ID:

dsi_18491

 Coordinate:

x:7641628-7641888 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-43.4 -43.4 -43.4

Flybase annnotation

CDS [x_7641607_7641627_-]; exon [x_7641607_7641627_-]; intron [x_7641304_7641606_-]; CDS [x_7641889_7642064_-]; exon [x_7641889_7642064_-]; intron [x_7641628_7641888_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#####################-----------------------------
GGCGAAAGGAGATCGCCGGAGTGCTACACGATTTGCGCGAAAAAGAAAAGGTACCAACTGTCTGGAAAACGCCAGGCAAACTGAGAATATAAACTCCCCCACCTGTTAGAGTTGCTCTAGATCTAGATCGTTTCTAGACCGTTCCTTGTTGGCCTTACGCCGCGCCCTTCAGTTCTTCCATAGTCGTTCCCCCTTTTTCACCCACTTGGTCGTTGTTGATGAAATTCTAATAATTTGGTATATACTCTCTCTCCAAAAACAAAACGATACAAAATTCCCCTGTTTACAATAAAACATCCAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTCCAACAGGTTTCTCTTGCC
**************************************************..(((((.(((((((......)))))))(((((((....................((((((...)))))).((((((.....))))))........(((.(((.....))))))...)))))))...............................)))))(((((((((((............(((((..............)))))((((....((........))...))))..........))).)))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
....AAAGGAGATCGCCGGAGTGCT................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
............................CGATTTGCGCGAAAAAGAAAAGGAACT.................................................................................................................................................................................................................................................................................................................. 27 2 1 1.00 1 0 0 1 0 0 0
......................GGTACACGATTTGCGC................................................................................................................................................................................................................................................................................................................................... 16 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................................................................................AATTTGGTATATACTCTCTCT............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................TTTGTAGATGAAATTCTAAGAA................................................................................................................................ 22 3 6 0.17 1 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................AAAAACAAGACGATACAAG........................................................................................ 19 2 7 0.14 1 0 0 0 0 1 0
...........................................................................................................................................CGTTCCTTCTTAGCGTTAC........................................................................................................................................................................................................... 19 3 8 0.13 1 0 1 0 0 0 0
....................................................................................................................................TGTAGACCGTCCCTTGCT................................................................................................................................................................................................................... 18 3 20 0.10 2 2 0 0 0 0 0
...................................................................................................................................TTGTAGACCGTTGCTTGCT................................................................................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0
............................................GAAAAGGTACCATCGGGCT.......................................................................................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 1
.........................................................................................................................................................ATTACGACGCGCCCTCCA.............................................................................................................................................................................................. 18 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

CCGCTTTCCTCTAGCGGCCTCACGATGTGCTAAACGCGCTTTTTCTTTTCCATGGTTGACAGACCTTTTGCGGTCCGTTTGACTCTTATATTTGAGGGGGTGGACAATCTCAACGAGATCTAGATCTAGCAAAGATCTGGCAAGGAACAACCGGAATGCGGCGCGGGAAGTCAAGAAGGTATCAGCAAGGGGGAAAAAGTGGGTGAACCAGCAACAACTACTTTAAGATTATTAAACCATATATGAGAGAGAGGTTTTTGTTTTGCTATGTTTTAAGGGGACAAATGTTATTTTGTAGGTTGCTGCAATTCGCAAAGGTTTGGTAGCTTCTCCATTCGCGCAGGTTGTCCAAAGAGAACGG
**************************************************..(((((.(((((((......)))))))(((((((....................((((((...)))))).((((((.....))))))........(((.(((.....))))))...)))))))...............................)))))(((((((((((............(((((..............)))))((((....((........))...))))..........))).)))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
................................................................................................GGGGTGGCGAATCTCAA........................................................................................................................................................................................................................................................ 17 2 7 11.71 82 82 0 0 0 0 0 0 0 0
...............................................................................................GGGGGTGGCGAATCTCAA........................................................................................................................................................................................................................................................ 18 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................AGGTTGTCCAAAGAGA.... 16 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...........................................................................................TTGAGGTGGTGGCGAATCTCAA........................................................................................................................................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................AGGGGGTGGCGAATCTCAA........................................................................................................................................................................................................................................................ 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................CGCAACGAGATCTAGAACT.......................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................TGAGAGGGTGGCGAATCTCAA........................................................................................................................................................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................GGGGTGACAATCTCAACTAGAT.................................................................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................GGTGGCCAATCTCAA........................................................................................................................................................................................................................................................ 15 1 4 0.75 3 3 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................CTATGGTTTCAGGGGAAAAAT........................................................................... 21 3 3 0.67 2 0 0 0 0 2 0 0 0 0
.............................................................................................GCGGGGGTGGCGAATCTCAA........................................................................................................................................................................................................................................................ 20 3 6 0.67 4 2 0 0 0 1 0 1 0 0
............................................................................................TAAGGGGGTGGCGAATCTCAA........................................................................................................................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................................................GAGAGGGTGGCGAATCTCAA........................................................................................................................................................................................................................................................ 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGAACCAGCAAGTACGACTT.......................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................TTTTGTAGGTTGATGC....................................................... 16 1 5 0.20 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................AAAGTTCTGGCAAGG........................................................................................................................................................................................................................ 15 1 5 0.20 1 0 0 1 0 0 0 0 0 0
..............................................................................................AGAGGGTGGCGAATCTCAA........................................................................................................................................................................................................................................................ 19 3 11 0.18 2 2 0 0 0 0 0 0 0 0
..............................................................................................CGGGGGTGGCGAATCTCAA........................................................................................................................................................................................................................................................ 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................AAAGGTCTGGCAAGG........................................................................................................................................................................................................................ 15 1 12 0.08 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AGTGGGTGAACTAGCAATG................................................................................................................................................. 19 3 15 0.07 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................GGTTAACCAGCAACA................................................................................................................................................. 15 1 15 0.07 1 0 0 0 0 0 1 0 0 0
..............................................................................................AGGCGGTGGCGAATCTCAA........................................................................................................................................................................................................................................................ 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................GAAAGGTCTGGCAAGG........................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................................................................................................................CGCGCGGGCTGTCCTAAG....... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0
..............................................................................................TGGGGGTGGCGAATCTCAA........................................................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................AGTTTTGGTAGTTTCTCGAT.......................... 20 3 20 0.05 1 0 0 0 0 0 0 0 1 0
.................................................................................................GTGTGGAGAATCTCAA........................................................................................................................................................................................................................................................ 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................CTAGTTAAGAAGGTATCAG................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................GACAGGTTTGATAGCTTCT.............................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:7641578-7641938 - dsi_18491 GGCGAAAGGAGATCGCCGGAGTGCTACACGATTTGCGCGAAAAAGAAAAGGTACCAACTGT--CTGGAA-AACGCCA---------GG---------------------CAAACTGAGA---------A---------------TATAAAC--------------------------------------TCCCC-CA-CCTG---------TTAGAGTTGCTCTAGATCTAG--ATCGTTTCTAGACC---GTT--CCTTGTTGGCCTTACGCCGCGC-----------------------------------CCTTCAG--------TTCT---T-----CCAT--------A---------------GTCGTTC-----------C--------------------------------------C---------------------CCTTTTT-C-ACCCACTTG---GTCGTTGTT-GATGAAATTCTAATAATTTGGTATATACTCTCTC-TCCAA---------------------AAA-----CAAA--------ACGAT--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TGTTTA-CAA--TAAAACATCCAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTC--TTGCC
droSec2 scaffold_44:154807-155162 - GGCGAAAGGAGATCGCCGGAGTGCTACACGATTTGCGCGAAAAAGAAAAGGTACCAACTGT--CTGGAA-AACGCCA---------GG---------------------CAAAGTGAGA---------A---------------TATAAAC--------------------------------------TCCCC-TA-CCTG---------TAAGAGTTGCTCTAGA--------TCGTTTCTAGACC---GTT--CCTTGTTGGCCTTACGCCGCGT-----------------------------------CCTTCAG--------TTCT---T-----CCAT--------A---------------GTCGTTC-----------C--------------------------------------C---------------------CCTTTTT-C-ACCCACTTG---GTCGTTGTT-GATGAAATTCTAATAATTTGGTATATACTCTCTC-TCCAA---------------------AAA-----CAAA--------ACAAT--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TGTTATACAA--TAAAACATCCAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTC--TTGCC
dm3 chrX:8068551-8068905 - GGCGAAAGGAGATCGCTGGAGTGCTACACGATTTGCGCGAAAAAGAAAAGGTACCAACTGT--CTGGAA-AACGCCA---------GG---------------------CAAACTGAAA---------A---------------TATAAAC--------------------------------------TCCCCCTA-CCTG---------TTTGAGTTGCTCTAGA--------TCGTTTCTAGACC---GTT--CCTTGTTGGCCTTACGCCGCGC-----------------------------------CCTTCAG--------TTCT---T-----CCAT--------A---------------GTCGTTC-----------C------------------------------------------------------------CCTCTTT-C-TCCCACTTG---GTCGTTGTT-GATGAAATTCTAATAATTTGGTATATACTCTCTC-TCCAA---------------------AA------CAAA--------ACAAT--------AC---------------------AA-----------------------------------------AATTCCC-T----------------------------TGTTTTACAA--TAAAACATCCAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTC--TTGCC
droEre2 scaffold_4690:10439878-10440226 - GGAGAAAGGAGATCGCGGGTGTGCTACATGACTTGCGCGAAAAAGAAAAGGTACCATCTGG--CTGGAA-AACGCCA---------GG---------------------CAACCCGACC---------A---------------TATAAAC--------------------------------------TCCTA-AA-CCTA---------TTAGAGTTGCTCTAGA--------TCGTTTCTAGACC---GTT--CCTTGTTGGCCTTACGCCGCGC-----------------------------------TCTTGAG--------TTCT---T-----CCAT--------A---------------GT---TC-----------C--------------------------------------C----------CT---------C--ATTT-C-TCCCACTTG---GTCG---TT-GATGAAATTCTAATAATTTGGTATATACTTTCTC-TCCAA---------------------AA------CAAA--------ACAAT--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TATTATCCAA--TAAAACATCCAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTC--TTGCC
droYak3 v2_chrX_random_017:1324-1692 - GGCGAAAGGAGATCGCGGGCGTGCTGCACGATTTGCGCGAAAAAGAAAAGGTACCATCTGACACTGGAG-AACGCCA---------GG---------------------CAAATCGGCA---------A-----------TT--TACAAAC---------------------------------CTATATCCTA-TA-CCTA---------TTAGAGTTGCTCTAGA--------TCGTTTCTAGACC---GTT--TCTTGTTGGCCTTACGCCGCGC-----------------------------------TCTTGAG--------TTCT---T-----TCAT--------A---------------GTCGCCCCA---------G--------------------------------------C---------------------CCCTTTT-C-TGCCACTTG---GTCG---TT-GATGAAATTCTAATAATTTGGTATATACTTTCTC-TCCAA---------------------AAACAAAACAAA--------ACCAT--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TGTTAACCAA--TAAAACATCCAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTC--TTGCC
droEug1 scf7180000409064:147488-147822 - GGAAGAAGGAGATTGCTCAAGTGCTCCATGATTTGCGCGAAAAAGAAAAGGTAACAACAGG--CTGGAG-AATCCCT---------AG---------------------CAAACTGGAA---------A---------------AATCAAG--------------------------------------TCTTA-TT-CCTG---------TTAGAGTTGCTCTAGA-------------------TT---ATT--CTTTGTTGGCCTTACGCCGC-------------------------------------TCTTCAG--------TTAT---TA-------G-AACCCATT---------------CTCGCCC-----------C--------------------------------------G--------------------------TA-T-CCCCACTTG---GTCG---TT-GATGAAATTCTAATAATTTGGTATATACTTTCTC-TCCAA---------------------AA------C-------------AAA--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TGTTAACCAA--ATAAACATCCAACGACGTAAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTCTC-TGCC
droBia1 scf7180000302421:2002234-2002563 - GGAAGAAGGAGATCGCCGAAGTGCTCCACGACTTGCGCGAAAAAGAAAAGGTACTATTAGG--CTGGAA-GATACCC---------AT---------------------CGAACCGGCA---------AA--------------CACCAAC--------------------------------------TCCTC-TT-CCTG---------TTAGAGTTGCTCTAGA--------TCGTTTCTAGATC---GTT--CTTTGTTGGCCCTAAGCCGC-------------------------------------TCTTCAG--------TTGTTTTT-----CTATCATTCCATT---------------C------------------------------------------------------------------------------------T-C-ACCCACTTG---GTCT---TT-AATGAAATTCTAATAATTTGGTGTATACTTTCTC-TCCAA---------------------AAA-----C-------------AAA--------AC--------------------GAA-----------------------------------------AATTAAC-C----------------------------TGTAATCGAA--A----------------AAAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTCTC-TGCC
droTak1 scf7180000415141:147695-148028 - GGAAGAAGGAGATCGCCGAAGTGCTGCACGACTTGCGCGAAAAAGAAAAGGTATTTGCCGC--CTGGGG-AA--------------------------------------------------------AA-C------TA----AGCCAAC--------------------------------------TCCTA-TTCCCCG---------TTAGAGTTGCCCTAGA--------TCGTTTCTAGATC---GTT--CCTTGTTGGCCCTAAGCCGC-------------------------------------TCTTCAG--------TTCT---TCAGCTCCAT--------T---------------CTCGCCC-----------C--------------------------------------C---------------------C--ATTT-A-TCCCACTTG---GTCG---TT-GATGAAATTCTAATAATTTGGTATATACTTTCTC-TCCAA---------------------AAA-----------------ACAAA--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TGTAATCCAA-------AATCCAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTCTC-TGCC
droEle1 scf7180000491006:1584022-1584376 - GGAAAAAGGAGATCGCCGAGGTGCTCCATGACTTGCGCGAAAAAGAAAAGGTACCATCAGG--CTAAGAGAACCTCT----------G---------------------CAAACCGGCA---------A---------------AACCAAT--------------------------------------TCCTA-TT-CATG---------TTAGAGTTGCTCTAGA--------ACCTTTCTAGATC---GTT--CTTTGTTGGCCCTACGCCTA-------------------------------------TCCTGTG--------TTAT---TT--TTCCAT--------T---------------CTCGCTC-----------T--------------------------------------CTCTA-----------------T--AATT-C-GTCCATTTG---GTCG---TT-GATGAAATTCTAATAATTTGGTATATACTTTTTC-TCCAA---------------------AA------C-----------ATAAA--------AC---------------------AA-----------------------------------------AATTCCT-C----------------------------TGTAATCGAAAAAAAAACATCAAACGACGTAAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCACTC-TGCC
droRho1 scf7180000779580:12448-12784 + GGAAGAAGGAGATCGCCGAGGTGCTCCACGACTTGCGCGAAAAAGAAAAGGTATCATCAGG--CTGGGA-AACCCCT----------G---------------------CAAGCCGGCA---------A---------------AACCAAT--------------------------------------TCCTA-TT-CCTT---------TTAGAGTTGTTCTAGA--------TCGTTTCTAGATC---GTT--CTTTGTTGGCCTTACGCCGC-------------------------------------TCCTGTG--------TTTT---TT---TCCAT--------T---------------CTCGCTC-----------C--------------------------------------A---------------------C--ATTT-T-CCCCACTTG---GTCG---TT-GATGAAATTCTAATAATTTGGTATATACTTTTTC-TCCAA---------------------AAA-----A-------------AAA--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TGTAATCCAA--T-AAACATCAAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT-----------------CC
droFic1 scf7180000454077:1923255-1923617 + GGAAGAAGGAGATCGCCCAGGTGCTGCACGATTTGCGCGAAAAAGAAAAGGTACCATCTGA--GTGGAT---TGACCAC------------------------------CGAATCGGCAAAGTGGCCGAAAGAAAAACGAAT--TCCAAAC--------------------------------------TCCTA-TT-CCTG---------TTACAGTTGCTCTAGAT------ATTGTTTCTAGATCTAGATT--CTTTGTTGGCCTTACGCCGC-------------------------------------TCTTTAG--------TTCT---AC--CTCCATT-------T---------------TTAGCTC-----------C------------------------------------------------------------C--ATTTAT-CCCCCGTTC---GTCG---TTCGATGAAATTCTAATAATTTGGTATATACTTTCTC-TCCAA---------------------AAA-----------------ACAAA--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TGTTAACCAA---------------AACGTAAAGCGTTTCCAAACAATCGAAGAGGTAAGCGCGTC-----------------------------CG-------ACAGGTT--------TCTCTC-TGCC
droKik1 scf7180000302698:1007134-1007482 - GGAAAAAGGAGATCGCCGAGGTGCTGCATGATTTGCGCGAAAAAGAAAAGGTGAGCATCGC--T---------------------------------------------------------------------------------------------------------------------------------------------------TTCGACTCTTCCTAGATCGATTTCTCGTTTCTAGATC---GTTTTCTTGGTTGGCCCTAGGCCGC-------------------------------------TCTTGAG--------TTTT---T-----CTTT--------G----TCCATTACTCTCTCTCTC-----------T--------------------------------------G-------TCTCT---------G--TTTT-CCCCCCCGTCG---TTTG---TT-GATGAAATTCTAATAATTTGGTTTATACTTTTTC-TCCAA---------------------AAA-----A---AAAAACAACCAAA-ATAAAACCA---------------------AA-----------------------------------------AATTACTTT----------------------------TGTA---AA-----ATATATCAAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTCTAAATCTCGCTCTC-TGCC
droAna3 scaffold_13417:406210-406438 - GGAAAAAGGAGATCGCCGAGGTGCTGCACGATCTGCGCGAAAAAGAAAAGGTATCCCACGG--TTGCCA-AACT-----------------------------ACTTCC------AAGT---------A---------------GA--------------------TCTCCA-G--------------------------TC---------TCTGAGTTTCTCTAGA----------ATCTATAGATC------------GTTGGCCTTAAGCCCTTT------------------------------------TCTGAGAAAGAATACCATTTCC--ATT---CCATTTCATCCTTCTCCTT---------GATC--CTTCTACTCT--------------------------------------G----GTATCTCT---------ACTCTCT-C-TCTCTCTCG---GTCG---TT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396573:71328-71641 + GGAAGAAGGAGATCGCCGAGGTGCTGCACGATCTGCGCGAAAAAGAAAAGGTATCCC-CGT--CCAAGA-----------------------------------------------------------A---------------G---AAC-----------------TCCATGTC-----T--CT-----GTA-TT-CCGGATGTCGGGTTTAGAGTTCCTCTAGA--------A----TCTAGATC------------GTTGGCCTTAAGCCGTTCTCTCTTCAATGAAAAC-----------------------------------------C--ATT---CCATTTCATCCTTCTCC-------TCCCGGTC-----------C-----------------------------------------------------------------TT-C-TCTCTTACG---GTCGTTGATAAAAAAAATTCTAATAATTTCGTTTATACTTTCTTCTCCAA---------------------AAA------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACGAAAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTC--------TC-C--TTGAT
dp5 XL_group1e:4000922-4001248 - GGAAGAAGGAGATAGCCGAGGTCCTGCACGATTTGCGCGAAAAAGAAAAGGTATTT---G---------------CCAACGAGCCAGG-------------CAACCTTT------GGAA---------A---------------CA--------------------T------------------------CTC-TACCCCG---------TTCCAC---C-------------------TCCAGATC---TTT--TTTTGT---GCTCAAT----------------------------CTCTCTCTCTCTCTCTTGAG--------TTAT---CT----TCAT--------C----------ACCCTCCCGCCC-----------T--------------------------------------A---------------------CCTCTTA-T-ACTCATTTTATTATCT---CT-GATGGCATTCTAATCATTTGGTTTATACTTTTTC-TTCTA---------------------AA------CAA-AAACATAAACCAA--------AC---------------------GA-----------------------------------------AATTATC-CCTCAA--------------------------------------------AAACTATGTAAAGCGTTTCCAAACCATCGAAGAGGTAAGA----------------------------------------------GGTTGC------ACTC--TTTCT
droPer2 scaffold_17:935881-936211 - GGAAGAAGGAGATAGCCGAGGTCCTGCACGATTTGCGCGAAAAAGAAAAGGTATTT---G---------------CCAACGAGCCAGG-------------CAACCTTT------GGAA---------A---------------CA--------------------T------------------------CTC-TACCCCG---------TTCCAC---C-------------------TCCAGATC---TTT--TTCTGTGCTCTCTCAAT---------------------------CTCTCTCTCTCTCTCTTGAG--------TTCT---CT----TCAT--------C----------ACCCTCCCGCCC-----------T--------------------------------------A---------------------CCTCTTA-T-ACTCATTTTATTATCT---CT-GATGGCATTCTAATCATTTGGTTTATACTTTTTC-TTCTA---------------------AA------CAA-AAACATAAACCAA--------AC---------------------GA-----------------------------------------AATTATC-CCTCAA--------------------------------------------AAACTATGTAAAGCGTTTCCAAACCATCGAAGAGGTAAGA----------------------------------------------GGTTGC------ACTC--TTTCT
droWil2 scf2_1100000004909:6863934-6864374 + GGAAGCAGGAGATTGCCGAAGTTCTGCACGATTTGCGCGAAAAAGAAAAGGTAAAGCCAAA---TGGAA-CA---------------------------------------------------------ACAACAACAAAAGTCTATAAACTTATTGTTAATTAAATGTCCT-GAACAACTTTAGTCTATCCTC-TC-TCTG---------TGTGTGT--C--------------------------------------TGTGGGCCATT--------------------------------------------TTTCAA-------------------GGATAT--------G---------------CGCGTTT-----------CATAAACAACTTGAGGCGATCTCTTTGAATTTTGGCTAACTGAC-----------------T--AATT-C-TTTCACTTT---GTC----------AAAATTCTAATCATTTCGTTTATTTC--CTC-TCAATACTTTATATCTTTATCTGTATACA-----C---ACACACACACACA--TATAT-ACATATTTATATATATGTATATGAA-----------------------------------------TATATAT-T-T-------GTTTATATATATGTACATATGT------A--T-ATAACTTAAACATCGTAAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCATT-----------------------------AAAAGAAAGACAAGT--------------------
droVir3 scaffold_12970:8386110-8386471 - dvi_13612 GGAAAAAAGAGATCGCCGAGGTGCTGCACGATCTGCGCGAAAAAGAGAAGGTATCCGTTCA-------C-AATGCAA---------TCCCAATTTTAAATATTGCCTAT------GCAA---------AA-A--T----------GTC---------------------------------G------------------------------------------------------------TCGTCT---ATT--CTCTGTTAGCGCCT--------------CAATAGGAAACTTTCGCTCTCTCCCTTTATCTTTAG--------TTTT---GT------------------------------------------------------------------------------------------------ATCTCTACATTTAAA--------T-ATCTATTTA---GCTC-----------------------------------------T-CAC---------------------AAA-----A-------------AAA--------AC---------------------AAAATTGTCTAATCATTTGATTTA-CCGCTTCTTTTCTATCA-ACTTTTC-CGTCAATATT-------------------TGTTACCC-------AACTTCAAACCATGTTAAGCGTTTTCAAACCATCGAAGAGGTAAGCGCGCCATGTTCCAAAAAAGGG-------------AA-------AAACATT--------TTTA--TCGCT
droMoj3 scaffold_6482:886562-886900 + GGAAGAAGGAGATCGCCGAAGTGCTGCACGATCTGCGCGAAAAAGAAAAGGTATCCAGTGA--ATACTC-AATATGC---------AG---------------------CGA----------------------T----------ATC---------------------------------GTTGT-----ATA-TTCTCTA---------TTTGGGGTCCCGTATA--------------------------------------------------------------GGATTCT----TTCTCTCTATCTATCTTTAG--------TTCT---GT------------------------------------------------------------------------------------------------ATCTCGACAT--AAAC--ATTT-A-TCTTTCTTA-AGCTCT---CA-AACGAAATTGT------------------------------------------------------------------------------------------------------------------CTAATCATTTGATTTAACCGCCTTTTTTCTATCAAATTTTTC-CGTCAATATT-------------------TGTTACCC-------AACTCCAAACCATGTTAAGCGTTTCCAAACTATCGAAGAGGTAAGCGCGCCTTGTTCCAAAAAAGGG-------------CA-------AAACATT--------TTTG--CTGCT
droGri2 scaffold_14853:8225328-8225452 + AAAACAAAAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------AA------------------ACCAAA-------AA---------------------A----------------------------------------------------------------------------------------------------AAATCATGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGCCGTGTTCCAAAAAAGGGAAGGAAATACAAAAAAAAAAAAAAAAAACAT------TTTC--TTACT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGCGAAAGGAGATCGCCGGAGTGCTACACGATTTGCGCGAAAAAGAAAAGGTACCAACTGT--CTGGAA-AACGCCA---------GG---------------------CAAACTGAGA---------A---------------TATAAAC--------------------------------------TCCCC-CA-CCTG---------TTAGAGTTGCTCTAGATCTAG--ATCGTTTCTAGACC---GTT--CCTTGTTGGCCTTACGCCGCGC-----------------------------------CCTTCAG--------TTCT---T-----CCAT--------A---------------GTCGTTC-----------C--------------------------------------C---------------------CCTTTTT-C-ACCCACTTG---GTCGTTGTT-GATGAAATTCTAATAATTTGGTATATACTCTCTC-TCCAA---------------------AAA-----CAAA--------ACGAT--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TGTTTA-CAA--TAAAACATCCAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTC--TTGCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....AAAGGAGATCGCCGGAGTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGGTATATACTCTCTC-T...................................................................................................................................................................................................................................................................................................2111.00101000000000000000
droSec2
GGCGAAAGGAGATCGCCGGAGTGCTACACGATTTGCGCGAAAAAGAAAAGGTACCAACTGT--CTGGAA-AACGCCA---------GG---------------------CAAAGTGAGA---------A---------------TATAAAC--------------------------------------TCCCC-TA-CCTG---------TAAGAGTTGCTCTAGA--------TCGTTTCTAGACC---GTT--CCTTGTTGGCCTTACGCCGCGT-----------------------------------CCTTCAG--------TTCT---T-----CCAT--------A---------------GTCGTTC-----------C--------------------------------------C---------------------CCTTTTT-C-ACCCACTTG---GTCGTTGTT-GATGAAATTCTAATAATTTGGTATATACTCTCTC-TCCAA---------------------AAA-----CAAA--------ACAAT--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TGTTATACAA--TAAAACATCCAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTC--TTGCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..CGAAAGGAGATCGCCGGAGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
................................TTGCGCGAAAAAGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAAACCATCGAAGAG...........................................................................1811.0010001
dm3
GGCGAAAGGAGATCGCTGGAGTGCTACACGATTTGCGCGAAAAAGAAAAGGTACCAACTGT--CTGGAA-AACGCCA---------GG---------------------CAAACTGAAA---------A---------------TATAAAC--------------------------------------TCCCCCTA-CCTG---------TTTGAGTTGCTCTAGA--------TCGTTTCTAGACC---GTT--CCTTGTTGGCCTTACGCCGCGC-----------------------------------CCTTCAG--------TTCT---T-----CCAT--------A---------------GTCGTTC-----------C------------------------------------------------------------CCTCTTT-C-TCCCACTTG---GTCGTTGTT-GATGAAATTCTAATAATTTGGTATATACTCTCTC-TCCAA---------------------AA------CAAA--------ACAAT--------AC---------------------AA-----------------------------------------AATTCCC-T----------------------------TGTTTTACAA--TAAAACATCCAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTC--TTGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....AAAGGAGATCGCTGGAGTGCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000
................................TTGCGCGAAAAAGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.....AAGGAGATCGCTGGAGTGCTAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TACACGATTTGCGCGAAAAAGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...GAAAGGAGATCGCTGGAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GGCGAAAGGAGATCGCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ACGATTTGCGCGAAAAAGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.........................................................................................................................................................................................................G---------TTTGAGTTGCTCTAGA--------TCGTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
GGCGAAAGGAGATCGCTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................TTTGCGCGAAAAAGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCGAAAGGAGATCGCTGGAGTGCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-C-TCCCACTTG---GTCGTTGTT-G......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AGGAGATCGCTGGAGTGCTACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...GAAAGGAGATCGCTGGAGTGCTACAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTACACGATTTGCGCGAAAAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..CGAAAGGAGATCGCTGGAGTGCTAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTACACGATTTGCGCGAAAAAGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
........................TACACGATTTGCGCGAAAAAGAAAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...............CTGGAGTGCTACACGATTTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................AGTGCTACACGATTTGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....AAAGGAGATCGCTGGAGTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TC-----------C------------------------------------------------------------CCTCTTT-C-TCCCACA......................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TTCAG--------TTCT---T-----CCAT--------A---------------GTAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
droEre2
GGAGAAAGGAGATCGCGGGTGTGCTACATGACTTGCGCGAAAAAGAAAAGGTACCATCTGG--CTGGAA-AACGCCA---------GG---------------------CAACCCGACC---------A---------------TATAAAC--------------------------------------TCCTA-AA-CCTA---------TTAGAGTTGCTCTAGA--------TCGTTTCTAGACC---GTT--CCTTGTTGGCCTTACGCCGCGC-----------------------------------TCTTGAG--------TTCT---T-----CCAT--------A---------------GT---TC-----------C--------------------------------------C----------CT---------C--ATTT-C-TCCCACTTG---GTCG---TT-GATGAAATTCTAATAATTTGGTATATACTTTCTC-TCCAA---------------------AA------CAAA--------ACAAT--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TATTATCCAA--TAAAACATCCAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTC--TTGCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
GGCGAAAGGAGATCGCGGGCGTGCTGCACGATTTGCGCGAAAAAGAAAAGGTACCATCTGACACTGGAG-AACGCCA---------GG---------------------CAAATCGGCA---------A-----------TT--TACAAAC---------------------------------CTATATCCTA-TA-CCTA---------TTAGAGTTGCTCTAGA--------TCGTTTCTAGACC---GTT--TCTTGTTGGCCTTACGCCGCGC-----------------------------------TCTTGAG--------TTCT---T-----TCAT--------A---------------GTCGCCCCA---------G--------------------------------------C---------------------CCCTTTT-C-TGCCACTTG---GTCG---TT-GATGAAATTCTAATAATTTGGTATATACTTTCTC-TCCAA---------------------AAACAAAACAAA--------ACCAT--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TGTTAACCAA--TAAAACATCCAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTC--TTGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............CGCGGGCGTGCTGCACGATTTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
droEug1
GGAAGAAGGAGATTGCTCAAGTGCTCCATGATTTGCGCGAAAAAGAAAAGGTAACAACAGG--CTGGAG-AATCCCT---------AG---------------------CAAACTGGAA---------A---------------AATCAAG--------------------------------------TCTTA-TT-CCTG---------TTAGAGTTGCTCTAGA-------------------TT---ATT--CTTTGTTGGCCTTACGCCGC-------------------------------------TCTTCAG--------TTAT---TA-------G-AACCCATT---------------CTCGCCC-----------C--------------------------------------G--------------------------TA-T-CCCCACTTG---GTCG---TT-GATGAAATTCTAATAATTTGGTATATACTTTCTC-TCCAA---------------------AA------C-------------AAA--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TGTTAACCAA--ATAAACATCCAACGACGTAAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTCTC-TGCCSizeHit CountTotal NormTotal
No Reads
droBia1
GGAAGAAGGAGATCGCCGAAGTGCTCCACGACTTGCGCGAAAAAGAAAAGGTACTATTAGG--CTGGAA-GATACCC---------AT---------------------CGAACCGGCA---------AA--------------CACCAAC--------------------------------------TCCTC-TT-CCTG---------TTAGAGTTGCTCTAGA--------TCGTTTCTAGATC---GTT--CTTTGTTGGCCCTAAGCCGC-------------------------------------TCTTCAG--------TTGTTTTT-----CTATCATTCCATT---------------C------------------------------------------------------------------------------------T-C-ACCCACTTG---GTCT---TT-AATGAAATTCTAATAATTTGGTGTATACTTTCTC-TCCAA---------------------AAA-----C-------------AAA--------AC--------------------GAA-----------------------------------------AATTAAC-C----------------------------TGTAATCGAA--A----------------AAAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTCTC-TGCCSizeHit CountTotal NormTotal
No Reads
droTak1
GGAAGAAGGAGATCGCCGAAGTGCTGCACGACTTGCGCGAAAAAGAAAAGGTATTTGCCGC--CTGGGG-AA--------------------------------------------------------AA-C------TA----AGCCAAC--------------------------------------TCCTA-TTCCCCG---------TTAGAGTTGCCCTAGA--------TCGTTTCTAGATC---GTT--CCTTGTTGGCCCTAAGCCGC-------------------------------------TCTTCAG--------TTCT---TCAGCTCCAT--------T---------------CTCGCCC-----------C--------------------------------------C---------------------C--ATTT-A-TCCCACTTG---GTCG---TT-GATGAAATTCTAATAATTTGGTATATACTTTCTC-TCCAA---------------------AAA-----------------ACAAA--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TGTAATCCAA-------AATCCAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCTCTC-TGCCSizeHit CountTotal NormTotal
No Reads
droEle1
GGAAAAAGGAGATCGCCGAGGTGCTCCATGACTTGCGCGAAAAAGAAAAGGTACCATCAGG--CTAAGAGAACCTCT----------G---------------------CAAACCGGCA---------A---------------AACCAAT--------------------------------------TCCTA-TT-CATG---------TTAGAGTTGCTCTAGA--------ACCTTTCTAGATC---GTT--CTTTGTTGGCCCTACGCCTA-------------------------------------TCCTGTG--------TTAT---TT--TTCCAT--------T---------------CTCGCTC-----------T--------------------------------------CTCTA-----------------T--AATT-C-GTCCATTTG---GTCG---TT-GATGAAATTCTAATAATTTGGTATATACTTTTTC-TCCAA---------------------AA------C-----------ATAAA--------AC---------------------AA-----------------------------------------AATTCCT-C----------------------------TGTAATCGAAAAAAAAACATCAAACGACGTAAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT--------TCACTC-TGCCSizeHit CountTotal NormTotal
No Reads
droRho1
GGAAGAAGGAGATCGCCGAGGTGCTCCACGACTTGCGCGAAAAAGAAAAGGTATCATCAGG--CTGGGA-AACCCCT----------G---------------------CAAGCCGGCA---------A---------------AACCAAT--------------------------------------TCCTA-TT-CCTT---------TTAGAGTTGTTCTAGA--------TCGTTTCTAGATC---GTT--CTTTGTTGGCCTTACGCCGC-------------------------------------TCCTGTG--------TTTT---TT---TCCAT--------T---------------CTCGCTC-----------C--------------------------------------A---------------------C--ATTT-T-CCCCACTTG---GTCG---TT-GATGAAATTCTAATAATTTGGTATATACTTTTTC-TCCAA---------------------AAA-----A-------------AAA--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TGTAATCCAA--T-AAACATCAAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTT-----------------CCSizeHit CountTotal NormTotal
No Reads
droFic1
GGAAGAAGGAGATCGCCCAGGTGCTGCACGATTTGCGCGAAAAAGAAAAGGTACCATCTGA--GTGGAT---TGACCAC------------------------------CGAATCGGCAAAGTGGCCGAAAGAAAAACGAAT--TCCAAAC--------------------------------------TCCTA-TT-CCTG---------TTACAGTTGCTCTAGAT------ATTGTTTCTAGATCTAGATT--CTTTGTTGGCCTTACGCCGC-------------------------------------TCTTTAG--------TTCT---AC--CTCCATT-------T---------------TTAGCTC-----------C------------------------------------------------------------C--ATTTAT-CCCCCGTTC---GTCG---TTCGATGAAATTCTAATAATTTGGTATATACTTTCTC-TCCAA---------------------AAA-----------------ACAAA--------AC---------------------AA-----------------------------------------AATTCCC-C----------------------------TGTTAACCAA---------------AACGTAAAGCGTTTCCAAACAATCGAAGAGGTAAGCGCGTC-----------------------------CG-------ACAGGTT--------TCTCTC-TGCCSizeHit CountTotal NormTotal
No Reads
droKik1
GGAAAAAGGAGATCGCCGAGGTGCTGCATGATTTGCGCGAAAAAGAAAAGGTGAGCATCGC--T---------------------------------------------------------------------------------------------------------------------------------------------------TTCGACTCTTCCTAGATCGATTTCTCGTTTCTAGATC---GTTTTCTTGGTTGGCCCTAGGCCGC-------------------------------------TCTTGAG--------TTTT---T-----CTTT--------G----TCCATTACTCTCTCTCTC-----------T--------------------------------------G-------TCTCT---------G--TTTT-CCCCCCCGTCG---TTTG---TT-GATGAAATTCTAATAATTTGGTTTATACTTTTTC-TCCAA---------------------AAA-----A---AAAAACAACCAAA-ATAAAACCA---------------------AA-----------------------------------------AATTACTTT----------------------------TGTA---AA-----ATATATCAAACGACGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTCTAAATCTCGCTCTC-TGCCSizeHit CountTotal NormTotal
No Reads
droAna3
GGAAAAAGGAGATCGCCGAGGTGCTGCACGATCTGCGCGAAAAAGAAAAGGTATCCCACGG--TTGCCA-AACT-----------------------------ACTTCC------AAGT---------A---------------GA--------------------TCTCCA-G--------------------------TC---------TCTGAGTTTCTCTAGA----------ATCTATAGATC------------GTTGGCCTTAAGCCCTTT------------------------------------TCTGAGAAAGAATACCATTTCC--ATT---CCATTTCATCCTTCTCCTT---------GATC--CTTCTACTCT--------------------------------------G----GTATCTCT---------ACTCTCT-C-TCTCTCTCG---GTCG---TT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................TCATCCTTCTCCTT---------GATC--CTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................TGCACGATCTGCGCGAAAAAGAAAAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
................................................................................................................................................................................................................................AGA----------ATCTATAGATC------------GTTGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.............................................AAAAGGTATCCCACGG--TTGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
............TCGCCGAGGTGCTGCACGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCT-C-TCTCTCTCG---GTCG---TT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2111.001100000
................CGAGGTGCTGCACGATCTGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCT-C-TCTCTCTCG---GTCG---TT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2211.001100000
.................GAGGTGCTGCACGATCTGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droBip1
GGAAGAAGGAGATCGCCGAGGTGCTGCACGATCTGCGCGAAAAAGAAAAGGTATCCC-CGT--CCAAGA-----------------------------------------------------------A---------------G---AAC-----------------TCCATGTC-----T--CT-----GTA-TT-CCGGATGTCGGGTTTAGAGTTCCTCTAGA--------A----TCTAGATC------------GTTGGCCTTAAGCCGTTCTCTCTTCAATGAAAAC-----------------------------------------C--ATT---CCATTTCATCCTTCTCC-------TCCCGGTC-----------C-----------------------------------------------------------------TT-C-TCTCTTACG---GTCGTTGATAAAAAAAATTCTAATAATTTCGTTTATACTTTCTTCTCCAA---------------------AAA------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACGAAAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGTC-----------------------------CA-------ACAGGTC--------TC-C--TTGATSizeHit CountTotal NormTotal
No Reads
dp5
GGAAGAAGGAGATAGCCGAGGTCCTGCACGATTTGCGCGAAAAAGAAAAGGTATTT---G---------------CCAACGAGCCAGG-------------CAACCTTT------GGAA---------A---------------CA--------------------T------------------------CTC-TACCCCG---------TTCCAC---C-------------------TCCAGATC---TTT--TTTTGT---GCTCAAT----------------------------CTCTCTCTCTCTCTCTTGAG--------TTAT---CT----TCAT--------C----------ACCCTCCCGCCC-----------T--------------------------------------A---------------------CCTCTTA-T-ACTCATTTTATTATCT---CT-GATGGCATTCTAATCATTTGGTTTATACTTTTTC-TTCTA---------------------AA------CAA-AAACATAAACCAA--------AC---------------------GA-----------------------------------------AATTATC-CCTCAA--------------------------------------------AAACTATGTAAAGCGTTTCCAAACCATCGAAGAGGTAAGA----------------------------------------------GGTTGC------ACTC--TTTCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................GGTATTT---G---------------CCAACGAGCCAGG-------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
GGAAGAAGGAGATAGCCGAGGTCCTGCACGATTTGCGCGAAAAAGAAAAGGTATTT---G---------------CCAACGAGCCAGG-------------CAACCTTT------GGAA---------A---------------CA--------------------T------------------------CTC-TACCCCG---------TTCCAC---C-------------------TCCAGATC---TTT--TTCTGTGCTCTCTCAAT---------------------------CTCTCTCTCTCTCTCTTGAG--------TTCT---CT----TCAT--------C----------ACCCTCCCGCCC-----------T--------------------------------------A---------------------CCTCTTA-T-ACTCATTTTATTATCT---CT-GATGGCATTCTAATCATTTGGTTTATACTTTTTC-TTCTA---------------------AA------CAA-AAACATAAACCAA--------AC---------------------GA-----------------------------------------AATTATC-CCTCAA--------------------------------------------AAACTATGTAAAGCGTTTCCAAACCATCGAAGAGGTAAGA----------------------------------------------GGTTGC------ACTC--TTTCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......AGGAGATAGCCGAGGTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droWil2
GGAAGCAGGAGATTGCCGAAGTTCTGCACGATTTGCGCGAAAAAGAAAAGGTAAAGCCAAA---TGGAA-CA---------------------------------------------------------ACAACAACAAAAGTCTATAAACTTATTGTTAATTAAATGTCCT-GAACAACTTTAGTCTATCCTC-TC-TCTG---------TGTGTGT--C--------------------------------------TGTGGGCCATT--------------------------------------------TTTCAA-------------------GGATAT--------G---------------CGCGTTT-----------CATAAACAACTTGAGGCGATCTCTTTGAATTTTGGCTAACTGAC-----------------T--AATT-C-TTTCACTTT---GTC----------AAAATTCTAATCATTTCGTTTATTTC--CTC-TCAATACTTTATATCTTTATCTGTATACA-----C---ACACACACACACA--TATAT-ACATATTTATATATATGTATATGAA-----------------------------------------TATATAT-T-T-------GTTTATATATATGTACATATGT------A--T-ATAACTTAAACATCGTAAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCATT-----------------------------AAAAGAAAGACAAGT--------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................AA-CA---------------------------------------------------------ACAACAACAAAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.10200020
droVir3
GGAAAAAAGAGATCGCCGAGGTGCTGCACGATCTGCGCGAAAAAGAGAAGGTATCCGTTCA-------C-AATGCAA---------TCCCAATTTTAAATATTGCCTAT------GCAA---------AA-A--T----------GTC---------------------------------G------------------------------------------------------------TCGTCT---ATT--CTCTGTTAGCGCCT--------------CAATAGGAAACTTTCGCTCTCTCCCTTTATCTTTAG--------TTTT---GT------------------------------------------------------------------------------------------------ATCTCTACATTTAAA--------T-ATCTATTTA---GCTC-----------------------------------------T-CAC---------------------AAA-----A-------------AAA--------AC---------------------AAAATTGTCTAATCATTTGATTTA-CCGCTTCTTTTCTATCA-ACTTTTC-CGTCAATATT-------------------TGTTACCC-------AACTTCAAACCATGTTAAGCGTTTTCAAACCATCGAAGAGGTAAGCGCGCCATGTTCCAAAAAAGGG-------------AA-------AAACATT--------TTTA--TCGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........GAGATCGCCGAGGTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000002
......AAGAGATCGCCGAGGTGCTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.................GAGGTGCTGCACGATCTGCGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000001000000000000000000000000000000000000000000000000000
.................................................................................................................................................GTC---------------------------------G------------------------------------------------------------TCGTCT---ATT--CTCTGTTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000001
.........................GCACGATCTGCGCGAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................AGGTGCTGCACGATCTGCGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....AAAAGAGATCGCCGAGGTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
GGAAGAAGGAGATCGCCGAAGTGCTGCACGATCTGCGCGAAAAAGAAAAGGTATCCAGTGA--ATACTC-AATATGC---------AG---------------------CGA----------------------T----------ATC---------------------------------GTTGT-----ATA-TTCTCTA---------TTTGGGGTCCCGTATA--------------------------------------------------------------GGATTCT----TTCTCTCTATCTATCTTTAG--------TTCT---GT------------------------------------------------------------------------------------------------ATCTCGACAT--AAAC--ATTT-A-TCTTTCTTA-AGCTCT---CA-AACGAAATTGT------------------------------------------------------------------------------------------------------------------CTAATCATTTGATTTAACCGCCTTTTTTCTATCAAATTTTTC-CGTCAATATT-------------------TGTTACCC-------AACTCCAAACCATGTTAAGCGTTTCCAAACTATCGAAGAGGTAAGCGCGCCTTGTTCCAAAAAAGGG-------------CA-------AAACATT--------TTTG--CTGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT------------------------------------------------------------------------------------------------------------------CTAATCATTTGATTTAACCGCCTT..................................................................................................................................................................................2611.001100000
................CGAAGTGCTGCACGATCTGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAACTATCGAAGAGGTAAG......................................................................2211.001000100
droGri2
AAAACAAAAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------AA------------------ACCAAA-------AA---------------------A----------------------------------------------------------------------------------------------------AAATCATGTTAAGCGTTTCCAAACCATCGAAGAGGTAAGCGCGCCGTGTTCCAAAAAAGGGAAGGAAATACAAAAAAAAAAAAAAAAAACAT------TTTC--TTACTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:45 AM