ID:

dsi_18516

 Coordinate:

3r:15058701-15058994 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.5 -16.2 -16.0 -15.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGAATGCGGCCATGCCATCGACAATGTCGTCCGTTCGCATCGATGAAATGGTTGGTAATGCTAATGGTGATCCCGCCGCCGCTGCGGACGCGAAAGCCCCGAACCCGGTTACGGGTCAAGTTCAAGTTCCGGTTGCGGACTCCGGCGTCCAAACCGTTACTTATGATTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAAAACGTTGGCCGCATTCCCTAGCGTTACGAAGCATTGGCACCAGACACTCAATCGGTTAACAAAATTCATCATTCCCTCGTCCTGCGATCCGATCCAAGTCGAAACTAAAACCAAATCCAAATCAAAATTTAAAATTTCTAACCTCTTTTTCTTGTTCAACACGAAGAAACATTGCTTTTGTGGGATCAC
***********************************************************************************************************************.....((((.(((((..((((......)))).)))))....................))))********************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR1275487
Male larvae		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
.................................................................................CTGCGGACGGGAAAGCCC....................................................................................................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................GACAATGTCGTCCGTTCGCAT.................................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................CGCATCGATGAAATGGCTGATGATG.............................................................................................................................................................................................................................................................................................................................................. 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................CTTATGATTTTCCCAAGGGCT...................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................AGAAACATTGCTTTTGTGGGAT... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TGCGGACTCCGGCGTCCAAACCGTT............................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................TGCGGACTCCGGCGTCCAAACCGTTACT......................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................GTTCAAGTTCCGGTTGCGGACTCCGGC........................................................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................GTTACTTATGATTTTCCCAAG.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................TGCGGACGCGAAAGCCCCGAACCC................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................TCATGTTCAATTTCCGGTT.................................................................................................................................................................................................................................................................... 19 2 5 0.60 3 0 0 0 0 0 3 0 0 0
...................................................................................................................................GTTGCGGATACCGGCGTC..................................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................TTTTCGCAAGGGCGCGCCA................................................................................................................................................................................................................. 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0
.......................................................TAATGCTAATGGAGA.................................................................................................................................................................................................................................................................................................................................... 15 1 15 0.47 7 0 0 0 0 7 0 0 0 0
.....................................................GTTAATGCTAATGGAGA.................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.30 6 0 0 0 0 6 0 0 0 0
...........................................................................................................................................................................................................................................................................................GTCCTGTGATCTGATCCA............................................................................................. 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................TTCCCCAGGGCGCGCCA................................................................................................................................................................................................................. 17 2 8 0.13 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................GGCTCGTCAGATCAAGAGG....................................................................................................................................................................................................... 19 3 9 0.11 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................CTTTGTCTTATTCAACAAGA......................... 20 3 11 0.09 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................GATCCGATCGAAGTCGAGAT.................................................................................... 20 3 11 0.09 1 0 0 0 1 0 0 0 0 0
.............................................AAATGGTTGGTAGAGCT............................................................................................................................................................................................................................................................................................................................................ 17 2 19 0.05 1 0 0 0 0 0 0 0 0 1
..........................................................................GCCCCCGCGGCGGACG................................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1
............................................................................................ATAGACCCGAACCCGG.............................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0
..........................TCGGACGTTCGCATCG................................................................................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TCTTACGCCGGTACGGTAGCTGTTACAGCAGGCAAGCGTAGCTACTTTACCAACCATTACGATTACCACTAGGGCGGCGGCGACGCCTGCGCTTTCGGGGCTTGGGCCAATGCCCAGTTCAAGTTCAAGGCCAACGCCTGAGGCCGCAGGTTTGGCAATGAATACTAAAAGGGTTCCCGAGCGGTCTACTCCTCCAATCTTAGTTTTGCAACCGGCGTAAGGGATCGCAATGCTTCGTAACCGTGGTCTGTGAGTTAGCCAATTGTTTTAAGTAGTAAGGGAGCAGGACGCTAGGCTAGGTTCAGCTTTGATTTTGGTTTAGGTTTAGTTTTAAATTTTAAAGATTGGAGAAAAAGAACAAGTTGTGCTTCTTTGTAACGAAAACACCCTAGTG
**********************************************************************************************************************************************************************************************************************.....((((.(((((..((((......)))).)))))....................))))*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
........................ATAGCAGGCAAGCGAAGTTACT............................................................................................................................................................................................................................................................................................................................................................ 22 3 2 1.50 3 0 0 1 0 2 0 0
........................................................................................................................................................................................................................................................................................................................................................TTGGAGAGAAAGAGCCAGTTGT............................ 22 3 1 1.00 1 1 0 0 0 0 0 0
................................................................ACCACAAGGGCGGGGGCGGCGCC................................................................................................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
..........GTACGGTAGCTGTTACAGCAG........................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
................................................................ACCACTAGGGCCGCG........................................................................................................................................................................................................................................................................................................................... 15 1 7 0.57 4 0 0 0 0 0 4 0
....................................................................................................................................................................................................................GGCCGCAAGGGATCGCAAT................................................................................................................................................................... 19 3 2 0.50 1 0 0 0 0 0 0 1
...................................................................................................................................................................................................................................................................................................TAGGCCAGGTTCAGCT....................................................................................... 16 1 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................CTAAGGGTTCGCAATGC................................................................................................................................................................. 17 2 4 0.25 1 0 0 0 0 0 1 0
................................................................ACCACAAGGGCGGTGGCTACG..................................................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0
.........................................................................................................................................................................AGGGTTCACGAGCGGT................................................................................................................................................................................................................. 16 1 6 0.17 1 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................ATCAGGACGTTTGGCTAGGT............................................................................................. 20 3 6 0.17 1 0 0 1 0 0 0 0
......................................................................CGGGCGGCGGCGGCGCCTGCT............................................................................................................................................................................................................................................................................................................... 21 3 11 0.09 1 0 0 1 0 0 0 0
..............................................................................GGCGACGCCTCCGCT............................................................................................................................................................................................................................................................................................................. 15 1 13 0.08 1 1 0 0 0 0 0 0
................................................................ACCACTAGGGCGGGCG.......................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0
.......................................................................GGGCGGCGGCGGCGCCTT................................................................................................................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 1 0 0 0 0
.................................................................CCACAAGGGCGGGGGCG........................................................................................................................................................................................................................................................................................................................ 17 2 20 0.05 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................................TTGCACTGCTTCGTAA.......................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0
.............................AGGCAATCGTAGTTAC............................................................................................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................ACCGTGGTCTGAGAAT........................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0
........................................................................................................................................CCTCAGGCCGCAGGAT.................................................................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:15058651-15059044 + dsi_18516 AGAATGCGGCCATGCCATCGACAATGTCGTCCGTTCGCATCGATGAAATGGTTGGTAATGCTAATGGT-----GATCC------CG----CCGC---C---------GCTGCGGACGCGAAAGCCCCGAACCCGGTTACGGG---TCAAGTTCAA------------------GTTCCGGTTGCGGACTCCGG--------------------------------------------C------GTCCAAACCGTTACTTATGATTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAAAACGTTGGCCGCATTCCCTAGCGTTACGAAGCATTGGCACCAGAC--------ACTCAATCGGTTA-----ACAA---AATTCATCATT-----------------------CCCTCGTCC-TG-------CGATCCGATCCAAGTCGAAACTAAAA------------------CCAAATCCAA------ATCA-----------AAAT-TTAA---AATTTCTAACCTCTTTTTCTTG-TTCAACACGAAGA---AACATTGCTTTTGTGGGATCAC
droSec2 scaffold_0:15924440-15924827 + AGAATGCGGCCATGCCATCGACAATGTCGTCCGTTCGCATCGATGAAATGGTTGGTAATGCTAATGGT-----GATCC------C----------------------GCTGCGGACGCGAAAGCCCCGAACCCGGTTACGGG---TCAAGTTCAA------------------GTTCCGGTTGCGGACTCCGG--------------------------------------------C------GTCCAAACCGTTACTTATGATTTTCCCAAGGGCTCGCTAGATGAGGAGGTTAGAATCAAAACGTTGGCCGCATTCCCTAGCGTTACGAAGCATTGGCACCAGAC--------ACTCAATCGGTTA-----ACAA---TATTCATCATT-----------------------CCCTCGTCC-TA-------CGATCCGATTAAATTGAAAACTAAAA------------------CCAAATCAAA------ATCA-----------AAAT-TTAA---AATTTCTAACCTCTTTTTCTTG-TTCAACACGAAGA---AACATTGCTTTTGTGGGATCAC
dm3 chr3R:5990097-5990490 - AGAATGCGGCCATGCCATCGACAATGTCGTCCGTTCGCATCGATGAAATGGTTGGTAATGCTAATGGT-----GATCC------CG----CCGC---C---------GCTGCGGATGCGAAAGCCCCGAACCCGGTTACGGG---TCAAGTTCAA------------------GTTCCGGGTGCGGACACCGG--------------------------------------------C------GTCCAAACCGTTACTTATGATTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAAAACGTTGGCCGCATTCCCTAGCGTTACGAAGCATTGGCACCAGAC--------ACTCAATCGGTTA-----ACAA---AATTCATCATT-----------------------CCCTCGTCC-TG-------CGATCCGATCCAAGTCGAAACTAAAT------------------CCAAATCCAA------ATCA-----------AAAT-TTAA---AATTTCTAACCTCTTTTTCTTG-TTCAACACGAAGA---AACATTGCTTTTGTGGGATCAC
droEre2 scaffold_4770:15602063-15602462 + AGAATGCGGCCATGCCATCGACAATGTCGTCCGTTCGCATCGATGAAATGGTTGGTAATGCTAATGGT-----GATCC------CG----CCGC---C---------GCTGCGGACGCGAAAATCCCGATCCCGGTTACGGG---TCAAGTTCAA------------------GTTCCGGTTGCGGACTCCGG--------------------------------------------C------GTCCAAACCGTTACTTATGATTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAAAACGTTGGCTGCATTCCATAGCGTTACGAAGCATTGGCACCAGAC--------ACTCAATCGGTTA-----ACAA---AATTCATCATC-----------------------CCCTCGTCC-TG-------CGATCTGATCCAAGTCGAAACTAAAT------------------CAAGATCCAATACCAAATCA-----------AAAT-TAAA---AATTTCTAACCTCTTTTTCTCG-TTCAACACGAAGA---AACATTGCTTTTGTGGAATCAC
droYak3 3R:10038837-10039236 - AGAATGCGGCCATGCCATCGACAATGTCGTCCGTTCGGATCGATGAAATGGTTGGTAATGCTAATGGT-----GATCC------CG----CCGC---C---------GCTGCGGACGCGAAAATCCCGATCCCGGTTACGGG---TCAAGCTCAA------------------GTTCCGGGTGCGGACTCCGG--------------------------------------------C------GTCCAAACCGTTACTTATGATTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAAAACGTTGGCTGCATTCCATAGCGTTACGAAGCATTGGCACCAGAC--------ACTCAATCGGTTA-----ACAA---AATTCATCATC-----------------------CCCTCGTCC-TG-------CGATCTGATCCAAGTCGAAACTAAAT------------------CCAAATCCAATACCAAATCA-----------AAAT-TTAA---AATTTCTAACCTCTTTTTCTTG-TTCAACACGAAGA---AACATTGCTTTTGTGGGATCAC
droEug1 scf7180000405351:32726-33119 + AGAATGCGGCCATGCCTTCGACAATGTCGTCCGTTCGGATTGATGAAATGGTTGGTAATGCTAATGGT-----GACCC------CG----TCGC---CGCTGCC---GCCGCGGATGCAAAGATCCCG------GGTCCGGG---TCAAGTTCAA------------------GGTCCGGTTGCGGACTCTGG--------------------------------------------G------GTCCAATCCGTTACCTATGACTTTCCCAAGGGCTCGGCAGATGAGGAGGTTAGAATCAAAACGTTGGCTGCATTCCCTAGCTTTACAAAGCATCGGCACCTAAC--------AACCAATTGGTTA-----ACCAAAAAATTCATCA------------------------TC--TCGTCC-TG-------CGACCTGATCCAAGTCAAAACTAAAT------------------CCAAATCAAT------ATCG-----------AAAT-TACA---AGTTTCTAACCTCTTTTTCTTG-TTCAACACGAAGA---AACATTGCTTTTGTGGGATCAC
droBia1 scf7180000302075:5913629-5914025 - AGAACGCGGCCATGCCCTCGACCATGTCCTCCGTGCGGATCGATGAAATGGTTGGTAATGCTAGTGGT-----GACCC------CA----CCGC---CGCCGCC---GCCGCGGAAGCGAAGCCCCCT------GCTCCGGGGGCTCAAGCTCAA------------------GGTCCGGTCGCGGACTCCGG--------------------------------------------G------GTCCAGACCGTGACCTATGACTTTCCCAAGGGCTCGGCAGACGAGGAGGTTAGAATCAAAACGTTGGCTGCATTCCCTAGCGTTACGAAGCATTGGCACCTGA-------ACTCTCGATTGGTTA-----ACCA---AATTCATCA------------------------TCTCTCGTCC-AG-------CAAACTGATCCAAATCGAAACTAAAT------------------CCGAATCAAT------ATCG-----------AAAT-TACA---AGTTTCTAACCTCTTTTTCTTG-TTCAACACGAAGA---GACATTGCTTTTGTGGGATCAC
droTak1 scf7180000415396:594066-594455 - AGAATGCGGCCATGCCCTCGACAATGTCGTCCGTGCGGATCGATGAAATGGTTGGTAATGCTAATGGT-----GACCC------CG----CCGC---C---ACC---GCCGCGGATGCGAAGGCCCCG------GGTCAGGG---GCAAGTTCAA------------------GTTCCGGCTGGGGACTCCGG--------------------------------------------G------GTCCAGTCCGTTACTTATGACTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAAAACGTTGGCCGCATTCCCTAGCCTTACGAAGCATTGGCACCTGAC--------TCTCGATTGGTTA-----ACCA---AATTCATCA------------------------TCTCTCGTCC-TG-------CGATCTGATCCAAGTCAAAACTAAAT------------------CGAAATCAAT------ACCG-----------AAAT-TACA---AACTTCTAACCTCTTTTTCTTG-TTAAACACAAAGA---AACATTGCTTTTGTGGGATCAC
droEle1 scf7180000491080:226314-226706 + AGAATGCGGCCATGCCCTCGACAATGTCGTCCGTGCGGATCGATGAAATGGTTGGTAACACTAGTGGT-----GACCC------CG----CCGC---C---------GCTGCGGACACGAAGCTGACGGGCCCGGC---------TCAGGCTCAGGCACAGGTTTCTA------ATCCTGTTCCGGAGTCCGG--------------------------------------------C------GTCCAGTCCGTTACTTATGACTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAGAACGTTGGCAGCATTCCCTAGCGTTACGAAGCATTGGCACCTGAC--------TATCAATTGGTTA-----ACCA---AATTCATCA------------------------TCTATCGTCC-TG-------CGATCTGATCCACGTCAAAACTAAAT------------------CCAAAT------------CA-----------AATT-CAAA---AAATTCTAACCTCTTTTTCTTG-TTTTACACGAAGA---AAGATTATATTTGTGGGATCAC
droRho1 scf7180000778278:24736-25137 + AGAATGCGGCCATGCCCTCGACCATGTCGTCTGTGCGCATCGATGAAATGGTTGGTAATACTAGTGGT-----GACCC------CG----CCGT---C------------GCGGATACGAAGCTCACGGTCCCGGGTTCGGG---TCCGGGTCAGGCACAGAATCCTGTTCCTGCTCCTGTTCCGGAATCCGG--------------------------------------------C------GTCCAGTCCGTTACTTATGACTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAGAACGTTGGCCGCATTCCTTAGCGTTACGAAGCATTGGCACCTGCC--------TATCGATTGGCTA-----ACCA---AATTCATCA------------------------TCTATCGTCT-TG-------CGATCTGATCCAAGTCCAAACTAAAT------------------CCAAAT------------CA-----------AAAT-CAAA---AGTTTCTAACCTCTTTTTCTTG-TTTTACACGAAGA---AACCTTGTAATTGTGGGATCAC
droFic1 scf7180000453800:2082364-2082772 - AAAACGCCGCGATGCCATCGACAATGTCATCCGTGCGCATCGATGAAATGGTTGGTAATGCTAGTGGT-----GATCC------CG----CCGT---C---------GCCGCGGATGCGAAGGCCCCG------GGTCCGGG---TCAAGCTCAAGATCCGACTTCGACTACGGCTCCGGCTACGGATGCCGG--------------------------------------------T------GTCCAGTCGGTTACTTATGACTTTCCTAAGGGCTCGCCAGATGAGGAGGTTAGAATCAGAACGTTGGCCGCAATCCCTAGCCTTACAAAGCATTGGCACCTGAC--------TCTCGATTGGTTA-----ACAA---AATTCATCA------------------------CCTCTTGTCC-TG-------CGATCTGATCCAAGTCAAAGCCTAAT------C-----------AAAAATCCAA------ATCA-----------AATT-CAAC---AGTTTCTAACCTCTTTTTCTTG-TCTCACACGAAAAGAAAACATTGCATTTGTGGGATCAA
droKik1 scf7180000302261:224100-224513 - AGAATGCCGCCATGCCCTCGACCATGTCGTCTGTTCGCATCGATGAAATGGTTGGTAATGCTAATGGC-----GCCAC------TG----CCGCCGCCGCTGCC---GCTCCGGACACGAAGGTCCCGCTAGCGGGTGTGGG---TCAAGTTCCCGGCCAGGCCTCTGGCCAGGTTCCGGTTCCGGGTTCGGA--------------------------------------------T------CAGCAGTCCGTTACCTATGACTTTCCCAAGGGCTCGCCAGACGAGGAGGTTAGAATCAGAACGTTGGCCGCATTTCCTAGCGTTACGAAGCATTGGCACCCGAC--------TCTCAATTGGTTA-----ACCA---AAGTCATCA------------------------TCTCTCAACC-AG-------CGACCTAAACCAAGTTCAAAATTAAT------------------CCAAAT------------TT-----------AAAT-CAAA---AGTTTCTAACCTCTTTT-CTCGTTTGTACTTGAAAG---AACATTGCATTTGTGGCATCAC
droAna3 scaffold_13340:1068427-1068805 + AGAACGCGGCCATACCCTCGACCATGTCCAGTGTTCGCATCGATGAAATGGTTGGTAATACTAACGGC-----GGCAACCC---CG----CCGC---T---------GCTCCGGATGAAAAACCGCCG------GGTACGAC---TCCGGTTCAG------------------GCCTCGG------------GGCAAT--------------------CCGAGATG---CCGCAAGGC------GTGCAGTCCGTAACCTATGATTTCCCAAAGGGCTCGCCAGATGAGGAGGTTAGAATCAGAACGTTGGTCGCATTTCCTAGCGTTACGAAGCATTGGCACCTGAC-----AACTCTCAATTGGTCCT----ACCA---AATCGA---------------------ACATCATCTCTCGACCCT---------------------GTCGAGGCTA-AT------------------CCAAATCTAA------TTCG-----------AAAT-CAAA---AGTTTCTAACCTCTTTTTCTC---T--------------GACATTTCATTGGTGGAATACC
droBip1 scf7180000396395:745917-746296 - AGAACGCGGCCATGCCCTCGACCATGTCCAGCGTTCGCATCGATGAAATGGTTGGTAATACTAACGGC-----GGCAACAC---CG----CCGC---C---------GCTCCGGATGTAAAACCGCCG------GGTACGAC---TCCGGTTCAG------------------GTCTCGG------------GGCAAT--------------------CCGAGCTG---CCGCAAGGC------GTGCAGTCCGTTACCTATGATTTCCCAAAGGGCTCGCCAGATGAGGAGGTTAGAATCAGAACGTTGGTCGCATTTCCTAGCGTTACGAAGCATTGGCACCTGAC-----AACTCTCAATTGGTCCT----TCCA---AATTGA---------------------ACATCATCTCTCGACC---------------------CCGTCGAGACTAATC------------------AGAAATCTAA------TTCG-----------AAAT-CAAA---AGTTTCTAACCTCTTTTTTTC---T--------------GACATTTCATTGGTGGAATACC
dp5 2:7492800-7493152 + AGAGCGCGGCCATGCCCTCGACGATGTCCTCCGTGCGCATCGATGAAATGGTTGGTAATGATACTGCC-----GCCCC------CA----CTGC---C---------GTTGCCCC--------------------------------------------------------------------------------AATCAACACCATGCCGCCCGTCGCCGAACAG---GCGGAGGGCGTGCCCCTGCAGGCAGTAACCTATGACTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAGAACGTTGGCAGCATTCCCTAGCGTTACGAAGCATTGGCACCAGTC--------TCCCAATTGGCTATCCGA-CAA-ACAATTCG----------TTCA-------------TCTGTC---------------AATGTGA-CCAAATCAAACAAAAAA------------------CCTAA------------ACA-----------AAAT-CAAA---AGTTTCTAACCTCTTATTCGC---TC----------------------ATTTTGGGACCAC
droPer2 scaffold_0:1333758-1334110 + AGAGCGCGGCCATGCCCTCGACGATGTCCTCCGTGCGCATCGATGAAATGGTTGGTAATGATACTGCC-----GCCCC------CA----CTGC---C---------GTTGCCCC--------------------------------------------------------------------------------AATCAACACCATGCCGCCCGTCGCCGAACAG---GCGGAGGGCGTGCCCCTGCAGGCAGTAACCTATGACTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAGAACGTTGGCAGCATTCTCTAGCGTTACGAAGCATTGGCACCAGTC--------TCCCAATTGGCTATCCGA-CAA-ACAATTCG----------TTCA-------------TCTGTC---------------AATGTGA-CCAAATCAAACAAAAAA------------------CCTAA------------TCA-----------AAAT-CAAA---AGTTTCTAACCTCTTATTCGC---TC----------------------ATTTTGGGACCAC
droWil2 scf2_1100000004921:878617-878987 - AAAGTGCTGCAATGCCATCGACTATGTCGTCTGTGCGCATCGATGAAATGGTTGGTAATAATGCCACTGCT--GCACC-ACCAGCTCTGGCTAG---TGTTGCCCCCGAGGGGGGTACAAAACTC---------TTTATGGA---ACAGCCACAG------------------CAAC--------------------------------------------------------AGGGTGTACCCCTGCAGACAGTCACTTATGACCTAACCAAGGGTGCGCCAGATGAGGAGGTTAGAATCAAAAAGTTGGCAGCATTTAA--GGCA---AACGTATTGGCACCATCGAACCCAAAACACAATTGGCACT----A------TATAA-------------------------------------------------------ATCAAAATCGAAA-TCGATCATCATCCAACAAAGTGACCA------C------ATCA-----------AAAT-TTCG---AAATTCTAACCTCTTTCTCTTT-CTTAA--------------------ATTATCTGGTTAA
droVir3 scaffold_13047:1143349-1143715 + dvi_15060 AGAATGCGGCCATGACCTCTGGGATGTCATCTGTGCGCATCGATGAAATGGTTGGTAATAATAGCACC-----GGCGC------CT----CTG-----------------------------------------GGT------------------------------------------------------------------CTAAGCCGCCTTCAGCTGAACAG---CCACAAGGCGCACCTATGCAGACAGTTACTTATGATCTTTCCAAAGCTGCGCCAGATGAGGAGGTTAGAATCAAAACGTTGGCAGCATTCACTAGCGATACGAAGTATTGGCACCAAAT------------AATCGGCTACCTTAACTA---AACG------------TACATCCATGAACATCA-CTCATGTACATGTGGCGG-----------AAAATCAAAA-TCAAT------------------CAAAAA------------TCAGATCA-----AAAC-GT-----ATTTTCTAACCTTCTTCTATC---CTAAACTGAAAA---ACAATTCCA--TATGGGATT-C
droMoj3 scaffold_6540:5174303-5174687 + AGAACGCGGCCATGCCCTCGGGCATGTCATCTGTGCGAATCGATGAAATGGTTGGTAACAATGGCAGC-----GTCGC------CT----------------------CTG-----------------------GGT------------------------------------------------------------------CGAAGCCGACTGCAACTGAGCAGCCGTCGCAAGGGGCAACCAATCAGACAGTTACTTATGACCTTTCCAAGGCTGCACCAGACGAGGAGGTTAGAATCAAAACGTTGGCAGCATTCACTAGCGATTCGAAGTATTGGCACCAA------------CTAATCGGCTATCTTAACTA---AATGTA-CA------------------------TTCATGG----CGTGGCGGATAACTCAATTTAAAACAAAACAAAAA------CAAACAAATTAACCAAA------------ACAA-----TAATCAAATATGAAAGTATTTTCTAACCATCTTCTGTAA---TGACCTGAAAT--ATGTATTTCA--TATGGGATT-C
droGri2 scaffold_14906:5126665-5127031 - AGAGTGCGGCAATGCCCTCAACATTGTCGTCCGTACGAATTGATGAAATGGTTGGTAATAATAACGGACCAGGGCCCC------CA----G-------------------------------------------GGT------------------------------------------------------------------CGAAGCAGTCTGCCGCTGAGCAG---GCGCAAAGCGCACCCATGCAGACAGTTACTTATGACCTTTCCAAGGCTGCGCCAGATGAGGAGGTTAGAATCAAAACGTTGGCAGCATTTAC------TACGATGTATTGGCACCAAAT--------AA-TAATCGGCTACCTGAACTA---AATCTACTACTACTCGTCCATCCATGAACATCA-CTCACGTACTATTGGCGG------------------------AAA------------------ACAAATCA--------ATCG-----------AAC---TGA---TTTTTCTAACCTTCTTATCTCT-TCTTAACTGAAAT---GGAATTCCA--AATGGGATT-C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGAATGCGGCCATGCCATCGACAATGTCGTCCGTTCGCATCGATGAAATGGTTGGTAATGCTAATGGT-----GATCC------CG----CCGC---C---------GCTGCGGACGCGAAAGCCCCGAACCCGGTTACGGG---TCAAGTTCAA------------------GTTCCGGTTGCGGACTCCGG--------------------------------------------C------GTCCAAACCGTTACTTATGATTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAAAACGTTGGCCGCATTCCCTAGCGTTACGAAGCATTGGCACCAGAC--------ACTCAATCGGTTA-----ACAA---AATTCATCATT-----------------------CCCTCGTCC-TG-------CGATCCGATCCAAGTCGAAACTAAAA------------------CCAAATCCAA------ATCA-----------AAAT-TTAA---AATTTCTAACCTCTTTTTCTTG-TTCAACACGAAGA---AACATTGCTTTTGTGGGATCACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................GACAATGTCGTCCGTTCGCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.................................................................................................................................................................................................................................................................CTTATGATTTTCCCAAGGGCT................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA---AACATTGCTTTTGTGGGAT...2211.00100100000000000000
.....................................................................................................................................................................................TGCGGACTCCGG--------------------------------------------C------GTCCAAACCGTT......................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.....................................................................................................................................................................................TGCGGACTCCGG--------------------------------------------C------GTCCAAACCGTTACT...................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
.....................................................................................................................................................GTTCAA------------------GTTCCGGTTGCGGACTCCGG--------------------------------------------C------..................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.............................................................................................................................................................................................................................................................GTTACTTATGATTTTCCCAAG....................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.............................................................................................................TGCGGACGCGAAAGCCCCGAACCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
droSec2
AGAATGCGGCCATGCCATCGACAATGTCGTCCGTTCGCATCGATGAAATGGTTGGTAATGCTAATGGT-----GATCC------C----------------------GCTGCGGACGCGAAAGCCCCGAACCCGGTTACGGG---TCAAGTTCAA------------------GTTCCGGTTGCGGACTCCGG--------------------------------------------C------GTCCAAACCGTTACTTATGATTTTCCCAAGGGCTCGCTAGATGAGGAGGTTAGAATCAAAACGTTGGCCGCATTCCCTAGCGTTACGAAGCATTGGCACCAGAC--------ACTCAATCGGTTA-----ACAA---TATTCATCATT-----------------------CCCTCGTCC-TA-------CGATCCGATTAAATTGAAAACTAAAA------------------CCAAATCAAA------ATCA-----------AAAT-TTAA---AATTTCTAACCTCTTTTTCTTG-TTCAACACGAAGA---AACATTGCTTTTGTGGGATCACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................TGCGGACGCGAAAGCCCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020002
...............................................................ATGGT-----GATCC------C----------------------GCTGCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...........................................TGAAATGGTTGGTAATGCTAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.....................CAATGTCGTCCGTTCGCATCGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.............................................................TAATGGT-----GATCC------C----------------------GCTGCGGACGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
...........................................................................................................................................................................................................................................................................................GATGAGGAGGTTAGAATCAAAACGTT.................................................................................................................................................................................................................................................................................2611.0010100
.................................................................GGT-----GATCC------C----------------------GCTGCGGACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
................ATCGACAATGTCGTCCGTTCGCATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.....................................................................................................................................GGTTACGGG---TCAAGTTCAA------------------GTTCCG...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
..........................................ATGAAATGGTTGGTAATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
dm3
AGAATGCGGCCATGCCATCGACAATGTCGTCCGTTCGCATCGATGAAATGGTTGGTAATGCTAATGGT-----GATCC------CG----CCGC---C---------GCTGCGGATGCGAAAGCCCCGAACCCGGTTACGGG---TCAAGTTCAA------------------GTTCCGGGTGCGGACACCGG--------------------------------------------C------GTCCAAACCGTTACTTATGATTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAAAACGTTGGCCGCATTCCCTAGCGTTACGAAGCATTGGCACCAGAC--------ACTCAATCGGTTA-----ACAA---AATTCATCATT-----------------------CCCTCGTCC-TG-------CGATCCGATCCAAGTCGAAACTAAAT------------------CCAAATCCAA------ATCA-----------AAAT-TTAA---AATTTCTAACCTCTTTTTCTTG-TTCAACACGAAGA---AACATTGCTTTTGTGGGATCACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........ATGCCATCGACAATGTCGTCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TACTTATGATTTTCCCAAGGGCTCGCCA...........................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000100000
............TGCCATCGACAATGTCGTCCGTTCGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CATGCCATCGACAATGTCGTCCGTTCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GGTTAGAATCAAAACGTT.................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA---AACATTGCTTTTGTGGGA....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..................................................................................................................................CCCGGTTACGGG---TCAAGTTCAA------------------GTTCCGG..................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TTCCGGGTGCGGACACCGG--------------------------------------------C------GTC...............................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ATGCCATCGACAATGTCGTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................ATGATTTTCCCAAGGGCTCGCC............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCC-TG-------CGATCCGATC..........................................................................................................................................1511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GCGGCCATGCCATCGACAATGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TCCGGGTGCGGACACCGG--------------------------------------------C------GTCCAAACCGT.......................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGCGGCCATGCCATCGACAATGTCGTCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AATGCGGCCATGCCATCGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GCCATGCCATCGACAATGTCGTCCGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
...............................CGTTCGCATCGATGAAATGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................G---TCAAGTTCAA------------------GTTCCGGGT................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................ATCGACAATGTCGTCCGTTCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GTTCGCATCGATGAAATGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................CCAAGGGCTCGCCAGATGAGGA...................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTCGAAACTAAAT------------------CCAAATCCAA------A.......................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CC-TG-------CGATCCGATCCAAGTCG...................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACACGAAGA---AACATTGCTTT...........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
................................................TGGTTGGTAATGCTAATGGT-----GATCC------CG----C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CAAACCGTTACTTATGATTTTCCCAAGGGC.................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CATGCCATCGACAATGTCGTCCGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................TTTTCCCAAGGGCTCGCCAGATGAGGAGGC................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................CTCGCCAGATGAGGAGGTTA..............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TGCGAAAGCCCCGAACCCGGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AGGGCTCGCCAGATGAGGAG..................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................TGTCGTCCGTTCGCATCGATGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TACTTATGATTTTCCCAAGGGCTCGC.............................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GTTCGCATCGATGAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TTGGCACCAGAC--------ACTCAATCGG........................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGAATGCGGCCATGCCATCGACAATGTCGTCCGTTCGCATCGATGAAATGGTTGGTAATGCTAATGGT-----GATCC------CG----CCGC---C---------GCTGCGGACGCGAAAATCCCGATCCCGGTTACGGG---TCAAGTTCAA------------------GTTCCGGTTGCGGACTCCGG--------------------------------------------C------GTCCAAACCGTTACTTATGATTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAAAACGTTGGCTGCATTCCATAGCGTTACGAAGCATTGGCACCAGAC--------ACTCAATCGGTTA-----ACAA---AATTCATCATC-----------------------CCCTCGTCC-TG-------CGATCTGATCCAAGTCGAAACTAAAT------------------CAAGATCCAATACCAAATCA-----------AAAT-TAAA---AATTTCTAACCTCTTTTTCTCG-TTCAACACGAAGA---AACATTGCTTTTGTGGAATCACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................AATTCATCATC-----------------------CCCTCGTCC-TG-------C...................................................................................................................................................2311.0010001000
.................................................................................................................................................................................................................................................................CTTATGATTTTCCCAAGGGCT................................................................................................................................................................................................................................................................................................................2111.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................ATCATC-----------------------CCCTCGTCC-TG-------CGAT................................................................................................................................................2111.0010000010
............................................GAAATGGTTGGTAATGCTAATGGT-----.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
..................CGACAATGTCGTCCGTTCGCATCGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000
......................................................................................................................................................................................................................................................................................................TAGAATCAAAACGTTGGCTGCATTCC......................................................................................................................................................................................................................................................................2611.0010000010
...........................................................................................................................................................................................................................................................................................GATGAGGAGGTTAGAATCAAAACGTT.................................................................................................................................................................................................................................................................................2611.0010100000
..........................................ATGAAATGGTTGGTAATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
droYak3
AGAATGCGGCCATGCCATCGACAATGTCGTCCGTTCGGATCGATGAAATGGTTGGTAATGCTAATGGT-----GATCC------CG----CCGC---C---------GCTGCGGACGCGAAAATCCCGATCCCGGTTACGGG---TCAAGCTCAA------------------GTTCCGGGTGCGGACTCCGG--------------------------------------------C------GTCCAAACCGTTACTTATGATTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAAAACGTTGGCTGCATTCCATAGCGTTACGAAGCATTGGCACCAGAC--------ACTCAATCGGTTA-----ACAA---AATTCATCATC-----------------------CCCTCGTCC-TG-------CGATCTGATCCAAGTCGAAACTAAAT------------------CCAAATCCAATACCAAATCA-----------AAAT-TTAA---AATTTCTAACCTCTTTTTCTTG-TTCAACACGAAGA---AACATTGCTTTTGTGGGATCACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................GACGCGAAAATCCCGATCCCGGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.00300000000003
..........................................................................................................................................................................................................................................................................TTCCCAAGGGCTCGCCAGATGAGGAGG.................................................................................................................................................................................................................................................................................................2712.00200000000002
...............................CGTTCGGATCGATGAAATGGTTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..............................CCGTTCGGATCGATGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000
...................GACAATGTCGTCCGTTCGGATCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
droEug1
AGAATGCGGCCATGCCTTCGACAATGTCGTCCGTTCGGATTGATGAAATGGTTGGTAATGCTAATGGT-----GACCC------CG----TCGC---CGCTGCC---GCCGCGGATGCAAAGATCCCG------GGTCCGGG---TCAAGTTCAA------------------GGTCCGGTTGCGGACTCTGG--------------------------------------------G------GTCCAATCCGTTACCTATGACTTTCCCAAGGGCTCGGCAGATGAGGAGGTTAGAATCAAAACGTTGGCTGCATTCCCTAGCTTTACAAAGCATCGGCACCTAAC--------AACCAATTGGTTA-----ACCAAAAAATTCATCA------------------------TC--TCGTCC-TG-------CGACCTGATCCAAGTCAAAACTAAAT------------------CCAAATCAAT------ATCG-----------AAAT-TACA---AGTTTCTAACCTCTTTTTCTTG-TTCAACACGAAGA---AACATTGCTTTTGTGGGATCACSizeHit CountTotal NormTotal
No Reads
droBia1
AGAACGCGGCCATGCCCTCGACCATGTCCTCCGTGCGGATCGATGAAATGGTTGGTAATGCTAGTGGT-----GACCC------CA----CCGC---CGCCGCC---GCCGCGGAAGCGAAGCCCCCT------GCTCCGGGGGCTCAAGCTCAA------------------GGTCCGGTCGCGGACTCCGG--------------------------------------------G------GTCCAGACCGTGACCTATGACTTTCCCAAGGGCTCGGCAGACGAGGAGGTTAGAATCAAAACGTTGGCTGCATTCCCTAGCGTTACGAAGCATTGGCACCTGA-------ACTCTCGATTGGTTA-----ACCA---AATTCATCA------------------------TCTCTCGTCC-AG-------CAAACTGATCCAAATCGAAACTAAAT------------------CCGAATCAAT------ATCG-----------AAAT-TACA---AGTTTCTAACCTCTTTTTCTTG-TTCAACACGAAGA---GACATTGCTTTTGTGGGATCACSizeHit CountTotal NormTotal
No Reads
droTak1
AGAATGCGGCCATGCCCTCGACAATGTCGTCCGTGCGGATCGATGAAATGGTTGGTAATGCTAATGGT-----GACCC------CG----CCGC---C---ACC---GCCGCGGATGCGAAGGCCCCG------GGTCAGGG---GCAAGTTCAA------------------GTTCCGGCTGGGGACTCCGG--------------------------------------------G------GTCCAGTCCGTTACTTATGACTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAAAACGTTGGCCGCATTCCCTAGCCTTACGAAGCATTGGCACCTGAC--------TCTCGATTGGTTA-----ACCA---AATTCATCA------------------------TCTCTCGTCC-TG-------CGATCTGATCCAAGTCAAAACTAAAT------------------CGAAATCAAT------ACCG-----------AAAT-TACA---AACTTCTAACCTCTTTTTCTTG-TTAAACACAAAGA---AACATTGCTTTTGTGGGATCACSizeHit CountTotal NormTotal
No Reads
droEle1
AGAATGCGGCCATGCCCTCGACAATGTCGTCCGTGCGGATCGATGAAATGGTTGGTAACACTAGTGGT-----GACCC------CG----CCGC---C---------GCTGCGGACACGAAGCTGACGGGCCCGGC---------TCAGGCTCAGGCACAGGTTTCTA------ATCCTGTTCCGGAGTCCGG--------------------------------------------C------GTCCAGTCCGTTACTTATGACTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAGAACGTTGGCAGCATTCCCTAGCGTTACGAAGCATTGGCACCTGAC--------TATCAATTGGTTA-----ACCA---AATTCATCA------------------------TCTATCGTCC-TG-------CGATCTGATCCACGTCAAAACTAAAT------------------CCAAAT------------CA-----------AATT-CAAA---AAATTCTAACCTCTTTTTCTTG-TTTTACACGAAGA---AAGATTATATTTGTGGGATCACSizeHit CountTotal NormTotal
No Reads
droRho1
AGAATGCGGCCATGCCCTCGACCATGTCGTCTGTGCGCATCGATGAAATGGTTGGTAATACTAGTGGT-----GACCC------CG----CCGT---C------------GCGGATACGAAGCTCACGGTCCCGGGTTCGGG---TCCGGGTCAGGCACAGAATCCTGTTCCTGCTCCTGTTCCGGAATCCGG--------------------------------------------C------GTCCAGTCCGTTACTTATGACTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAGAACGTTGGCCGCATTCCTTAGCGTTACGAAGCATTGGCACCTGCC--------TATCGATTGGCTA-----ACCA---AATTCATCA------------------------TCTATCGTCT-TG-------CGATCTGATCCAAGTCCAAACTAAAT------------------CCAAAT------------CA-----------AAAT-CAAA---AGTTTCTAACCTCTTTTTCTTG-TTTTACACGAAGA---AACCTTGTAATTGTGGGATCACSizeHit CountTotal NormTotal
No Reads
droFic1
AAAACGCCGCGATGCCATCGACAATGTCATCCGTGCGCATCGATGAAATGGTTGGTAATGCTAGTGGT-----GATCC------CG----CCGT---C---------GCCGCGGATGCGAAGGCCCCG------GGTCCGGG---TCAAGCTCAAGATCCGACTTCGACTACGGCTCCGGCTACGGATGCCGG--------------------------------------------T------GTCCAGTCGGTTACTTATGACTTTCCTAAGGGCTCGCCAGATGAGGAGGTTAGAATCAGAACGTTGGCCGCAATCCCTAGCCTTACAAAGCATTGGCACCTGAC--------TCTCGATTGGTTA-----ACAA---AATTCATCA------------------------CCTCTTGTCC-TG-------CGATCTGATCCAAGTCAAAGCCTAAT------C-----------AAAAATCCAA------ATCA-----------AATT-CAAC---AGTTTCTAACCTCTTTTTCTTG-TCTCACACGAAAAGAAAACATTGCATTTGTGGGATCAASizeHit CountTotal NormTotal
No Reads
droKik1
AGAATGCCGCCATGCCCTCGACCATGTCGTCTGTTCGCATCGATGAAATGGTTGGTAATGCTAATGGC-----GCCAC------TG----CCGCCGCCGCTGCC---GCTCCGGACACGAAGGTCCCGCTAGCGGGTGTGGG---TCAAGTTCCCGGCCAGGCCTCTGGCCAGGTTCCGGTTCCGGGTTCGGA--------------------------------------------T------CAGCAGTCCGTTACCTATGACTTTCCCAAGGGCTCGCCAGACGAGGAGGTTAGAATCAGAACGTTGGCCGCATTTCCTAGCGTTACGAAGCATTGGCACCCGAC--------TCTCAATTGGTTA-----ACCA---AAGTCATCA------------------------TCTCTCAACC-AG-------CGACCTAAACCAAGTTCAAAATTAAT------------------CCAAAT------------TT-----------AAAT-CAAA---AGTTTCTAACCTCTTTT-CTCGTTTGTACTTGAAAG---AACATTGCATTTGTGGCATCACSizeHit CountTotal NormTotal
No Reads
droAna3
AGAACGCGGCCATACCCTCGACCATGTCCAGTGTTCGCATCGATGAAATGGTTGGTAATACTAACGGC-----GGCAACCC---CG----CCGC---T---------GCTCCGGATGAAAAACCGCCG------GGTACGAC---TCCGGTTCAG------------------GCCTCGG------------GGCAAT--------------------CCGAGATG---CCGCAAGGC------GTGCAGTCCGTAACCTATGATTTCCCAAAGGGCTCGCCAGATGAGGAGGTTAGAATCAGAACGTTGGTCGCATTTCCTAGCGTTACGAAGCATTGGCACCTGAC-----AACTCTCAATTGGTCCT----ACCA---AATCGA---------------------ACATCATCTCTCGACCCT---------------------GTCGAGGCTA-AT------------------CCAAATCTAA------TTCG-----------AAAT-CAAA---AGTTTCTAACCTCTTTTTCTC---T--------------GACATTTCATTGGTGGAATACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................GTCCGTAACCTATGATTTCCC........................................................................................................................................................................................................................................................................................................................2111.001010000
......................................................................................................................................................................................................................................................................................CGCCAGATGAGGAGGTTAGAATC.........................................................................................................................................................................................................................................................................................2311.001100000
droBip1
AGAACGCGGCCATGCCCTCGACCATGTCCAGCGTTCGCATCGATGAAATGGTTGGTAATACTAACGGC-----GGCAACAC---CG----CCGC---C---------GCTCCGGATGTAAAACCGCCG------GGTACGAC---TCCGGTTCAG------------------GTCTCGG------------GGCAAT--------------------CCGAGCTG---CCGCAAGGC------GTGCAGTCCGTTACCTATGATTTCCCAAAGGGCTCGCCAGATGAGGAGGTTAGAATCAGAACGTTGGTCGCATTTCCTAGCGTTACGAAGCATTGGCACCTGAC-----AACTCTCAATTGGTCCT----TCCA---AATTGA---------------------ACATCATCTCTCGACC---------------------CCGTCGAGACTAATC------------------AGAAATCTAA------TTCG-----------AAAT-CAAA---AGTTTCTAACCTCTTTTTTTC---T--------------GACATTTCATTGGTGGAATACCSizeHit CountTotal NormTotal
No Reads
dp5
AGAGCGCGGCCATGCCCTCGACGATGTCCTCCGTGCGCATCGATGAAATGGTTGGTAATGATACTGCC-----GCCCC------CA----CTGC---C---------GTTGCCCC--------------------------------------------------------------------------------AATCAACACCATGCCGCCCGTCGCCGAACAG---GCGGAGGGCGTGCCCCTGCAGGCAGTAACCTATGACTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAGAACGTTGGCAGCATTCCCTAGCGTTACGAAGCATTGGCACCAGTC--------TCCCAATTGGCTATCCGA-CAA-ACAATTCG----------TTCA-------------TCTGTC---------------AATGTGA-CCAAATCAAACAAAAAA------------------CCTAA------------ACA-----------AAAT-CAAA---AGTTTCTAACCTCTTATTCGC---TC----------------------ATTTTGGGACCACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................GTC--------TCCCAATTGGCTATCCGA-CAA-AC.........................................................................................................................................................................................................2611.0010100000000
droPer2
AGAGCGCGGCCATGCCCTCGACGATGTCCTCCGTGCGCATCGATGAAATGGTTGGTAATGATACTGCC-----GCCCC------CA----CTGC---C---------GTTGCCCC--------------------------------------------------------------------------------AATCAACACCATGCCGCCCGTCGCCGAACAG---GCGGAGGGCGTGCCCCTGCAGGCAGTAACCTATGACTTTCCCAAGGGCTCGCCAGATGAGGAGGTTAGAATCAGAACGTTGGCAGCATTCTCTAGCGTTACGAAGCATTGGCACCAGTC--------TCCCAATTGGCTATCCGA-CAA-ACAATTCG----------TTCA-------------TCTGTC---------------AATGTGA-CCAAATCAAACAAAAAA------------------CCTAA------------TCA-----------AAAT-CAAA---AGTTTCTAACCTCTTATTCGC---TC----------------------ATTTTGGGACCACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................GTCCTCCGTGCGCATCGATGAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
droWil2
AAAGTGCTGCAATGCCATCGACTATGTCGTCTGTGCGCATCGATGAAATGGTTGGTAATAATGCCACTGCT--GCACC-ACCAGCTCTGGCTAG---TGTTGCCCCCGAGGGGGGTACAAAACTC---------TTTATGGA---ACAGCCACAG------------------CAAC--------------------------------------------------------AGGGTGTACCCCTGCAGACAGTCACTTATGACCTAACCAAGGGTGCGCCAGATGAGGAGGTTAGAATCAAAAAGTTGGCAGCATTTAA--GGCA---AACGTATTGGCACCATCGAACCCAAAACACAATTGGCACT----A------TATAA-------------------------------------------------------ATCAAAATCGAAA-TCGATCATCATCCAACAAAGTGACCA------C------ATCA-----------AAAT-TTCG---AAATTCTAACCTCTTTCTCTTT-CTTAA--------------------ATTATCTGGTTAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........AATGCCATCGACTATGTCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.....................................................................................................................CAAAACTC---------TTTATGGA---ACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.....................................................GGTAATAATGCCACTGCT--GCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
..........................................................................................................................................................................................................................................................................................................................................AACGTATTGGCACCATCGAAC.......................................................................................................................................................................................................................................2111.00100100
droVir3
AGAATGCGGCCATGACCTCTGGGATGTCATCTGTGCGCATCGATGAAATGGTTGGTAATAATAGCACC-----GGCGC------CT----CTG-----------------------------------------GGT------------------------------------------------------------------CTAAGCCGCCTTCAGCTGAACAG---CCACAAGGCGCACCTATGCAGACAGTTACTTATGATCTTTCCAAAGCTGCGCCAGATGAGGAGGTTAGAATCAAAACGTTGGCAGCATTCACTAGCGATACGAAGTATTGGCACCAAAT------------AATCGGCTACCTTAACTA---AACG------------TACATCCATGAACATCA-CTCATGTACATGTGGCGG-----------AAAATCAAAA-TCAAT------------------CAAAAA------------TCAGATCA-----AAAC-GT-----ATTTTCTAACCTTCTTCTATC---CTAAACTGAAAA---ACAATTCCA--TATGGGATT-CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............GACCTCTGGGATGTCATCTGTGCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GATCTTTCCAAAGCTGCGCCA...........................................................................................................................................................................................................................................................................................................2111.001000000000001000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AAAGCTGCGCCAGATGAGGAG..................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TA---AACG------------TACATCCATGAACA...........................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................CAGCTGAACAG---CCACAAGGCGCACC...................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................................................................................................................................ATGATCTTTCCAAAGCTGCGC.............................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
............TGACCTCTGGGATGTCATCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AGAACGCGGCCATGCCCTCGGGCATGTCATCTGTGCGAATCGATGAAATGGTTGGTAACAATGGCAGC-----GTCGC------CT----------------------CTG-----------------------GGT------------------------------------------------------------------CGAAGCCGACTGCAACTGAGCAGCCGTCGCAAGGGGCAACCAATCAGACAGTTACTTATGACCTTTCCAAGGCTGCACCAGACGAGGAGGTTAGAATCAAAACGTTGGCAGCATTCACTAGCGATTCGAAGTATTGGCACCAA------------CTAATCGGCTATCTTAACTA---AATGTA-CA------------------------TTCATGG----CGTGGCGGATAACTCAATTTAAAACAAAACAAAAA------CAAACAAATTAACCAAA------------ACAA-----TAATCAAATATGAAAGTATTTTCTAACCATCTTCTGTAA---TGACCTGAAAT--ATGTATTTCA--TATGGGATT-CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AGAGTGCGGCAATGCCCTCAACATTGTCGTCCGTACGAATTGATGAAATGGTTGGTAATAATAACGGACCAGGGCCCC------CA----G-------------------------------------------GGT------------------------------------------------------------------CGAAGCAGTCTGCCGCTGAGCAG---GCGCAAAGCGCACCCATGCAGACAGTTACTTATGACCTTTCCAAGGCTGCGCCAGATGAGGAGGTTAGAATCAAAACGTTGGCAGCATTTAC------TACGATGTATTGGCACCAAAT--------AA-TAATCGGCTACCTGAACTA---AATCTACTACTACTCGTCCATCCATGAACATCA-CTCACGTACTATTGGCGG------------------------AAA------------------ACAAATCA--------ATCG-----------AAC---TGA---TTTTTCTAACCTTCTTATCTCT-TCTTAACTGAAAT---GGAATTCCA--AATGGGATT-CSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................ATGAAATGGTTGGTAATAATAACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110

Generated: 05/18/2015 at 08:42 AM