-21021869 -
  3. 2l:22037890-22037915 +
  4. 3l:23628874-23628899 +
  5. 3l:23955561-23955586 -
  6. 3l:24091145-24091170 +
  7. node_116027:4255-4280 +
star
  1. 2l:19701095-19701121 +
  2. dsi_18536  2l:21021783-21021809 -

Sense Strand Reads

ATCCACTGTTGTTTGTTGTTGTCCATATGCCGACTCTGCAAGACAGAGTCCAAAGTTTAGAATGCGTGCTGTTTTGCACAGCAACGACTGCAGGTTTGCGACTAAAGTTAAAGAGATTTATAATCTTATTATCGAAATTTTTATTCGATTTTGATCACCGAACTTTACTTCAATGCAAGCTACAATTCTGTTTTCAACAGGTTAAAGACAAACCCACCGTTGATCAATTCATATCGATGAATCGTGGCAT
******************************************************************************************.(((((((.((.(((((((..(((((((((((((...)))))..))))))))....))))))).))..)))))))............************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 O001
Testis
 M053
female body
 SRR902008
ovaries
 SRR902009
testis
 M025
embryo
 O002
Head
 GSM343915
embryo
 M023
head
........TTGTTTGTTGTTGTCCATATGCCGA......................................................................................................................................................................................................................... 25 0 5 7.40 37 0 24 13 0 0 0 0 0 0 0 0 0 0
.TCCACTGTTGTTTCTTGTTGTCCATA............................................................................................................................................................................................................................... 26 1 5 2.60 13 8 0 0 5 0 0 0 0 0 0 0 0 0
.TCCACTGTTGTTTGTTGTTGTCCATA............................................................................................................................................................................................................................... 26 0 5 2.40 12 2 9 1 0 0 0 0 0 0 0 0 0 0
............TTGTTGTTGTCCATATGCCGACTC...................................................................................................................................................................................................................... 24 0 6 1.67 10 0 0 0 0 7 0 1 0 0 2 0 0 0
............TTGTTGTTGTCCATATGCC........................................................................................................................................................................................................................... 19 0 6 1.50 9 0 0 0 0 0 9 0 0 0 0 0 0 0
..........................................................................................CAGGTTTGCGACTAAAGTTAAAGAGA...................................................................................................................................... 26 0 7 1.43 10 7 0 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................GCAGGTTTGCGACTAAAGTTAAAGAGA...................................................................................................................................... 27 0 7 1.43 10 10 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGCAGGTTTGCGACTAAAGTTAAAGA........................................................................................................................................ 26 0 10 1.30 13 2 2 5 1 1 0 1 1 0 0 0 0 0
........................................................................................TGCAGGTTTGCGACTAAAGTTAAAGAGA...................................................................................................................................... 28 0 7 1.29 9 4 2 1 2 0 0 0 0 0 0 0 0 0
......TGTTGTTTCTTGTTGTCCATATGGCGA......................................................................................................................................................................................................................... 27 2 5 1.00 5 4 0 0 1 0 0 0 0 0 0 0 0 0
.........TGTTTGTTGTTGTCCATA............................................................................................................................................................................................................................... 18 0 5 1.00 5 0 0 0 0 0 5 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CATATCGATGAATCGTGG... 18 0 2 1.00 2 0 0 0 0 0 0 1 0 0 0 0 1 0
.........TGTTTCTTGTTGTCCATATGGCGA......................................................................................................................................................................................................................... 24 2 5 1.00 5 2 0 0 3 0 0 0 0 0 0 0 0 0
..................................TCTGCAAGACAGAGTCCAAAGTTTAGAA............................................................................................................................................................................................ 28 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CAGGTTTGCGACTAAAGTTAAAGAGATT.................................................................................................................................... 28 0 7 1.00 7 4 0 3 0 0 0 0 0 0 0 0 0 0
.........TGTTTGTTGTTGTCCATATGCCGA......................................................................................................................................................................................................................... 24 0 5 1.00 5 0 3 1 1 0 0 0 0 0 0 0 0 0
..................................................................................AACGACTGCAGGTTTGCGACTAAAGT.............................................................................................................................................. 26 0 10 0.90 9 0 0 1 0 2 0 3 1 0 2 0 0 0
..................................................................................AACGACTGCAGGTTTGCGACTAAA................................................................................................................................................ 24 0 10 0.90 9 0 0 1 0 0 7 0 0 1 0 0 0 0
.....................................................................TGTTTTGCACAGCAACGACTGCAGG............................................................................................................................................................ 25 0 8 0.88 7 1 2 1 3 0 0 0 0 0 0 0 0 0
............TTGTTGTTGTCCATATGCCGACT....................................................................................................................................................................................................................... 23 0 6 0.83 5 0 2 0 0 3 0 0 0 0 0 0 0 0
.................................................................................CAACGACTGCAGGTTTGCGACT................................................................................................................................................... 22 0 10 0.80 8 0 0 0 0 0 0 0 0 0 0 8 0 0
.................................................................................CAACGACTGCAGGTTTGCGACTAA................................................................................................................................................. 24 0 10 0.80 8 0 1 0 0 0 7 0 0 0 0 0 0 0
..................................................................TGCTGTTTTGCACAGCAACGACTGCAGG............................................................................................................................................................ 28 0 7 0.71 5 1 0 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................GCAGGTTTGCGACTAAAGTTAAAGAGATT.................................................................................................................................... 29 0 7 0.71 5 5 0 0 0 0 0 0 0 0 0 0 0 0
.........TGTTTGTTGTTGTCCATATGCCGAC........................................................................................................................................................................................................................ 25 0 5 0.60 3 0 0 0 0 2 0 1 0 0 0 0 0 0
........TTGTTTGTTGTTGTCCATATGCCGACT....................................................................................................................................................................................................................... 27 0 5 0.60 3 0 0 2 1 0 0 0 0 0 0 0 0 0
............................................................................................GGTTTGCGACTAAAGTTAAAGAGATT.................................................................................................................................... 26 0 7 0.57 4 1 0 3 0 0 0 0 0 0 0 0 0 0
..........................................................................................CAGGCTTGCGACTAAAGTTAAAGAGA...................................................................................................................................... 26 1 7 0.57 4 3 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGCAGGTTTGCGACTAAAGTTAAAGAGATT.................................................................................................................................... 30 0 7 0.57 4 2 2 0 0 0 0 0 0 0 0 0 0 0
................TGTTGTCCATATGCCGACTCTGCAAG................................................................................................................................................................................................................ 26 0 7 0.57 4 0 1 2 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTGATCACCGAACTTTACTTCAATGCA......................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATCAATTCATATCGATGAATCGTGGCA. 27 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................AGAGTCAAAAGTTTAGAATGCGT....................................................................................................................................................................................... 23 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................TCTGCAAGACAGAGTCCAAAGTTTAGA............................................................................................................................................................................................. 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................CAGAGTCCAAAGTTTAGAATGCATG...................................................................................................................................................................................... 25 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................CAGAGTCCAAAGTTTAGAATGCATGCTG................................................................................................................................................................................... 28 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGCAGGCTTGCGACTAAAGTTAAAGAGA...................................................................................................................................... 28 1 7 0.43 3 2 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................GCAGGCTTGCGACTAAAGTTAAAGAGA...................................................................................................................................... 27 1 7 0.43 3 3 0 0 0 0 0 0 0 0 0 0 0 0
........TTGTTTGTTGTTGTCCATATGCCGAC........................................................................................................................................................................................................................ 26 0 5 0.40 2 0 1 1 0 0 0 0 0 0 0 0 0 0
......TGTTGTTTCTTGTTGTCCATATGG............................................................................................................................................................................................................................ 24 2 5 0.40 2 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................CAGGTTTGCGACTAAAGTTAAAGA........................................................................................................................................ 24 0 10 0.40 4 3 0 1 0 0 0 0 0 0 0 0 0 0
......TGTTGTTTGTTGTTGTCCATATGCCGA......................................................................................................................................................................................................................... 27 0 5 0.40 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................GTCCAAAGTTTAGAATGCGTGCTGTTTA............................................................................................................................................................................... 28 1 6 0.33 2 0 0 0 2 0 0 0 0 0 0 0 0 0
............TTGTTGTTGTCCATATGCCGACTCTGC................................................................................................................................................................................................................... 27 0 6 0.33 2 0 0 0 0 0 0 2 0 0 0 0 0 0
................................................TCCAAAGTTTAGAATGCATGCTGTT................................................................................................................................................................................. 25 1 6 0.33 2 0 0 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGTTCAACAGGTTGCAGACAAA...................................... 22 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................AACGACTGCAGGTTTGCGACTAAAG............................................................................................................................................... 25 0 10 0.30 3 0 0 0 0 2 0 1 0 0 0 0 0 0
..................................................................TGCTGTTTTGCACAGCAACGACTGCAGGCT.......................................................................................................................................................... 30 1 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGCGACTAAAGTTAAAGAGATTTATA................................................................................................................................ 26 0 7 0.29 2 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................TGCGACTAAAGTTAAAGAGATTTATAA............................................................................................................................... 27 0 7 0.29 2 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................TGCGACTAAAGTTAAAGAGATT.................................................................................................................................... 22 0 7 0.29 2 0 0 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................CAGGTTTGCGACTAAAGTTAAAGAG....................................................................................................................................... 25 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GCAGGTTTGCGACTAAAGTTAAAGAG....................................................................................................................................... 26 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................TGTTGTCCATATGCCGACTCTGCA.................................................................................................................................................................................................................. 24 0 7 0.29 2 0 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................TGTTTTGCACAGCAACGACTGCAGGC........................................................................................................................................................... 26 1 8 0.25 2 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................TGTTTTGCACAGCAACGATTGCAGG............................................................................................................................................................ 25 1 8 0.25 2 0 1 1 0 0 0 0 0 0 0 0 0 0
........................................................TTAGAATGCGTGCTGTTTTGCACA.......................................................................................................................................................................... 24 0 17 0.24 4 4 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................ATTTTGATCACCGAACTTTAC.................................................................................. 21 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......TGTTGTTTGTTGTTGTCCATATG............................................................................................................................................................................................................................. 23 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........TTGTTTGTTGTTGTCCATATGC............................................................................................................................................................................................................................ 22 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.........TGTTTCTTGTTGTCCATATGGCGAC........................................................................................................................................................................................................................ 25 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.TCCACTGTTGTTTGTTGTTGTCCATAT.............................................................................................................................................................................................................................. 27 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........TTTCTTGTTGTCCATATGGCGAC........................................................................................................................................................................................................................ 23 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........TTTGTTGTTGTCCATATGCCGAC........................................................................................................................................................................................................................ 23 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......TGTTGTTTGTTGTTGTCCATATGCC........................................................................................................................................................................................................................... 25 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..CCACTGTTGTTTCTTGTTGTCCATA............................................................................................................................................................................................................................... 25 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........TTGTTTGTTGTTGTCCATATGCC........................................................................................................................................................................................................................... 23 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................AACGACTGCAGGTTTGCGACTA.................................................................................................................................................. 22 0 10 0.20 2 0 0 0 0 0 0 0 1 1 0 0 0 0
.........................................................................................GCAGGTTTGCGACTAAAGTTAAAGA........................................................................................................................................ 25 0 10 0.20 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..TCACTGTTGTTTGTTGTTGTCCATA............................................................................................................................................................................................................................... 25 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................CTAGAATGCGTGCTGTTTTGCACAGC........................................................................................................................................................................ 26 1 16 0.19 3 3 0 0 0 0 0 0 0 0 0 0 0 0
...............................................GTCCAAAGTCTAGAATGCGTGCTGTT................................................................................................................................................................................. 26 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............TTGTTGTTGTCCATATGCCGACTCTGCA.................................................................................................................................................................................................................. 28 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........TTGTTTGTTGTTTTCCATATGCCGA......................................................................................................................................................................................................................... 25 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............TTGTTGTTGTCCATATGCCGAC........................................................................................................................................................................................................................ 22 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................GTCCAAAGTTTAGAATGCATGCTG................................................................................................................................................................................... 24 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................GTCCAAAGTTTAGAATGCATGCTGT.................................................................................................................................................................................. 25 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.TCCACTGTTGTTTCTTGTTGTCCA................................................................................................................................................................................................................................. 24 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....ACTGTTGTTTGTTGTTGTCC.................................................................................................................................................................................................................................. 20 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............TTATTGTTGTCCATATGCCGACTC...................................................................................................................................................................................................................... 24 1 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................CCAAAGTCTAGAATGCGTGCTGTTTT............................................................................................................................................................................... 26 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................TCCAAAGTTTAGAATGCGTGCTGT.................................................................................................................................................................................. 24 0 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................GTCCAAAGTTTAGAATGCATGCTGTT................................................................................................................................................................................. 26 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............TTGTTGTTGTCCATATGCCGTT........................................................................................................................................................................................................................ 22 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............TTGTTGTCCATATGCCGACTCTGCA.................................................................................................................................................................................................................. 25 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.TCCACTGTTGTTTGTTGTTGTCCA................................................................................................................................................................................................................................. 24 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............TTGTTGTTGTCCATATGC............................................................................................................................................................................................................................ 18 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................CCAAAGTTTAGAATGCATGCTGTTTCGC............................................................................................................................................................................. 28 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................CAAAGTTTAGAATGCGTGCTGTTT................................................................................................................................................................................ 24 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCCAAAGTTTAGAATGCGTGCTGTT................................................................................................................................................................................. 25 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................AAGTTTAGAATACGTGCTGGT................................................................................................................................................................................. 21 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................GTCCAAAGTTTAGAA............................................................................................................................................................................................ 15 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................CGACTAAAGTTAAAGAGATTTATAATCT............................................................................................................................ 28 0 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................TGTTGTCCATATGCCGACTCTGCAA................................................................................................................................................................................................................. 25 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGCAGATTTGCGACTAAAGTTAAAGAGA...................................................................................................................................... 28 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTTGCGACTAAAGTTAAAGAGATTTA.................................................................................................................................. 26 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TAAAGAGATTTATAATCTTA.......................................................................................................................... 20 0 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................TTTGCGACTAAAGTTAAAGAGATT.................................................................................................................................... 24 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................GTTGTCCATATGCCGACTCTGCAAG................................................................................................................................................................................................................ 25 0 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0
................TGTTGTCCATATGCCGA......................................................................................................................................................................................................................... 17 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TGTGCGACTAAAGTTAAAGAGATT.................................................................................................................................... 24 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................TGCGACTAAAGTTAAAGAGA...................................................................................................................................... 20 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................TGCTGTTTTGCACAGCAACGACTGCAGGC........................................................................................................................................................... 29 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGCGACTAAAGTTAAAGAGATTTATAAA.............................................................................................................................. 28 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................TTGCGACTAAAGTTAAAGAGATTTATA................................................................................................................................ 27 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................AAGGTTTACGACTAAAGTTAAAGGGA...................................................................................................................................... 26 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGCTGTTTTGCACAGCAACGATTGCAGG............................................................................................................................................................ 28 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TAAAGTTAAAGAGATCTATAATCTTA.......................................................................................................................... 26 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................TTACGACTAAAGTTAAAGGGATTTAT................................................................................................................................. 26 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............ATGTTGTCCATATGCCGA......................................................................................................................................................................................................................... 18 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................TTTGCGACTAAAGTTAAAGAGATTTATAAT.............................................................................................................................. 30 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TGGCGACTAAAGTTAAAGAGATT.................................................................................................................................... 23 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................TGTTGTCCATATGCCGAC........................................................................................................................................................................................................................ 18 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................AGGCTTGCGACTAAAGTTAAAGAGA...................................................................................................................................... 25 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................TGTTGTCCATATGCCGACTCTGC................................................................................................................................................................................................................... 23 0 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................TGCGACTAAAGTTAAAGAGATTT................................................................................................................................... 23 0 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................TTGCACAGCAACGACTGCAGGCTTGCGACA................................................................................................................................................... 30 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................TATTGTCCATATGCCGACTCTGCA.................................................................................................................................................................................................................. 24 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TGCACAGCAACGACTGCAGGTTTGCGA..................................................................................................................................................... 27 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TGCACAGCAACGACTGTAGGTTTG........................................................................................................................................................ 24 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AAGGCAGAGTCCAAAGTTTAGAATGCA........................................................................................................................................................................................ 27 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TGTTTTGCACAGCAACGACTGCAGGTT.......................................................................................................................................................... 27 0 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................TTTGCACAGCAACGACTGCAGGTT.......................................................................................................................................................... 24 0 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................CAAGGCAGAGTCCAAAGTTTAGAATGCA........................................................................................................................................................................................ 28 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................TGCACAGCAACGACTGCAGGTTTGCGACT................................................................................................................................................... 29 0 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................TGCACAGCAACGACTGCAGGTTTGCGAC.................................................................................................................................................... 28 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TTAGAATGCGTGCTGTTTTGCACAT......................................................................................................................................................................... 25 1 17 0.12 2 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGCAGGTTTGCGACTAAAGTTAAAGAAA...................................................................................................................................... 28 1 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............TGGTGTGGTCCAGATGCCGA......................................................................................................................................................................................................................... 20 3 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGCAGGCTTGCGACTAAAGTTAAAGA........................................................................................................................................ 26 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CAGGTTTGCGACTAAAGTTAAAGT........................................................................................................................................ 24 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................GGTTTGCGGCTAAAGT.............................................................................................................................................. 16 1 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................AACGACTGCAGGTTTGCGACTAT................................................................................................................................................. 23 1 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................TAGGTTTGCGACTAAAGTTAAAGA........................................................................................................................................ 24 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AACGACTGCAGGTTTGCGACTAAAT............................................................................................................................................... 25 1 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................AACGACTGCAGGTTTGCGACTAA................................................................................................................................................. 23 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GCAGGTTTGCGACTAAAGTTAAAG......................................................................................................................................... 24 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AACGACTGCAGGTTTGCGACTATTT............................................................................................................................................... 25 3 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................AACGACTGCAGGCTTGCGACTAAA................................................................................................................................................ 24 1 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................TGCAGGTTTGCGACTAAAGTTAAAG......................................................................................................................................... 25 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................GCAACGACTGCAGGTT.......................................................................................................................................................... 16 0 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................TCTAGAATTCGTGCTGTTTTGCACAGC........................................................................................................................................................................ 27 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTTAGAATGCGTGCTGTTTTGCACAG......................................................................................................................................................................... 26 0 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................CTAGAATGCGTGCTGTTTTGCACAG......................................................................................................................................................................... 25 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................ATGCGTGCTGTTTTGCACAGC........................................................................................................................................................................ 21 0 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................CTAGAATGCGTGCTGTTTTGCACA.......................................................................................................................................................................... 24 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TAGAATGCGTGCTGTTTTGCACAGT........................................................................................................................................................................ 25 1 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........TTTGTTGTTGTCAATA............................................................................................................................................................................................................................... 16 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAGGTGACAACAAACAACAACAGGTATACGGCTGAGACGTTCTGTCTCAGGTTTCAAATCTTACGCACGACAAAACGTGTCGTTGCTGACGTCCAAACGCTGATTTCAATTTCTCTAAATATTAGAATAATAGCTTTAAAAATAAGCTAAAACTAGTGGCTTGAAATGAAGTTACGTTCGATGTTAAGACAAAAGTTGTCCAATTTCTGTTTGGGTGGCAACTAGTTAAGTATAGCTACTTAGCACCGTA
*************************************************************************.(((((((.((.(((((((..(((((((((((((...)))))..))))))))....))))))).))..)))))))............****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 O002
Head
 M024
male body		 SRR902009
testis
 M053
female body
 M023
head
.........................................CTGTCTCAGGTTTCAAATCTTACGC........................................................................................................................................................................................ 25 0 2 2.00 4 3 1 0 0 0 0 0 0 0 0 0 0 0
...........................................GTCTCAGGTTTCAGATCTTACGC........................................................................................................................................................................................ 23 1 2 1.50 3 2 0 1 0 0 0 0 0 0 0 0 0 0
..................................AGACGTTCTGTCTCAGGTTTCAAAT............................................................................................................................................................................................... 25 0 2 1.50 3 0 0 0 0 3 0 0 0 0 0 0 0 0
.AGGTGACAACAAACAACAACAGGTAT............................................................................................................................................................................................................................... 26 0 5 1.20 6 3 0 0 0 0 2 1 0 0 0 0 0 0
.......................................TTCTGTCTCAGGTTTCAAATCTTACGC........................................................................................................................................................................................ 27 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.AGGTGACAACAAACAACAACA.................................................................................................................................................................................................................................... 21 0 7 1.00 7 0 0 0 0 0 0 0 7 0 0 0 0 0
..................................................................ACGACAAAACGTGTCGTTGCTGACGT.............................................................................................................................................................. 26 0 7 0.86 6 3 2 0 1 0 0 0 0 0 0 0 0 0
...GTGACAACAAACAACAACAGGTATAC............................................................................................................................................................................................................................. 26 0 5 0.80 4 0 4 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ACGTCCAAACGCTGATTTCAATTTC......................................................................................................................................... 25 0 10 0.70 7 6 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGTCCAAACGCTGATTTCAATTTC......................................................................................................................................... 24 0 10 0.70 7 7 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CGACAAAACGTGTCGTTGCTGACGT.............................................................................................................................................................. 25 0 8 0.63 5 0 5 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATTTCTGTTTGGGTGGCAACT........................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................CAGGTATACGGCTGAGACGTTCTGT............................................................................................................................................................................................................. 25 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AATGAAGTTACGTTCGAT.................................................................... 18 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................TTCTGTCTCAGGTTTCAAATCTT............................................................................................................................................................................................ 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GGGGTGGCAACTAGTTAAGTA.................. 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................TTCTGTCTCTGGTTTCAAATCTTACG......................................................................................................................................................................................... 26 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................TCTCAGGTTTCAGATCTTACGC........................................................................................................................................................................................ 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TTCTCTAAATATTAGAATAATAGCTTT................................................................................................................. 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................GACAAAACGTGTCGTTGCTGACGT.............................................................................................................................................................. 24 0 8 0.50 4 0 0 2 1 0 0 1 0 0 0 0 0 0
..................................GGACGTTCTGTCTCAGGTTTCAAAT............................................................................................................................................................................................... 25 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GAAGTTACGTTCGATGTTAAGACAAAAGT...................................................... 29 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TCAGGTTTCAAATCTTACGTACGACA.................................................................................................................................................................................. 26 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................GTCTCAGGTTTCAAATCTTACGT........................................................................................................................................................................................ 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TGTCTCAGGTTTCAAATCTTACGC........................................................................................................................................................................................ 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................AGACGTTCAGTCTCAGGTTTCAAAT............................................................................................................................................................................................... 25 1 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................TCTCAGGTTTCAAATCTTACGC........................................................................................................................................................................................ 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................AGGTTTCAAATCTTACGCACGACAAAA............................................................................................................................................................................... 27 0 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............AACAACAGGTATACGGCTGAGACGTT................................................................................................................................................................................................................. 26 0 6 0.33 2 0 0 0 0 0 1 0 0 0 0 1 0 0
...............................................................................TCGTTGCTGACGTCCAAACGCTG.................................................................................................................................................... 23 0 10 0.30 3 0 3 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ACGTCCAAACGCTGATTTCAATTTCT........................................................................................................................................ 26 0 10 0.30 3 2 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................ACGTCCAAACGCTGATTTCAATTTCTCT...................................................................................................................................... 28 0 7 0.29 2 0 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................CTAGTGGATTGAAAGCAAG............................................................................... 19 3 15 0.27 4 0 0 0 0 0 0 0 0 0 1 0 1 2
..................................................................................................................................................................................................................TTGCGTCGCAACTATTTAAGT................... 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AAGAAAAAATTTGTCCAATTTGT.......................................... 23 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CTAAAACTAGTGGCTTGAAATGA................................................................................. 23 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................ACGTCCAAACGCTGATTTCAATTT.......................................................................................................................................... 24 0 10 0.20 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....TGACAACAAACAACAACAGGTATAC............................................................................................................................................................................................................................. 25 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.AGGCGACAACAAACAACAACAGGTAT............................................................................................................................................................................................................................... 26 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........AACGAACAACAACAGGTATACGGCT......................................................................................................................................................................................................................... 25 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................ACGTCCACACGCTGATTTCAATTTCT........................................................................................................................................ 26 1 10 0.20 2 0 0 0 0 0 0 2 0 0 0 0 0 0
.AGGTGACAACAAACAACAACAGGTA................................................................................................................................................................................................................................ 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GTCGTTGCTGACGTCCAAACGCTGATTT................................................................................................................................................ 28 0 10 0.20 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.GGGTGACAACAAACAACAACAGGTAT............................................................................................................................................................................................................................... 26 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CTAAAACTAGTGGCTTGAAA.................................................................................... 20 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AAAACTAGTGGCTTGAA..................................................................................... 17 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....GACAACAAACAACAACAGGTATAC............................................................................................................................................................................................................................. 24 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.AGGTGACAACAAACAACAACAGGT................................................................................................................................................................................................................................. 24 0 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............CAACAACAGGTATACGGCTGAGACGT.................................................................................................................................................................................................................. 26 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............AACAACAACAGGTATACGGCTGAGACG................................................................................................................................................................................................................... 27 0 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............CAACAACAGGTATACGGCTGAGACGTT................................................................................................................................................................................................................. 27 0 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............AAGAACAACAGGTATACCGCTGACACGT.................................................................................................................................................................................................................. 28 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............GAACAACAGGTATACCGCTGACACGT.................................................................................................................................................................................................................. 26 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............CAACAACAGGTATACGGCTGAGACG................................................................................................................................................................................................................... 25 0 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................ACGTGCCGGTGCTGACG............................................................................................................................................................... 17 2 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0 0 0
................ACAACAGGTATACGGCTGAGACGT.................................................................................................................................................................................................................. 24 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................CAACAGGTATACGGCTGAGACGT.................................................................................................................................................................................................................. 23 0 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0
TAGGTGACAAAAAACAACAACA.................................................................................................................................................................................................................................... 22 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.................CAACAGGTATACGGCTGAGACGTT................................................................................................................................................................................................................. 24 0 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................GATTTCAATTTCTCTAAATAT................................................................................................................................ 21 0 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................GCACGACAAAACGTGTCGTTGCTGACGT.............................................................................................................................................................. 28 0 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................AAGACAAAACGTGTCGTTGCTGACGT.............................................................................................................................................................. 26 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................ACGCTGATTTCAATTTCTCTAAATATT............................................................................................................................... 27 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................CGCGACAAAACGTGTCGTTGCTGACGT.............................................................................................................................................................. 27 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................AAACGTGTCGTTGCTGACGTCCAAACGC...................................................................................................................................................... 28 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................GACAAAACGTGTCGTTGCTGACG............................................................................................................................................................... 23 0 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................CAAAACGTGTCGTTGCTGACGTCCAAACGC...................................................................................................................................................... 30 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................AAACGTGTCGTTGCTGACGT.............................................................................................................................................................. 20 0 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................AGAAAAAATTTGTCCAATTTGT.......................................... 22 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................GGACGTTCTTTCTCAGGTTTT................................................................................................................................................................................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................ACAGGTTAACGGCTGAGACGTTA................................................................................................................................................................................................................ 23 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................GCTGACGTCCAAACGCTGATTT................................................................................................................................................ 22 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TGCTGACGTCCACACGCTGATTTCAAT............................................................................................................................................ 27 1 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GTCCAAACGCTGATTTCAATTTCT........................................................................................................................................ 24 0 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATGAGTTGTCCAATCTCTG......................................... 19 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TGTCGTTGCTGACGTCCAAACGCTG.................................................................................................................................................... 25 0 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................TGACGTCCAAACGCTGATTTCAATTT.......................................................................................................................................... 26 0 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................GTCGTTGCTGACGTCCAAACGCTGAT.................................................................................................................................................. 26 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................GTGTCGTTGCTGACGTCCAAACG....................................................................................................................................................... 23 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TGCTGACGTCCAAACGCTGATTTCAAT............................................................................................................................................ 27 0 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................CGTGTCGTTGCTGACGTCCAAACGC...................................................................................................................................................... 25 0 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................GTGTCGTTGCTGACGTCCAAACGC...................................................................................................................................................... 24 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................CGTTGCTGACGTCCAAACGCTG.................................................................................................................................................... 22 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGTCCAAACGCTGATTTCAATTTCT........................................................................................................................................ 25 0 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGTCCACACGCTGATTTCAATTTCT........................................................................................................................................ 25 1 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................AGAAAAGTGGTCCAAT.............................................. 16 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ACGTCCAAACGCTGATTTCAAT............................................................................................................................................ 22 0 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................TGACGTCCAAACGCTGATTTCAATT........................................................................................................................................... 25 0 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................TGACGTCCAAACGCTGATTTCAATTTC......................................................................................................................................... 27 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ACGTCCAAACGCTGATT................................................................................................................................................. 17 0 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTAGAATAATAGCTGTAG............................................................................................................... 18 2 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................AAAGTTGTCCAATGCCT.......................................... 17 2 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................TATACGGTTGAGACGT.................................................................................................................................................................................................................. 16 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................ACTTGTCGTTGCGGACGT.............................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................AGTTACCTAGCACCGT. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................AGACGGCTGAGACGT.................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................GTCGTTGCTTACGTCCAAAGTCT..................................................................................................................................................... 23 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................ATACGGTTGAGACGT.................................................................................................................................................................................................................. 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:21021710-21021959 - dsi_18536 A--TCCACTGTTGTTTGTTGTTGTCCATATGCCGACTCTGCAAGACAGAGTCCAAAGTTTAGAATGCGTGCTGTTTTGCACAGCAACGACTGCAGGTTTGCGACTAAAGTTAAAGAGATTTATAATCTTATTATCGAAATTTTTATTCGATTTTGATCACCGAACTTTACTTCAATG------CAAGC-----------------------TACAATTC------------TGTT--TTCAACAGGTTAAAGACAAACCCACCGTTGATCAATTCATATCGATGAATCGTGGCAT
droSec2 scaffold_367:2251-2500 + A--TCCACTGTTGTTTGTTGTTGTCCATATGCCGACTCTGCAAGACAGAGTCCAAAGTTTAGAATGCGTGCTGTTTTGCACAGCAACGACTGCAGGTTTGCGACTAAAGTTAAAGAGATTTTTAATCTTATTATCGAAATTTTTATTGGATTTTGATCACCGAACTTTACTTCAATG------CAAGC-----------------------TACAATTC------------TGTT--TTCAACAGGTTAAAGACAAACCCACCGTTGATCAATTCATATCGATGAATCGTGGCAT
dm3 chrU:2778964-2779080 - A--CCCACTGTTGTTTGTTGTTGTCGATATGCCGACTCTGCAAGGCAGAGTCCAAAGTTTAGAATGCGTGCTGTTTTGCACAGCAGCGAATGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGCGACTTAAAGTTAAAGTGA
droEre2 scaffold_4845:2791186-2791267 + T--TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATG------CGATC-----------------------TACTATTC------------TGCT--TTCAACAGGTTAAAGACAAGCCCACCGTTGATCAATTCATATCAATGAATCGTGGCAT
droYak3 2R:1109716-1109797 + T--TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACG------CGAGC-----------------------TACCATTT------------TGCT--TTCAACAGGTTAAAGACAAACCCACCGTTGATCAATTTATATCTATGAATCGGGGCAT
droEug1 scf7180000409752:170463-170526 - T--C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TTCGACAGGTTAAAGACAAACCTACCGTTGAGCAATTCATATCGATGAATCGTGGCAT
droBia1 scf7180000302422:3413141-3413196 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGGTTAAAGACAAACCCACCGTTGAGCAATTCATATCGATGAATCGTGGCAT
droTak1 scf7180000415390:161222-161314 + T--TCTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------CAAAT-----------------------TCTAATCCTGTGTTTCGCTTTG-T--TTTTATAGGTTAAAGACAAACCCACCGTTGAGCAGTTCATATCGATGAATCGTGGTAT
droEle1 scf7180000490970:944503-944602 + T--TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATGATCTCCATT-----------------------GCTAACCCTTTACTTCGTTTCGAT--TTTGACAGGTCAAAGACAAACCCACCGTTGAGCAATTCATATCGATGAATCGTGGCAT
droRho1 scf7180000780137:24089-24152 + T--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTT--ATCGACAGGTCAAAGACAAACCCACCGTTGAGCAATTCATTTCGATGAATCGTGGCAT
droFic1 scf7180000453973:515404-515467 + T--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TTTGACAGGTTAAAGACAAACCCACCGTTGAGCAGTTCATCTCGATGAATCGTGGCAT
droKik1 scf7180000301567:11963-12091 - A--TTTATGTTTAATTGTTG----------------------------------------------------------------------------------------------------------------------AGCTTTATTGTTCTCTGGTATCTGGAAGTAACATTAATA------TA-TT-----------------------TATAATTT--TA----------CT----GTGCAGGTTAAAGACAAGCCAACCGTTGAGCAATTTATCTCAATGAATCGTGGCAT
droAna3 scaffold_12916:9336756-9336808 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTTAAAGACAAACCCACCGTTGAACAATTCATCTCGATGAATCGTGGCAT
droBip1 scf7180000396535:1907477-1907537 - G--C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TCTTGCAGGTTAAAGACAAACCCACCGTTGAACAATTCATCTCGATGAATCGTGGCAT
dp5 4_group1:1084653-1084717 - T--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------TGTC--GTCATTAGGTCAAAGACAAACCCACCGTTGAGCAATTCATCTCGATGAATCGTGGCAT
droPer2 scaffold_5:4124320-4124384 + T--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------TGTC--GTCATTAGGTCAAAGACAAACCCACCGTTGAGCAATTCATCTCGATGAATCGTGGCAT
droWil2 scf2_1100000004884:96617-96688 - T--TTCATTTTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--------------TTTTGTAGGTTAAAGACAAGCCCACAGTTGAGCAGTTTATTTCAATGAATCGTGGTAT
droVir3 scaffold_12963:5628122-5628190 + AATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------TTTTTTTATTGTAGGTCAAAGACAAACCCACCGTTGAGCAATTCATCTCGATGAATCGTGGCAT
droMoj3 scaffold_6500:16979933-16980048 - A--TTCAAATTTCAG----------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAATT------TAATTTTCATTTTCATTTTCATTTTCATTCT-------CA--------TTTC--GGTTTCAGGTCAAAGACAAACCCACCGTGGAGCAATTCATCTCGATGAATCGTGGCAT
droGri2 scaffold_15252:8223112-8223165 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGTCAAGGACAAACCCACCGTTGAGCAATTCATTTCGATGAATCGTGGCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
A--TCCACTGTTGTTTGTTGTTGTCCATATGCCGACTCTGCAAGACAGAGTCCAAAGTTTAGAATGCGTGCTGTTTTGCACAGCAACGACTGCAGGTTTGCGACTAAAGTTAAAGAGATTTATAATCTTATTATCGAAATTTTTATTCGATTTTGATCACCGAACTTTACTTCAATG------CAAGC-----------------------TACAATTC------------TGTT--TTCAACAGGTTAAAGACAAACCCACCGTTGATCAATTCATATCGATGAATCGTGGCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........TTGTTTGTTGTTGTCCATATGCCGA....................................................................................................................................................................................................................................................................2557.40370000001302400000000
...TCCACTGTTGTTTGTTGTTGTCCATA..........................................................................................................................................................................................................................................................................2652.401200000012900000000
..............TTGTTGTTGTCCATATGCCGACTC.................................................................................................................................................................................................................................................................2461.671000210000007000000
..............TTGTTGTTGTCCATATGCC......................................................................................................................................................................................................................................................................1961.50900009000000000000
............................................................................................CAGGTTTGCGACTAAAGTTAAAGAGA.................................................................................................................................................................................2671.431000000037000000000
...........................................................................................GCAGGTTTGCGACTAAAGTTAAAGAGA.................................................................................................................................................................................2771.4310000000010000000000
..........................................................................................TGCAGGTTTGCGACTAAAGTTAAAGA...................................................................................................................................................................................26101.301300010052211010000
..........................................................................................TGCAGGTTTGCGACTAAAGTTAAAGAGA.................................................................................................................................................................................2871.29900000014220000000
...........TGTTTGTTGTTGTCCATA..........................................................................................................................................................................................................................................................................1851.00500005000000000000
..................................................................................................................................................................................................................................................................................CATATCGATGAATCGTGG...1821.00200010000000100000
....................................TCTGCAAGACAGAGTCCAAAGTTTAGAA.......................................................................................................................................................................................................................................2821.00200000000200000000
............................................................................................CAGGTTTGCGACTAAAGTTAAAGAGATT...............................................................................................................................................................................2871.00700000034000000000
...........TGTTTGTTGTTGTCCATATGCCGA....................................................................................................................................................................................................................................................................2451.00500000010310000000
....................................................................................AACGACTGCAGGTTTGCGACTAAAGT.........................................................................................................................................................................................26100.90900230010002010000
....................................................................................AACGACTGCAGGTTTGCGACTAAA...........................................................................................................................................................................................24100.90900007010000001000
.......................................................................TGTTTTGCACAGCAACGACTGCAGG.......................................................................................................................................................................................................2580.88700000011230000000
..............TTGTTGTTGTCCATATGCCGACT..................................................................................................................................................................................................................................................................2360.83500000000203000000
...................................................................................CAACGACTGCAGGTTTGCGACT..............................................................................................................................................................................................22100.80800000800000000000
...................................................................................CAACGACTGCAGGTTTGCGACTAA............................................................................................................................................................................................24100.80800007000100000000
....................................................................TGCTGTTTTGCACAGCAACGACTGCAGG.......................................................................................................................................................................................................2870.71500000021020000000
...........................................................................................GCAGGTTTGCGACTAAAGTTAAAGAGATT...............................................................................................................................................................................2970.71500000005000000000
...........TGTTTGTTGTTGTCCATATGCCGAC...................................................................................................................................................................................................................................................................2550.60300010000002000000
..........TTGTTTGTTGTTGTCCATATGCCGACT..................................................................................................................................................................................................................................................................2750.60300000020010000000
..............................................................................................GGTTTGCGACTAAAGTTAAAGAGATT...............................................................................................................................................................................2670.57400000031000000000
..........................................................................................TGCAGGTTTGCGACTAAAGTTAAAGAGATT...............................................................................................................................................................................3070.57400000002200000000
..................TGTTGTCCATATGCCGACTCTGCAAG...........................................................................................................................................................................................................................................................2670.57400000020110000000
........................................................................................................................................................TTGATCACCGAACTTTACTTCAATG------CA..............................................................................................................2720.50100000001000000000
...........................................................................................................................................................................................................................................................................ATCAATTCATATCGATGAATCGTGGCA.2720.50110000000000000000
....................................TCTGCAAGACAGAGTCCAAAGTTTAGA........................................................................................................................................................................................................................................2720.50100000000100000000
..........TTGTTTGTTGTTGTCCATATGCCGAC...................................................................................................................................................................................................................................................................2650.40200000010100000000
............................................................................................CAGGTTTGCGACTAAAGTTAAAGA...................................................................................................................................................................................24100.40400000013000000000
........TGTTGTTTGTTGTTGTCCATATGCCGA....................................................................................................................................................................................................................................................................2750.40200000000200000000
.................................................GTCCAAAGTTTAGAATGCGTGCTGTTTA..........................................................................................................................................................................................................................2860.33200000000020000000
..............TTGTTGTTGTCCATATGCCGACTCTGC..............................................................................................................................................................................................................................................................2760.33200020000000000000
....................................................................................AACGACTGCAGGTTTGCGACTAAAG..........................................................................................................................................................................................25100.30300010000002000000
..................................................................................................TGCGACTAAAGTTAAAGAGATTTATA...........................................................................................................................................................................2670.29200000001001000000
..................................................................................................TGCGACTAAAGTTAAAGAGATTTATAA..........................................................................................................................................................................2770.29200000001001000000
..................................................................................................TGCGACTAAAGTTAAAGAGATT...............................................................................................................................................................................2270.29200000010001000000
............................................................................................CAGGTTTGCGACTAAAGTTAAAGAG..................................................................................................................................................................................2570.29200000002000000000
...........................................................................................GCAGGTTTGCGACTAAAGTTAAAGAG..................................................................................................................................................................................2670.29200000002000000000
..................TGTTGTCCATATGCCGACTCTGCA.............................................................................................................................................................................................................................................................2470.29200000000110000000
.......................................................................TGTTTTGCACAGCAACGACTGCAGGC......................................................................................................................................................................................................2680.25200000001010000000
..........................................................TTAGAATGCGTGCTGTTTTGCACA.....................................................................................................................................................................................................................24170.24400000004000000000
.....................................................................................................................................................ATTTTGATCACCGAACTTTAC.............................................................................................................................2150.20100000001000000000
........TGTTGTTTGTTGTTGTCCATATG........................................................................................................................................................................................................................................................................2350.20100000000100000000
..........TTGTTTGTTGTTGTCCATATGC.......................................................................................................................................................................................................................................................................2250.20100000000000100000
...TCCACTGTTGTTTGTTGTTGTCCATAT.........................................................................................................................................................................................................................................................................2750.20100000000100000000
.............TTTGTTGTTGTCCATATGCCGAC...................................................................................................................................................................................................................................................................2350.20100010000000000000
........TGTTGTTTGTTGTTGTCCATATGCC......................................................................................................................................................................................................................................................................2550.20100000000010000000
..........TTGTTTGTTGTTGTCCATATGCC......................................................................................................................................................................................................................................................................2350.20100000010000000000
....................................................................................AACGACTGCAGGTTTGCGACTA.............................................................................................................................................................................................22100.20200000000000011000
...........................................................................................GCAGGTTTGCGACTAAAGTTAAAGA...................................................................................................................................................................................25100.20200000002000000000
..............TTGTTGTTGTCCATATGCCGACTCTGCA.............................................................................................................................................................................................................................................................2860.17100000010000000000
..............TTGTTGTTGTCCATATGCCGAC...................................................................................................................................................................................................................................................................2260.17100000000001000000
......ACTGTTGTTTGTTGTTGTCC.............................................................................................................................................................................................................................................................................2060.17100000000001000000
..................................................TCCAAAGTTTAGAATGCGTGCTGT.............................................................................................................................................................................................................................2460.17100000000000010000
..............TTGTTGTTGTCCATATGCCGTT...................................................................................................................................................................................................................................................................2260.17100000000000001000
.................TTGTTGTCCATATGCCGACTCTGCA.............................................................................................................................................................................................................................................................2560.17100000000100000000
...TCCACTGTTGTTTGTTGTTGTCCA............................................................................................................................................................................................................................................................................2460.17100000000100000000
..............TTGTTGTTGTCCATATGC.......................................................................................................................................................................................................................................................................1860.17100000000001000000
....................................................CAAAGTTTAGAATGCGTGCTGTTT...........................................................................................................................................................................................................................2460.17100000001000000000
..................................................TCCAAAGTTTAGAATGCGTGCTGTT............................................................................................................................................................................................................................2560.17100000000010000000
.................................................GTCCAAAGTTTAGAA.......................................................................................................................................................................................................................................1570.14100000000001000000
....................................................................................................CGACTAAAGTTAAAGAGATTTATAATCT.......................................................................................................................................................................2870.14100000000010000000
..................TGTTGTCCATATGCCGACTCTGCAA............................................................................................................................................................................................................................................................2570.14100000000100000000
................................................................................................TTTGCGACTAAAGTTAAAGAGATTTA.............................................................................................................................................................................2670.14100000000100000000
..............................................................................................................TAAAGAGATTTATAATCTTA.....................................................................................................................................................................2070.14100000000010000000
................................................................................................TTTGCGACTAAAGTTAAAGAGATT...............................................................................................................................................................................2470.14100000001000000000
...................GTTGTCCATATGCCGACTCTGCAAG...........................................................................................................................................................................................................................................................2570.14100100000000000000
..................TGTTGTCCATATGCCGA....................................................................................................................................................................................................................................................................1770.14100000000100000000
..................................................................................................TGCGACTAAAGTTAAAGAGA.................................................................................................................................................................................2070.14100000000001000000
....................................................................TGCTGTTTTGCACAGCAACGACTGCAGGC......................................................................................................................................................................................................2970.14100000001000000000
..................................................................................................TGCGACTAAAGTTAAAGAGATTTATAAA.........................................................................................................................................................................2870.14100000000000010000
.................................................................................................TTGCGACTAAAGTTAAAGAGATTTATA...........................................................................................................................................................................2770.14100000000001000000
................................................................................................TTTGCGACTAAAGTTAAAGAGATTTATAAT.........................................................................................................................................................................3070.14100000000100000000
..................TGTTGTCCATATGCCGAC...................................................................................................................................................................................................................................................................1870.14100000000001000000
..................TGTTGTCCATATGCCGACTCTGC..............................................................................................................................................................................................................................................................2370.14100010000000000000
..................................................................................................TGCGACTAAAGTTAAAGAGATTT..............................................................................................................................................................................2370.14100000000010000000
............................................................................TGCACAGCAACGACTGCAGGTTTGCGA................................................................................................................................................................................................2780.13100000001000000000
.......................................................................TGTTTTGCACAGCAACGACTGCAGGTT.....................................................................................................................................................................................................2780.13100010000000000000
..........................................................................TTTGCACAGCAACGACTGCAGGTT.....................................................................................................................................................................................................2480.13100000000010000000
............................................................................TGCACAGCAACGACTGCAGGTTTGCGACT..............................................................................................................................................................................................2980.13100000000010000000
............................................................................TGCACAGCAACGACTGCAGGTTTGCGAC...............................................................................................................................................................................................2880.13100000001000000000
..........................................................TTAGAATGCGTGCTGTTTTGCACAT....................................................................................................................................................................................................................25170.12200000002000000000
............................................................................................CAGGTTTGCGACTAAAGTTAAAGT...................................................................................................................................................................................24100.10100000010000000000
....................................................................................AACGACTGCAGGTTTGCGACTAT............................................................................................................................................................................................23100.10100000000000010000
....................................................................................AACGACTGCAGGTTTGCGACTAAAT..........................................................................................................................................................................................25100.10100000000000001000
....................................................................................AACGACTGCAGGTTTGCGACTAA............................................................................................................................................................................................23100.10100000000100000000
...........................................................................................GCAGGTTTGCGACTAAAGTTAAAG....................................................................................................................................................................................24100.10100000001000000000
....................................................................................AACGACTGCAGGTTTGCGACTATTT..........................................................................................................................................................................................25100.10100000000000010000
..........................................................................................TGCAGGTTTGCGACTAAAGTTAAAG....................................................................................................................................................................................25100.10100000000100000000
..................................................................................GCAACGACTGCAGGTT.....................................................................................................................................................................................................16100.10100000000001000000
.........................................................TTTAGAATGCGTGCTGTTTTGCACAG....................................................................................................................................................................................................................26110.09100000000001000000
...............................................................ATGCGTGCTGTTTTGCACAGC...................................................................................................................................................................................................................21170.06100000000001000000
...........................................................TAGAATGCGTGCTGTTTTGCACAGT...................................................................................................................................................................................................................25170.06100000000001000000
droSec2
A--TCCACTGTTGTTTGTTGTTGTCCATATGCCGACTCTGCAAGACAGAGTCCAAAGTTTAGAATGCGTGCTGTTTTGCACAGCAACGACTGCAGGTTTGCGACTAAAGTTAAAGAGATTTTTAATCTTATTATCGAAATTTTTATTGGATTTTGATCACCGAACTTTACTTCAATG------CAAGC-----------------------TACAATTC------------TGTT--TTCAACAGGTTAAAGACAAACCCACCGTTGATCAATTCATATCGATGAATCGTGGCATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................CAGGTTTGCGACTAAAGTTAAAGAGA.................................................................................................................................................................................2631.3343001
..................................................................................................................................................................................................................................................................................CATATCGATGAATCGTGGC..1911.0010010
............................................................................................CAGGTTTGCGACTAAAGTTAAAGA...................................................................................................................................................................................2460.6744000
..........TTGTTTGTTGTTGTCCATATGCCGAC...................................................................................................................................................................................................................................................................26170.4786101
..........TTGTTTGTTGTTGTCCATATGCC......................................................................................................................................................................................................................................................................23180.4483050
............................................................................................CAGGTTTGCGACTAAAGTTAAAGAG..................................................................................................................................................................................2530.3311000
............................................................................................CAGGTTTGCGACTAAAGTTAAAG....................................................................................................................................................................................2370.2922000
..........TTGTTTGTTGTTGTCCATATGCCG.....................................................................................................................................................................................................................................................................24180.2853011
...........TGTTTGTTGTTGTCCATATGCCGACTC.................................................................................................................................................................................................................................................................27150.2744000
..........TTGTTTGTTGTTGTCCATATGCCGA....................................................................................................................................................................................................................................................................25180.2244000
..........TTGTTTGTTGTTGTCCATATGC.......................................................................................................................................................................................................................................................................22180.2242020
...........TGTTTGTTGTTGTCCATATGCCGA....................................................................................................................................................................................................................................................................24180.1733000
..........TTGTTTGTTGTTGTCCATATGCCGACTC.................................................................................................................................................................................................................................................................28150.1322000
.........................................................TTTAGAATGCGTGCTGTTTTGCACAG....................................................................................................................................................................................................................26140.0710010
.........................................................TTTAGAATGCGTGCTGTTTTGCA.......................................................................................................................................................................................................................23150.0710010
...........TGTTTGTTGTTGTCCATATGCCGAC...................................................................................................................................................................................................................................................................25170.0611000
dm3
A--CCCACTGTTGTTTGTTGTTGTCGATATGCCGACTCTGCAAGGCAGAGTCCAAAGTTTAGAATGCGTGCTGTTTTGCACAGCAGCGAATGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGCGACTTAAAGTTAAAGTGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................GAGTCCAAAGTTTAGAATGCGTGCT...............................................................................................................................................................................................................................25101.501500000000000000000000000000000000000000000000000000000000000000000000000000000000000015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................GCGAATGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGCGA................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CAGAGTCCAAAGTTTAGAATGCGTGC................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................TCCAAAGTTTAGAATGCGTGCTGT.............................................................................................................................................................................................................................24100.3030000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................GTCCAAAGTTTAGAATGCGTGCTGT.............................................................................................................................................................................................................................25100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TCCAAAGTTTAGAATGCGTGCTGTT............................................................................................................................................................................................................................25100.2020000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CAAAGTTTAGAATGCGTGCTG..............................................................................................................................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................TTTAGAATGCGTGCTGTTTTG.........................................................................................................................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................TTTAGAATGCGTGCTGTTTTGCACA.....................................................................................................................................................................................................................25100.1010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TAGAATGCGTGCTGTTTTGCAC......................................................................................................................................................................................................................22100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TTAGAATGCGTGCTGTTTTGC........................................................................................................................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................TTTAGAATGCGTGCTGTTTTGCA.......................................................................................................................................................................................................................23100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TAGAATGCGTGCTGTTTTGCA.......................................................................................................................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................AGAGTCCAAAGTTTAGAATGCGTGCTGC.............................................................................................................................................................................................................................28100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TCCAAAGTTTAGAATGCGTG.................................................................................................................................................................................................................................20100.1010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TGTTTGTTGTTGTCGATG..........................................................................................................................................................................................................................................................................18110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
....CCACTGTTGTTTGTTGTTGTC..............................................................................................................................................................................................................................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
T--TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATG------CGATC-----------------------TACTATTC------------TGCT--TTCAACAGGTTAAAGACAAGCCCACCGTTGATCAATTCATATCAATGAATCGTGGCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................G------CGATC-----------------------TACTATTC------------TGCT--TTCAACAG..................................................2611.0011000000
........................................................................................................................................................................................GATC-----------------------TACTATTC------------TGCT--TTCA......................................................2011.0011000000
droYak3
T--TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACG------CGAGC-----------------------TACCATTT------------TGCT--TTCAACAGGTTAAAGACAAACCCACCGTTGATCAATTTATATCTATGAATCGGGGCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................ATTTATATCTATGAATCGGGGC..2211.00100000010000
......................................................................................................................................................................................................................................................TTAAAGACAAACCCACCGTT.............................2011.00101000000000
.........................................................................................................................................................................................................................................................................TGATCAATTTATATCTATGAATCGG.....2511.00101000000000
droEug1
T--C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TTCGACAGGTTAAAGACAAACCTACCGTTGAGCAATTCATATCGATGAATCGTGGCATSizeHit CountTotal NormTotal
No Reads
droBia1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGGTTAAAGACAAACCCACCGTTGAGCAATTCATATCGATGAATCGTGGCATSizeHit CountTotal NormTotal
No Reads
droTak1
T--TCTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------CAAAT-----------------------TCTAATCCTGTGTTTCGCTTTG-T--TTTTATAGGTTAAAGACAAACCCACCGTTGAGCAGTTCATATCGATGAATCGTGGTATSizeHit CountTotal NormTotal
No Reads
droEle1
T--TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATGATCTCCATT-----------------------GCTAACCCTTTACTTCGTTTCGAT--TTTGACAGGTCAAAGACAAACCCACCGTTGAGCAATTCATATCGATGAATCGTGGCATSizeHit CountTotal NormTotal
No Reads
droRho1
T--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTT--ATCGACAGGTCAAAGACAAACCCACCGTTGAGCAATTCATTTCGATGAATCGTGGCATSizeHit CountTotal NormTotal
No Reads
droFic1
T--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TTTGACAGGTTAAAGACAAACCCACCGTTGAGCAGTTCATCTCGATGAATCGTGGCATSizeHit CountTotal NormTotal
No Reads
droKik1
A--TTTATGTTTAATTGTTG----------------------------------------------------------------------------------------------------------------------AGCTTTATTGTTCTCTGGTATCTGGAAGTAACATTAATA------TA-TT-----------------------TATAATTT--TA----------CT----GTGCAGGTTAAAGACAAGCCAACCGTTGAGCAATTTATCTCAATGAATCGTGGCATSizeHit CountTotal NormTotal
No Reads
droAna3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTTAAAGACAAACCCACCGTTGAACAATTCATCTCGATGAATCGTGGCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................GTTAAAGACAAACCCACCGTTGAACA........................2611.001000010
.....................................................................................................................................................................................................................................................GTTAAAGACAAACCCACCGTT.............................2111.001010000
droBip1
G--C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TCTTGCAGGTTAAAGACAAACCCACCGTTGAACAATTCATCTCGATGAATCGTGGCATSizeHit CountTotal NormTotal
No Reads
dp5
T--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------TGTC--GTCATTAGGTCAAAGACAAACCCACCGTTGAGCAATTCATCTCGATGAATCGTGGCATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................CATCTCGATGAATCGTGGC..1911.0010100000000
...................................................................................................................................................................................................................................................................................ATCTCGATGAATCGTGGC..1811.0010100000000
.........................................................................................................................................................................................................................................................AAGACAAACCCACCGTTGAGCAATT.....................2511.0010010000000
.................................................................................................................................................................................................................................................................................TCATCTCGATGAATCGTGGC..2011.0010010000000
droPer2
T--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------TGTC--GTCATTAGGTCAAAGACAAACCCACCGTTGAGCAATTCATCTCGATGAATCGTGGCATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................CATCTCGATGAATCGTGGC..1911.001010000
droWil2
T--TTCATTTTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--------------TTTTGTAGGTTAAAGACAAGCCCACAGTTGAGCAGTTTATTTCAATGAATCGTGGTATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................GACAAGCCCACAGTTGAGCAGT......................2212.00200200
........................................................................................................................................................................................................................................................AAAGACAAGCCCACAGTTGAGC.........................2211.00101000
.............................................................................................................................................................................................................................................................CAAGCCCACAGTTGAGCAGTTTATTTCA..............2811.00100100
droVir3
AATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------TTTTTTTATTGTAGGTCAAAGACAAACCCACCGTTGAGCAATTCATCTCGATGAATCGTGGCATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................GTTGAGCAATTCATCTCGAT............2012.002000000000000000000000000000000000200000000000000000000000000000
..........................................................................................................................................................................................................................................................AGACAAACCCACCGTTGAGCAATT.....................2411.001000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................................................................................................................................................................CATCTCGATGAATCGTGGC..1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................GTTGAGCAATTCATCTCGATG...........2111.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
A--TTCAAATTTCAG----------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAATT------TAATTTTCATTTTCATTTTCATTTTCATTCT-------CA--------TTTC--GGTTTCAGGTCAAAGACAAACCCACCGTGGAGCAATTCATCTCGATGAATCGTGGCATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................ATTCT-------CA--------TTTC--GGTTTCAG..................................................1911.001100000
droGri2
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGTCAAGGACAAACCCACCGTTGAGCAATTCATTTCGATGAATCGTGGCATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:22 PM