ID:

dsi_18503

 Coordinate:

2r:4778349-4778567 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-26.7 -26.6 -26.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCGACTAACGAGCGGTCACATTAAAAGTGCGTTTCTCGGCGCATTTGCAGGTATTGAGTGTGACTCCGTTTTGAAAATTTGTTTATCCAATTTAAAGCCGTGACCGGAACCCTCCTGAGGTGTTAAAGTTTAGTTTAAGTGTCCCCCCACCTGTGCAACGTGTTTTCGACATGTCACCCGGGGCCTTGTCAGCAAAAAACTCGCTTGAAAATTCAATAGTGGCCGCTGTCTGGAGCGGCGGTCGTCGTCAATTACTGGGTCCCTTGGTTTACATAAGAGCGAAAGAGTCGGCTAGTGTGGCGTTGCAGAAATGGCGTCG
********************************************************...((.((...((((((((...(((......))))))))))).)).)).(((....)))..(((((....(((((.(((((((.(((((.......(((..(((((((...))))))))))..)))))))))..)))...)))))))))).........******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 M023
head
 O001
Testis
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR1275487
Male larvae		 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR1275483
Male prepupae		 GSM343915
embryo
..........................................................................................................................................................................................................................................................................................AAGGGTCGGGTAGTGTGGCCTT............... 22 3 2 141.50 283 143 96 40 0 0 0 0 4 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................AAGGGTCGGGTAGTGTGGCCT................ 21 3 3 19.00 57 35 14 8 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................AGGGTCGGGTAGTGTGGCCTT............... 21 3 2 18.00 36 17 15 4 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................AAGGGTCGGGTAGTGTGGCC................. 20 3 6 16.83 101 75 9 17 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................AAGGGTCGGGTAGTGTGGCCTTG.............. 23 3 1 10.00 10 1 9 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................AGGGTCGGGTAGTGTGGCCTTG.............. 22 3 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................CGAAAGAGTCGGCTAGTGTGGCG................. 23 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GTCAATTACTGGTTCCCTTGGT................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................TCGGCGCATTTGCAGGTATTG....................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................AGGGTCGGGTAGTGTGGCCT................ 20 3 5 2.00 10 7 2 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................ATAAGAGCGAAAGAGTCGGCT.......................... 21 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0
........................................................AGTGTGACTCCGTTTTGAAAA.................................................................................................................................................................................................................................................. 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAAACTCGCTTGAAAATTCA........................................................................................................ 20 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTTAAAGCCGTGACCGGAACC................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................AAAGAGTCGGCTAGTGTGGCGTT............... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................TGGGGCCGTGACCGGAACCCTCCT........................................................................................................................................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................CGAAAGAGTCGGCTGGTGTGG................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................AGGTATTGAGTGTGACTCC............................................................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................GCAGGTATTGAGTGTGACT.............................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................AAGGGTCGGGTAGTGAGGCGTT............... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CCTTGTCAGCAAAAAACT...................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................GTCGGGTAGTGTGGCCTTG.............. 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................ATTGAGTGTGACTCCGTTTTGAAAATT................................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................AGAAGTGCGTTTCTCGGCG...................................................................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AATTCAATAGTGGCCG.............................................................................................. 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................TTAAAAGTGCGTTTCTCGGCG...................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................CATAAGAGCGAGAGAGTCGG............................ 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................TGTGGCGTTGCAGAAATGGCGA.. 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................CGTCGTCAATTACTGGGTCCC........................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................AAGAGCGAAGGAGTCGGCTA......................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................GTCGGGTAGTGTGGCCTT............... 18 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................AAGCGTCGGGTAGTGTGGCCTTG.............. 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TTACATAAGAGCGAAAGAGTC.............................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................AAGAGCGAAAGAGTCGGCTAG........................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................AGGTATTGAGTGTGACTC............................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................AGAGTCGGGTAGTGAGGCCTTG.............. 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATTTAAAGCCGTGACCGGAAC................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GACTCCGTTTTGAAAATTTG.............................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................TGTGACTCCGTTTTGAAAATT................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................GTCGGGTAGTGAGGCCTTG.............. 19 3 9 0.78 7 2 2 0 0 0 0 0 0 0 3 0 0 0 0
..............................................................................................................................................................................................................................................................................................GTCGGGTAGTGAGGCCTT............... 18 3 20 0.75 15 0 10 4 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................AGGGTCGGGTAGTGTGGCC................. 19 3 13 0.69 9 8 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................GGGTCGGGTAGTGTGGCCTT............... 20 3 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................AAGGGTCGGCTAGTGAGG................... 18 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................TTGCAGGTGTTGGGTGTGACT.............................................................................................................................................................................................................................................................. 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................GAGTGAGACTCCGTCTGGAAA................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................AAGAGTCGGGTAGTGAGG................... 18 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CCGGAACCCTCCTGAGAC...................................................................................................................................................................................................... 18 2 5 0.40 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................AAGGGTCGGGTAGTGTGG................... 18 2 6 0.33 2 0 0 0 0 0 1 0 1 0 0 0 0 0 0
........................................................................GAAAATTTGTTTATC........................................................................................................................................................................................................................................ 15 0 7 0.29 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................GGGCCAATGTGGCGTTGCAGA.......... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................TGATACCGTTTTGAAAACTTGT............................................................................................................................................................................................................................................. 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................TGACTATGTTATGAAAATTTGT............................................................................................................................................................................................................................................. 22 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GGCGCGGCGGTCGCCGTA...................................................................... 18 3 20 0.20 4 0 0 0 0 0 0 0 0 3 0 1 0 0 0
..............................................................................................................................................................................................................................................................................................GTCGGGTAGTGTGGCCTTGG............. 20 3 10 0.20 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGTGGCCGATGTATGGAGCG.................................................................................. 20 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................GCGGGCGTCGTCAAT................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................TAAGGGTCGGCTAGTGAGG................... 19 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................AAGAGTCGGGTAGTGAGGG.................. 19 3 14 0.14 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................GGTCGGGTAGTGTGGCCTT............... 19 3 17 0.12 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................CCACGTCAATTACTGGGGC.......................................................... 19 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................TGTCTGGAGGGGCGG.............................................................................. 15 1 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GGTCCCGTGGTTAACA.............................................. 16 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................................................GTCGGTTAGTGAGGCCTTG.............. 19 3 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................GGGTCGGGTAGTGTGGCCT................ 19 3 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................GTGTTATAGTTAGGTTTAA..................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

AGCTGATTGCTCGCCAGTGTAATTTTCACGCAAAGAGCCGCGTAAACGTCCATAACTCACACTGAGGCAAAACTTTTAAACAAATAGGTTAAATTTCGGCACTGGCCTTGGGAGGACTCCACAATTTCAAATCAAATTCACAGGGGGGTGGACACGTTGCACAAAAGCTGTACAGTGGGCCCCGGAACAGTCGTTTTTTGAGCGAACTTTTAAGTTATCACCGGCGACAGACCTCGCCGCCAGCAGCAGTTAATGACCCAGGGAACCAAATGTATTCTCGCTTTCTCAGCCGATCACACCGCAACGTCTTTACCGCAGC
********************************************************************************************************...((.((...((((((((...(((......))))))))))).)).)).(((....)))..(((((....(((((.(((((((.(((((.......(((..(((((((...))))))))))..)))))))))..)))...)))))))))).........******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...............................................................................................................................................................................................................................................................ACCCAGGGAACCAAATGTATTC.......................................... 22 0 1 2.00 2 0 0 2 0 0 0 0 0
.....................................................................................................................................................................................................................................GACCTCGCCGCCAGCAGCAGTT.................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0
.......................................................CTCACACTCAGGCAAAACTTT................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TCCCAGGGAACCAAATGTATTCT......................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................TAAACAAATAGGTTGAGTTTC.............................................................................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................CGCCGCCAGCAGCAGTTAATG................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0
.............................................................................................................................................AGGGGGGTGGACACGTTGCAC............................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................CCGATCACACCGCAACGTCTT......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGAGCGAACTTTTAAGTTATC.................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................GACCCAGGGGACCAAGTGTAT............................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................CAAATGTATTCTCGCTTTCTC................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0
................................................................................................................ACGACTCCACAATTTCAGGTC.......................................................................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0
...............................................................................AAAAATAGGCTAAATTTCGG............................................................................................................................................................................................................................ 20 2 2 0.50 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................GTTGCGCAGAAGCTGTACAGA............................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0
...................................................................................................................................TCAAACTCACAGGGG............................................................................................................................................................................. 15 1 4 0.25 1 0 0 0 0 0 0 0 1
...................TAATTTTCAGGCAACGAG.......................................................................................................................................................................................................................................................................................... 18 2 18 0.17 3 0 0 0 0 3 0 0 0
.........................................................................................................................................................................................................................................................................CCAGGTGTGTTCTCGCTTTC.................................. 20 3 10 0.10 1 1 0 0 0 0 0 0 0
...............................AAAGAGCCGAGTAAACGT.............................................................................................................................................................................................................................................................................. 18 1 11 0.09 1 0 0 0 0 0 1 0 0
..............................................................................................................................................................GCACAAAAGCTGCAC.................................................................................................................................................. 15 1 11 0.09 1 0 0 0 0 0 0 1 0
................................AAGAGCCGCGCAGACGTCA............................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 03:14 AM