ID:

dsi_18483

Coordinate:

3l:466219-466368 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTGAAACAAACAATTTGTTAATACGGCTAAGAGTATATAACTCCAAACCCAATCCGATCGAAAAACCTTTCTCTGCTTCATCGATCCGAAACACGCCCAATTCCACAAGAGAATAACACACGAGGTAGAGATGGACAGGAGGGGTCTCTCAAGTTCAATTGAGTTTCACTTTCCTTCATGATTTAAATTAACAATTATAGCGGATAATTAACAAAATGAAAACAAAAGCATCGAAGGCAACTCCCCCTGA
**************************************************.....(((((.....((..((((((((((.(((...)))..........((((.......)))).......)))))))))).))..(((((((....(((((......))))).....)))))))...))))).................**************************************************
Read size # Mismatch Hit Count Total Norm Total M025
embryo
SRR553487
NRT_0-2 hours eggs
................................GTATATAACTCCAAACCCAATCCGATC............................................................................................................................................................................................... 27 0 1 1.00 1 1 0
............................................................................................................................GTAGAGATGAACAGAAAGG........................................................................................................... 19 3 20 0.05 1 0 1

Anti-sense strand reads

AACTTTGTTTGTTAAACAATTATGCCGATTCTCATATATTGAGGTTTGGGTTAGGCTAGCTTTTTGGAAAGAGACGAAGTAGCTAGGCTTTGTGCGGGTTAAGGTGTTCTCTTATTGTGTGCTCCATCTCTACCTGTCCTCCCCAGAGAGTTCAAGTTAACTCAAAGTGAAAGGAAGTACTAAATTTAATTGTTAATATCGCCTATTAATTGTTTTACTTTTGTTTTCGTAGCTTCCGTTGAGGGGGACT
**************************************************.....(((((.....((..((((((((((.(((...)))..........((((.......)))).......)))))))))).))..(((((((....(((((......))))).....)))))))...))))).................**************************************************
Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
SRR553485
Chicharo_3 day-old ovaries
SRR553487
NRT_0-2 hours eggs
SRR553488
RT_0-2 hours eggs
O001
Testis
SRR902009
testis
GSM343915
embryo
M024
male body
SRR618934
dsim w501 ovaries
SRR902008
ovaries
.........................................................................AAGAAGTAGCTAGGC.................................................................................................................................................................. 15 1 13 5.46 71 70 1 0 0 0 0 0 0 0 0
...........................................................................................GTGCGGGTTAAGGTGTT.............................................................................................................................................. 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AAGGAAGTACAAAATGTAATTAT......................................................... 23 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.....................ATGCCGGTTCGCATATAT................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
...........................................................................GAAGTAGCTAGGCATT............................................................................................................................................................... 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TTTGTGCGGTTTAAGGTG................................................................................................................................................ 18 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0
..............................................................................GTAGCTAGTCATTGTGAGGG........................................................................................................................................................ 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................CTACCTGTCCGCCTCAGA....................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................TACCTCAAGGTGACAGGAAG......................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................TCAAGTTAACTCACAG................................................................................... 16 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0
..................................................................................CAAAGCTTTGTGCAGGTTA..................................................................................................................................................... 19 3 20 0.15 3 0 0 0 3 0 0 0 0 0 0
...............................................................................................................................................CAGAGGGTTCAAGTTCAC......................................................................................... 18 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTTGGTTTTCCTAGCTTCC............. 19 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AGGGTTCAAGTTCACTAAAAG................................................................................... 21 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................AAGTACTAATTTTAATT........................................................... 17 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0
..................................................................................CTAAGCTTCGTGCAGGTTA..................................................................................................................................................... 19 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0
..................................................TTAGGCTAGTTGTTCGGAAA.................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 1
.....................................................................ATGGAAGAAGTAGCTAGGC.................................................................................................................................................................. 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0
.......TTTGTTAAACAATGATAC................................................................................................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................GTGCGGGTCAAGGTG................................................................................................................................................ 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...............................................................TTGGAAAGAGTTGAAGT.......................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................AGGGAAAGCAAGTTCTAAAT................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:466169-466418 - dsi_18483 TTGAAACAAACAATTTG----------TT--AATACGGCTA-------------AGAGTATA-----------------TAACTCCAAACC--------C------------------------------------------------------------AATCCGATCG------------------------AAAAACCTTTCTC-TGCTTCAT------------CGATCCGA--AACACGCCC--A-ATTCCACAAGAGAATAACACACGAGGTAGA--GATGGACAG----------------------------------------G------------------------------------------------------------------------AGGGGTCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTCC------------------------------------------------------------------------TTCATGATTTAAATTAACAATTATAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA----------------------TCGA--AGGCAACTCCCCCT------------------------GA
droSec2 scaffold_2:524219-524390 - TTGAAACAAACAATTTG----------TT--AATACGGCTT-------------AAGGTATATTTGGCTGGGGCGGATCTAACTCCAAATT--------C------------------------------------------------------------AATCCGATCG------------------------AAAAACCTTTCTC-TACTTAAT------------CGATCCGA--AACACGCCC--A-ATTCCACAAGAGAATAACACACGAGGTAGA--GATGGACAG----------------------------------------G------------------------------------------------------------------------AGGGGTCTCTCAAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3L:502605-502880 - TTGAAACAAACAATTTG----------TT--AATACGGCTA-------------AAA---CGGCTGACTGGGGCGAATCTAACTCCAAATC--------C------------------------------------------------------------AATACGATCG------------------------AAAAACATTTCTC-TGCTTCAT------------CGATCGGA--AACACGCCC--A-AATCCACAAGAGAATAACACACGAGATAGA--GATGGACTGAAG--------------------------------------GGGGGGGGGG--------------------------------------------------------------GGGGGTCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTCC------------------------------------------------------------------------TTCATAATTTAAATTAACAATTATAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA----------------------TCGA--AGGCAACTCCCCCT------------------------GA
droEre2 scaffold_4784:500500-500764 - TCGAAGCTGAAAGCCTG----------GTCAACTGTGGCTC-------------AAAGTATTTGT-----------ATCTCGCTCAAAGCC--------C------------------------------------------------------------AATCCGATCG------------------------GAAAACCTTTCTT-TCCTTCTT------------CGAGCCGA--AACACGCTC--A-ATTCCACAAGAGAATAACACACGAGACAGA--GATGAAC-------------------------------------------------------------------------------------------------------------------TGGGGTCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTTC------------------------------------------------------------------------TTCGTGATTTAAATTAACAATTACAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA---GGC--------ACACCACATCGA--AGGCAACTCCC-CT------------------------GA
droYak3 3L:481285-481493 - TTGAAACTGAAAGCCTA----------CGCAACTACGG------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCTT-TCCTTCAT------------CGATCCGG--AACACGCCC--A-ATTCCA-----------CACACGAGATGGA--GATGAAC-------------------------------------------------------------------------------------------------------------------TGGGGTCTCTCGAGTTCAA-TTGAG---------------------TTTCACTTTCC------------------------------------------------------------------------TTCGTGATTTAAATTAACAATTATAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA---GGC--------ACACCACATCGC--AGGCAACTCCCCCT------------------------GA
droEug1 scf7180000409184:522141-522414 - CAAGAGCAAACG------------------------------------------------------------------------CCAAAGC--------C--------------------------------AGACCAATCTCCGCTTATCGCTAAC---AATCGGATCA------------------------GAAAACCTTTCTC-TCCTCCAT------------CGATCGGG--AACACGCCC--A-ATTTCATAAGAGAATAACACACGGGAAAGA--GATGGAC-------------------------------------------------------------------------------------------------------------------GAGGGTCTCTCAAGTTCAA-ATGGGCTTTCAGTTTTCAATATTGAGTTTCACTTTCT------------------------------------------------------------------------TTCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAACGAAAACAAAA-------------GCA---GCC--------TCGCCGAATCGA--CGGCAACTCCCCCC------------------------GA
droBia1 scf7180000300910:569618-569908 - ATGTAATTGA--ATTTG-----------------------------------------------------------ATTTACCCCCAAAGTGTATCTCCCACTCTTCTTTCAAAAGT---------------ACTACAAGCTCCTCTTATCGCCAGC---AATCGGATCA------------------------GAAAACCTTTCAC-TCCTTCAT------------CGATCCGA--AACACGCCC--A-ATTTCATAAGAAAAAAACACATGAGAAAAATGGATGCAC-------------------------------------------------------------------------------------------------------------------GGGGGTCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTTC------------------------------------------------------------------------TTCGAGATTTAAATTAACAATTAAAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA---GGC--------ACACCAAATCGA--AGGCAACACCCCCC------------------------GA
droTak1 scf7180000415846:208954-209168 + ---------------------------------------------------------------------------------------------------C------------------------------------------------------------AATCGGATCA------------------------GAAAACCTTTCTC-TCCTTCAT------------CGATCCGC--AACACGCCC--A-ATTTCATAAGAAAATAACACACGAGCAAGATAGATGGAC-------------------------------------------------------------------------------------------------------------------GGGGGTCTCTAAAGTTCAA-TTGAG---------------------TTTCACTTTTC------------------------------------------------------------------------TTCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA---GGC--------ACACCAAATCGA--AGGCAACACCCCCCAACG--------------------GA
droEle1 scf7180000491249:611420-611632 - ---------------------------------------------------------------------------------------------------C------------------------------------------------------------AATCGGATCA------------------------GAAAACCTTTCTC-TACTTCTC------------AGATCCGA--AACACGCCC--A-ATTTCATAAGAGAATAACACACGAGAAAGA--GATGGCG-------------------------------------------------------------------------------------------------------------------GAGGGTCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTTATTT--------------------------------------------------------------------TTTCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAATGAAAACAAAA-------------ACA---GGC--------ACACCAAATCGA--AGCCAACTCCTCCC------------------------GA
droRho1 scf7180000779644:11185-11401 - ---------------------------------------------------------------------------------------------------C------------------------------------------------------------AATCGGATCA------------------------GAAAACCTTTCTC-TCCTCCTT------------CAAACCGA--AACACGCCC--A-ATTTCATAAGAGAATAACACACGGGAAAGA--GATGGAA-------------------------------------------------------------------------------------------------------------------GAGGGTCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTTC------------------------------------------------------------------------TTCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA---AACCAACACCAACACCAAATCGA--AGGCAACTCCCCCC------------------------GA
droFic1 scf7180000454105:616777-617098 - TAGGTGGAAACAACTTCAATCCTATACTT--AATCCGGATTTAGAGACCTCAAAAAA---TGGTTGATTAAC-------AACCGTTCAAGTGCATCACCCACACCAC----AAAAGTCAACAATCCCAAGTCAATCCAATCTCCACTTATCGCTTAC---AATCGGATCA------------------------GTAGACCTTTCTC-TCCT-CTT------------CGATCCGA--AACACGCCC--A-ATTTCATAAGAGA-----------------------------------------------------------------------------------------------------------------------------------------------GGGTCTCTCAAGTTCAA-TCGAG---------------------TTTCACTTTTC------------------------------------------------------------------------CCCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA---GCC--------CCACCAAACCGA--AGGCAACTCCTCTC------------------------GC
droKik1 scf7180000297989:77972-78175 - ---------------------------------------------------------------------------------------------------C------------------------------------------------------------AATCGGATCA------------------------CAAGACCTTTCTC-TACTTCTCTGC---------AGGCCCGAAAAACACGCCC--A-TTTTCATAAGGGAATAACACACGAGGGGGA--GAGAG---------------------------------------------------------------------------------------------------------------------TGAGAGATCTCAAGTTCAA-TTGAG---------------------TTTCACTTTCCTTC------------------GCC-------------------------------------ACGAAAAAATGTTCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAACGAAAACAAAA-------------GCA---GC----------------------------------CCT------------------------G-
dp5 XR_group3a:910851-911160 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCTTTCTCCTACTCTTT------------CGAT-CGA--ATCACGCCCCGA-AAACCATAAGAGAATTG------------------------AAGAGAAAACCAAGAGGCCCAGAGGGAGGCAGGGTGGCAGGGGGGGGGGGGGGGCTTGGGCAGGGGCCACTCT---------------------------------------------CCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTTTTTTT-TGTT---------------------TTCCTTCTGTTGTTCACTCTTCTCTCCGATGATTATAAAATGTTCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAATGAAAACAAAG-------------GCA----------------------ACGAAAAGGCAACACCCCCTAAAAAACAGAAAACCGAAAGCCAAAA
droPer2 scaffold_23:941002-941300 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCTTTCTCCTACTCTTT------------CGAT-CGA--ATCACGCCCCGA-AAACCATAAGAGAATTG------------------------AAGAGAAAACCAAGAGGCCCAGAGGGAGGCAGGGTGGCAGGGG-----GGGGGGCTTGGGCAGGGGCCACTCT---------------------------------------------CCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTTTTTTT-T---------------------------CTTCTGTTGTTCACTCTTCTCTCCGATGATTATAAAATGTTCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAATGAAAACAAAG-------------GCA----------------------ACGAACAGGCAACACCCCCTAAAAAACAGAAAACCGAAAGCCAAAA
droWil2 scf2_1100000004540:313475-313796 + CAAC---AAAA--------------------------------------------------------------------------------------------------------------------------------ATTCCACTAATCGCCAATTGAGATCGAGCCAAAATGAAACCAAACCAAAGCAAAGCAAAGCCTTTCTC---CTCCAA---ACTTGACATTG-TTCGA--CACACGCCC--A-AAAAAA------A----------------------------------------------------------------------------AAAAAACTTGAGAAAAAAACAATTTCATAAGTAAGAAAATATGAAAAATAACACAAGAAAAAAAAAGAGGTCT-TCAAGTTCAA-TTGCG---------------------TTTCACTTTTTTTTT-T-CTTTTTGCTTCATTATTATTATTTTTTTTTTGTTCCTCACCCCCCTTCC---------------ATTCGTGATTTAAATTAACAATTAAAGCAGATAATTAACAAAATGGAAACACAA------------------------------------------------------------------------------------
droVir3 scaffold_13049:3302036-3302209 - G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGGGCTTACAATTTCGA-TAGAG---------------------TTTCACTTTTCGCCATTGTTAATCGCCTAGTTGTT-------------------------------------ATTACAATTTTTTCATGATTTAAATTAACAATTAAGCTCGATAATTAACAAAATGAAAACATGGTAAGATAAAAAAAAAAAAAAAACAAAA---ACA-----AC-A--TGGCAACACCCCTCT-----------------------AA
droMoj3 scaffold_6654:682724-682916 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AACACGCCC--ACAACTCATAAGAGCATTTC-----------------------AAGATCAGGAGACGGGCCGGCGATGTGGACAGATTATCAAGAGGAGGGGGT--------------------------------------------------------------GGAGTTGGCACGAGCTGAAGTCGAG---------------------TTTCACTTTTCGCTATTGTTAA------------------TCTCAT----------------------------TTCGGCCGTTTCGTGATTTAAATTAACAATTAAAGTCGATAATTAACAAAATGAAAACA---------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTGAAACAAACAATTTG----------TT--AATACGGCTA-------------AGAGTATA-----------------TAACTCCAAACC--------C------------------------------------------------------------AATCCGATCG------------------------AAAAACCTTTCTC-TGCTTCAT------------CGATCCGA--AACACGCCC--A-ATTCCACAAGAGAATAACACACGAGGTAGA--GATGGACAG----------------------------------------G------------------------------------------------------------------------AGGGGTCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTCC------------------------------------------------------------------------TTCATGATTTAAATTAACAATTATAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA----------------------TCGA--AGGCAACTCCCCCT------------------------GASizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
.........................................................GTATA-----------------TAACTCCAAACC--------C------------------------------------------------------------AATCCGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
droSec2
TTGAAACAAACAATTTG----------TT--AATACGGCTT-------------AAGGTATATTTGGCTGGGGCGGATCTAACTCCAAATT--------C------------------------------------------------------------AATCCGATCG------------------------AAAAACCTTTCTC-TACTTAAT------------CGATCCGA--AACACGCCC--A-ATTCCACAAGAGAATAACACACGAGGTAGA--GATGGACAG----------------------------------------G------------------------------------------------------------------------AGGGGTCTCTCAAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
No Reads
dm3
TTGAAACAAACAATTTG----------TT--AATACGGCTA-------------AAA---CGGCTGACTGGGGCGAATCTAACTCCAAATC--------C------------------------------------------------------------AATACGATCG------------------------AAAAACATTTCTC-TGCTTCAT------------CGATCGGA--AACACGCCC--A-AATCCACAAGAGAATAACACACGAGATAGA--GATGGACTGAAG--------------------------------------GGGGGGGGGG--------------------------------------------------------------GGGGGTCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTCC------------------------------------------------------------------------TTCATAATTTAAATTAACAATTATAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA----------------------TCGA--AGGCAACTCCCCCT------------------------GASizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
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..................................................................................................................................................................................................................................................CGCCC--A-AATCCACAAGAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................201164.0016400000000000001000000000000500000000000000000000000000000000000000000000000000000000000070000000000000000411170000000100000000000000000000000000000000000000000000026150310700000000000000015280220000000000000000000000000402000000000000000000000010000000000000000000000000000000000000002000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAAA-------------GCA----------------------TCGA--AGGC....................................201163.00163000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000091101296000000000000000630211300000000000000000000000002144000000000000000000000000000000000000000010000000000000000000001000000000000000000000031000000000000000000000000000
...........................................................................................................................................................................................................................................A--AACACGCCC--A-AATCCACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................211160.00160000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000352343100000030000000000000000000000000000000000000000000005900100000000000000000001200000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000240000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATTAACAATTATAGCGG............................................................................................................211160.0016000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000002200321100000000000000014100400000000000000000000000001620150000000000000000000000000000000000010000200000000000000000000080000000000000000000000171100000000000000000000000000
.......................................................................................................................................................................................................................................................................................GA--GATGGACTGAAG--------------------------------------GGGGG.............................................................................................................................................................................................................................................................................................................................................191159.001590000000000000000000000000020000000000000000000000000000000000000000000000000000000000001000000000000000051800000000000000000000000000000000000000000000000000000180041000000000000000041200310000000000000000000000000786000000000000000000000030000000000002000050000000000000000000005000000000000000000000090000000000000000000000000000
..................................................................................................................................................................TACGATCG------------------------AAAAACATTTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201158.0015800000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004160780000000000000000483181320000000000000000000000000584000000000000000000000000000000000000000000000000000000000000002000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------GCA----------------------TCGA--AGGCAACTCCCC............................211158.001580000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000023200000000000000000000000000000000000000000000000000000158522400000000000000029219160000000000000000000000000181080000000000000000000000100000000000011000030000000000000000000003000000000000000000000012000000000000000000000000000
...................................................................................................C------------------------------------------------------------AATACGATCG------------------------AAAAACATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211157.00157000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000007000000000200000000000000000000000000000000000000000000023671303000000000000000228045000000000000000000000000010157000000000000000000000010000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000
...............TG----------TT--AATACGGCTA-------------AAA---CGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211155.0015500000000000001000000000000100000000000000000000000000000000000000000000000000000000000090000000000000000075000000000000000000000000000000000000000000000000000001300415600000000000000067100100000000000000000000000002010000000000000000000000100000000000010000100000000000000000000030000000000000000000000160000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTCAA-TTGAG---------------------TTTCAC......................................................................................................................................................................................................................201155.0015500000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000116000000000000000000000000000000000000000000000000000001767171000000000000000070313010000000000000000000000000302000000000000000000000000000000000001000000000000000000000000001000000000000000000000030000000000000000000000000000
....................................................................................................................................................................................................AAACATTTCTC-TGCTTCAT------------CG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................211152.0015200000000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000623000000000000000000000000000000000000000000000000000001819016000000000000000049130100000000000000000000000003900000000000000000000000000000000000000000200000000000000000000020000000000000000000000250000000000000000000000000000
.........................................................................................TC--------C------------------------------------------------------------AATACGATCG------------------------AAAAACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211151.0015100000000000000000000000000161000000000000000000000000000000000000000000000000000000000001000000000000000037500000000000000000000000000000000000000000000000000000100272600000000000000000316101400000000000000000000000005911000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000
.........ACAATTTG----------TT--AATACGGCTA-------------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211149.00149000000000000010000000000001000000000000000000000000000000000000000000000000000000000000110000000000000000238190000000100000000000000000000000000000000000000000000017000400000000000000004930030000000000000000000000000002000000000000000000000000000000000001000000000000000000000000001000000000000000000000050000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA-------------GCA----------------------TCGA--AGGCAACTC...............................201145.001450000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000271533161400000000000000023300220000000000000000000000000332000000000000000000000000000000000000000010000000000000000000001000000000000000000000040000000000000000000000000000
....................................................................................CCAAATC--------C------------------------------------------------------------AATACGATCG------------------------AA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201145.001450000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000010600000000000000000000000000000000000000000000000000000222301900000000000000006920010000000000000000000000000241000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000
...............................................................................TAACTCCAAATC--------C------------------------------------------------------------AATACGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................221143.0014300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000350000000000000000000000000000000000000000000000000000002632017500000000000000044210020000000000000000000000000100000000000000000000000000000000000001000010000000000000000000001000000000000000000000020000000000000000000000000000
.............................................................................TCTAACTCCAAATC--------C------------------------------------------------------------AATACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211143.0014300000000000000000000000000010000000000000000000000000000000000000000000000000000000000020000000000000000151500000000000000000000000000000000000000000000000000000121971650000000000000003204030000000000000000000000000744000000000000000000000000000000000005000010000000000000000000001000000000000000000000080000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAACAATTATAGCGGAT..........................................................................................................211141.0014100000000000001000000000000100000000000000000000000000000000000000000000000000000000000110000000000000000114000000000000000000000000000000000000000000000000000003501101300000000000000004120010000000000000000000000000763000000000000000000000000000000000001000000000000000000000000002000000000000000000000072000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TAGA--GATGGACTGAAG--------------------------------------GGGGGG............................................................................................................................................................................................................................................................................................................................................221140.0014000000000000001000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000009007450000000000000001024690000000000000000000000000213413000000000000000000000000000000000003000010000000000000000000003000000000000000000000011000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGGATAATTAACAAAATG.............................................................................................211139.001390000000000000000000000000090000000000000000000000000000000000000000000000000000000000002000000000000000011100000000000000000000000000000000000000000000000000000920056000000000000000061153110000000000000000000000000101180000000000000000000000100000000000010000000000000000000000000000000000000000000000000180000000000000000000000000000
.....................................................................................CAAATC--------C------------------------------------------------------------AATACGATCG------------------------AAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201138.001380000000000000000000000000040000000000000000000000000000000000000000000000000000000000001000000000000000050200000000000000000000000000000000000000000000000000000140001440000000000000007249010000000000000000000000000071000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................CACACGAGATAGA--GATGGAC.............................................................................................................................................................................................................................................................................................................................................................................................201138.0013800000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000700622000000000000000000000000000000000000000000000000000009120416400000000000000021231210000000000000000000000000854000000000000000000000000000000000004000010000000000000000000003000000000000000000000020000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAAAACAAAA-------------GCA----------------------TCGA--........................................211136.0013600000000000000000000000000100000000000000000000000000000000000000000000000000000000000010000000000000000301000000000000000000000000000000000000000000000000000007101012000000000000000052711140000000000000000000000000772000000000000000000000010000000000001000020000000000000000000002000000000000000000000030000000000000000000000000000
....................................................................................................................................................................................................................................................................................ATAGA--GATGGACTGAAG--------------------------------------GG................................................................................................................................................................................................................................................................................................................................................191135.0013500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001400312500000000000000027600360000000000000000000000000495000000000000000000000000000000000002000010000000000000000000006000000000000000000000040000000000000000000000000000
.......................................................................................................................................................................................................CATTTCTC-TGCTTCAT------------CGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................211135.0013500000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000401000000000000000000000000000000000000000000000000000001215002880000000000000004354020000000000000000000000000611000000000000000000000000000000000000000000000000000000000000003000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAAAA-------------GCA----------------------TCGA--AGGC....................................211134.0013400000000000000000000000000400000000000000000000000000000000000000000000000000000000000010000000000000000704000000000000000000000000000000000000000000000000000000702170000000000000000053817000000000000000000000000014840000000000000000000000000000000000020000000000000000000000000020000000000000000000000110000000000000000000000000000
...................................................................................................................................................................................................................................................................................GATAGA--GATGGACTGAAG--------------------------------------GG................................................................................................................................................................................................................................................................................................................................................201134.00134000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004130000000000000000000000000000000000000000000000000000010001180000000000000000278003500000000000000000000000006115000000000000000000000010000000000001000000000000000000000000000000000000000000000000021000000000000000000000000000
.....................................................................................................................................................................................................AACATTTCTC-TGCTTCAT------------CG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................201133.00133000000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000000000000001130000000000000000000000000000000000000000000000000000022115222700000000000000020570600000000000000000000000002000000000000000000000000100000000000000000100000000000000000000030000000000000000000000120000000000000000000000000000
...................................................................................TCCAAATC--------C------------------------------------------------------------AATACGATCG------------------------AA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211131.0013100000000000000000000000000120000000000000000000000000000000000000000000000000000000000020000000000000000259000000010000000000000000000000000000000000000000000002323015000000000000000023615120000000000000000000000000014000000000000000000000000000000000000000010000000000000000000001000000000000000000000011100000000000000000000000000
........................................................................................ATC--------C------------------------------------------------------------AATACGATCG------------------------AAAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201129.001290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000130004000000000000000005448000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCAA-TTGAG---------------------TTTCACTT....................................................................................................................................................................................................................211128.00128000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000004320000000000000000000000000000000000000000000000000000015001500000000000000004965110000000000000000000000000475000000000000000000000010000000000002000010000000000000000000005000000000000000000000080000000000000000000000000000
.......................................................................................................................................................................................................CATTTCTC-TGCTTCAT------------CGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................201127.001270000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000026000000001000000000000000000000000000000000000000000000229021200000000000000004640070000000000000000000000000562000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG---------------------TTTCACTTTCC------------------------------------------------------------------------TTCATA...................................................................................................................................211126.001260000000000000000000000000020000000000000000000000000000000000000000000000000000000000006000000000000000014217003000010000000000000000000000000000000000000000000003001900000000000000004600100000000000000000000000000270000000000000000000000000000000000000000020000000000000000000001000000000000000000000090000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAA-TTGAG---------------------TTTCACTTT...................................................................................................................................................................................................................211126.0012600000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000203000000000000000000000000000000000000000000000000000003200414000000000000000037110080000000000000000000000000203000000000000000000000000000000000001000000000000000000000000001000000000000000000000042000000000000000000000000000
......................................................................................................................................................................................................ACATTTCTC-TGCTTCAT------------CGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................201126.001260000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000010615000000010000000000000000000000000000000000000000000002415305100000000000000001680020000000000000000000000000401000000000000000000000000000000000000000020000000000000000000001000000000000000000000010000000000000000000000000000
.............TTTG----------TT--AATACGGCTA-------------AAA---CG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211121.001210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000315010000000000000000076000100000000000000000000000000200000000000000000000000000000000000040000000000000000000000000000000000000000000000000160000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAATTATAGCGGATAATT......................................................................................................211119.0011900000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000212000000000000000000000000000000000000000000000000000001530109000000000000000638260000000000000000000000000171590000000000000000000000000000000000010000000000000000000000000000000000000000000000000115100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAA-TTGAG---------------------TTTCACTTTCC------------------------------------------------------------------------T........................................................................................................................................221119.00119000000000000000000000000004300000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000020043070000000000000004753130000000000000000000000000341000000000000000000000000000000000000000000000000000000000000007000000000000000000000021000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GA--GATGGACTGAAG--------------------------------------GGGGGG............................................................................................................................................................................................................................................................................................................................................201119.0011900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000359000000000000000000000000000000000000000000000000000007160700000000000000000030028000000000000000000000000016115000000000000000000000010000000000003000010000000000000000000001000000000000000000000030000000000000000000000000000
...........................................................................................................................................................................................................................................................................ACACACGAGATAGA--GATGGA..............................................................................................................................................................................................................................................................................................................................................................................................201119.0011900000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000125000000000000000000000000000000000000000000000000000006007138000000000000000201552300000000000000000000000004101000000000000000000000000000000000003000000000000000000000000004000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AGAATAACACACGAGATAGA--G...................................................................................................................................................................................................................................................................................................................................................................................................211118.0011800000000000000000000000000400000000000000000000000000000000000000000000000000000000000010000000000000000270000000000000000000000000000000000000000000000000000006007160000000000000000150040000000000000000000000000152512000000000000000000000010000000000003000020000000000000000000002000000000000000000000041000000000000000000000000000
.........................................................................................................................................................................................................................................................................TAACACACGAGATAGA--GATGGA..............................................................................................................................................................................................................................................................................................................................................................................................221115.001150000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000210071200000000000000001704318000000000000000000000000061411000000000000000000000010000000000001000010000000000000000000000000000000000000000000022000000000000000000000000000
..............................................................................CTAACTCCAAATC--------C------------------------------------------------------------AATACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211113.0011300000000000001000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000829000000010000000000000000000000000000000000000000000001513001000000000000000003039010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000060000000000000000000000000000
.................................................................................ACTCCAAATC--------C------------------------------------------------------------AATACGATCG------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211112.0011200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000406000000000000000000000000000000000000000000000000000001700317000000000000000010533010000000000000000000000000206000000000000000000000000000000000002000010000000000000000000002000000000000000000000020000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTCTCTCAAGTTCAA-TTG...................................................................................................................................................................................................................................................211111.0011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000901000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000002300000000000000000000000000000000000010000000000000000000000000010000000000000000000000890000000000000000000000000000
....................................................................................................................................................................................................................................................................................ATAGA--GATGGACTGAAG--------------------------------------GGGGT.............................................................................................................................................................................................................................................................................................................................................221110.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000304000000000000000000000000000000000000000000000000000009001133000000000000000020040000000000000000000000000010145000000000000000000000000000000000001000010000000000000000000002000000000000000000000011000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAA-TTGAG---------------------TTTCACTTTC..................................................................................................................................................................................................................201110.001100000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000506023400000000000000051010050000000000000000000000000020000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................GATCG------------------------AAAAACATTTCTC-TGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................211109.00109000000000000000000000000000000000000000000000000000000000000000000000000000000000000001120000000000000000381523000000010000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000170000000000000000000000000000
......................................................................................................................................................................................................................................................C--A-AATCCACAAGAGAATAACA.................................................................................................................................................................................................................................................................................................................................................................................................................211108.001080000000000000100000000000020000000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000900501200000000000000025070260000000000000000000000000751000000000000000000000000000000000000000000000000000000000000001000000000000000000000050000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCAA-TTGAG---------------------TTTCACT.....................................................................................................................................................................................................................201107.00107000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000020001060000000000000005736060000000000000000000000000101000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................ATAACACACGAGATAGA--GATGG...............................................................................................................................................................................................................................................................................................................................................................................................221106.001060000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000760401100000000000000024002400000000000000000000000009101000000000000000000000000000000000003000010000000000000000000003000000000000000000000052100000000000000000000000000
......................................................................................................................................................................................................................................................................................AGA--GATGGACTGAAG--------------------------------------GGGT..............................................................................................................................................................................................................................................................................................................................................191105.001050000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400400000000000000000153004600000000000000000000000001182000000000000010000000020000000000002000000000000000000000000002000000000000000000000030000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGAAAACAAAA-------------GCA----------------------TCG...........................................211105.001050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000200065000000000000000016040150000000000000000000000000361000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................A--GATGGACTGAAG--------------------------------------GGGGGG............................................................................................................................................................................................................................................................................................................................................191104.001040000000000000000000000000030000000000000000000000000000000000000000000000000000000000001000000000000000021100000000000000000000000000000000000000000000000000000100432000000000000000100146000000000000000000000000014121000000000000000000000010000000000002000010000000000000000000002000000000000000000000050000000000000000000000000000
.......................................................................................AATC--------C------------------------------------------------------------AATACGATCG------------------------AAAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211104.0010400000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000001513002600000000000000002506050000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000
...................................................................................TCCAAATC--------C------------------------------------------------------------AATACGATCG------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201104.0010400000000000000000000000000220000000000000000000000000000000000000000000000000000000000000000000000000000029000000000000000000000000000000000000000000000000000002160119000000000000000023010100000000000000000000000000520000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
TCGAAGCTGAAAGCCTG----------GTCAACTGTGGCTC-------------AAAGTATTTGT-----------ATCTCGCTCAAAGCC--------C------------------------------------------------------------AATCCGATCG------------------------GAAAACCTTTCTT-TCCTTCTT------------CGAGCCGA--AACACGCTC--A-ATTCCACAAGAGAATAACACACGAGACAGA--GATGAAC-------------------------------------------------------------------------------------------------------------------TGGGGTCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTTC------------------------------------------------------------------------TTCGTGATTTAAATTAACAATTACAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA---GGC--------ACACCACATCGA--AGGCAACTCCC-CT------------------------GASizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
No Reads
droYak3
TTGAAACTGAAAGCCTA----------CGCAACTACGG------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCTT-TCCTTCAT------------CGATCCGG--AACACGCCC--A-ATTCCA-----------CACACGAGATGGA--GATGAAC-------------------------------------------------------------------------------------------------------------------TGGGGTCTCTCGAGTTCAA-TTGAG---------------------TTTCACTTTCC------------------------------------------------------------------------TTCGTGATTTAAATTAACAATTATAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA---GGC--------ACACCACATCGC--AGGCAACTCCCCCT------------------------GASizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
No Reads
droEug1
CAAGAGCAAACG------------------------------------------------------------------------CCAAAGC--------C--------------------------------AGACCAATCTCCGCTTATCGCTAAC---AATCGGATCA------------------------GAAAACCTTTCTC-TCCTCCAT------------CGATCGGG--AACACGCCC--A-ATTTCATAAGAGAATAACACACGGGAAAGA--GATGGAC-------------------------------------------------------------------------------------------------------------------GAGGGTCTCTCAAGTTCAA-ATGGGCTTTCAGTTTTCAATATTGAGTTTCACTTTCT------------------------------------------------------------------------TTCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAACGAAAACAAAA-------------GCA---GCC--------TCGCCGAATCGA--CGGCAACTCCCCCC------------------------GASizeHit CountTotal NormTotal
No Reads
droBia1
ATGTAATTGA--ATTTG-----------------------------------------------------------ATTTACCCCCAAAGTGTATCTCCCACTCTTCTTTCAAAAGT---------------ACTACAAGCTCCTCTTATCGCCAGC---AATCGGATCA------------------------GAAAACCTTTCAC-TCCTTCAT------------CGATCCGA--AACACGCCC--A-ATTTCATAAGAAAAAAACACATGAGAAAAATGGATGCAC-------------------------------------------------------------------------------------------------------------------GGGGGTCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTTC------------------------------------------------------------------------TTCGAGATTTAAATTAACAATTAAAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA---GGC--------ACACCAAATCGA--AGGCAACACCCCCC------------------------GASizeHit CountTotal NormTotal
No Reads
droTak1
---------------------------------------------------------------------------------------------------C------------------------------------------------------------AATCGGATCA------------------------GAAAACCTTTCTC-TCCTTCAT------------CGATCCGC--AACACGCCC--A-ATTTCATAAGAAAATAACACACGAGCAAGATAGATGGAC-------------------------------------------------------------------------------------------------------------------GGGGGTCTCTAAAGTTCAA-TTGAG---------------------TTTCACTTTTC------------------------------------------------------------------------TTCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA---GGC--------ACACCAAATCGA--AGGCAACACCCCCCAACG--------------------GASizeHit CountTotal NormTotal
No Reads
droEle1
---------------------------------------------------------------------------------------------------C------------------------------------------------------------AATCGGATCA------------------------GAAAACCTTTCTC-TACTTCTC------------AGATCCGA--AACACGCCC--A-ATTTCATAAGAGAATAACACACGAGAAAGA--GATGGCG-------------------------------------------------------------------------------------------------------------------GAGGGTCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTTATTT--------------------------------------------------------------------TTTCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAATGAAAACAAAA-------------ACA---GGC--------ACACCAAATCGA--AGCCAACTCCTCCC------------------------GASizeHit CountTotal NormTotal
No Reads
droRho1
---------------------------------------------------------------------------------------------------C------------------------------------------------------------AATCGGATCA------------------------GAAAACCTTTCTC-TCCTCCTT------------CAAACCGA--AACACGCCC--A-ATTTCATAAGAGAATAACACACGGGAAAGA--GATGGAA-------------------------------------------------------------------------------------------------------------------GAGGGTCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTTC------------------------------------------------------------------------TTCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA---AACCAACACCAACACCAAATCGA--AGGCAACTCCCCCC------------------------GASizeHit CountTotal NormTotal
No Reads
droFic1
TAGGTGGAAACAACTTCAATCCTATACTT--AATCCGGATTTAGAGACCTCAAAAAA---TGGTTGATTAAC-------AACCGTTCAAGTGCATCACCCACACCAC----AAAAGTCAACAATCCCAAGTCAATCCAATCTCCACTTATCGCTTAC---AATCGGATCA------------------------GTAGACCTTTCTC-TCCT-CTT------------CGATCCGA--AACACGCCC--A-ATTTCATAAGAGA-----------------------------------------------------------------------------------------------------------------------------------------------GGGTCTCTCAAGTTCAA-TCGAG---------------------TTTCACTTTTC------------------------------------------------------------------------CCCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAATGAAAACAAAA-------------GCA---GCC--------CCACCAAACCGA--AGGCAACTCCTCTC------------------------GCSizeHit CountTotal NormTotal
No Reads
droKik1
---------------------------------------------------------------------------------------------------C------------------------------------------------------------AATCGGATCA------------------------CAAGACCTTTCTC-TACTTCTCTGC---------AGGCCCGAAAAACACGCCC--A-TTTTCATAAGGGAATAACACACGAGGGGGA--GAGAG---------------------------------------------------------------------------------------------------------------------TGAGAGATCTCAAGTTCAA-TTGAG---------------------TTTCACTTTCCTTC------------------GCC-------------------------------------ACGAAAAAATGTTCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAACGAAAACAAAA-------------GCA---GC----------------------------------CCT------------------------G-SizeHit CountTotal NormTotal
No Reads
dp5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCTTTCTCCTACTCTTT------------CGAT-CGA--ATCACGCCCCGA-AAACCATAAGAGAATTG------------------------AAGAGAAAACCAAGAGGCCCAGAGGGAGGCAGGGTGGCAGGGGGGGGGGGGGGGCTTGGGCAGGGGCCACTCT---------------------------------------------CCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTTTTTTT-TGTT---------------------TTCCTTCTGTTGTTCACTCTTCTCTCCGATGATTATAAAATGTTCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAATGAAAACAAAG-------------GCA----------------------ACGAAAAGGCAACACCCCCTAAAAAACAGAAAACCGAAAGCCAAAASizeHit CountTotal NormTotalM022
Male-body
M040
Female-body
M059
Embryo
M062
Head
V043
Embryo
V051
Head
V112
Male-body
SRR902010
Ovary
SRR902011
Testis
SRR902012
CNS imaginal disc
No Reads
droPer2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCTTTCTCCTACTCTTT------------CGAT-CGA--ATCACGCCCCGA-AAACCATAAGAGAATTG------------------------AAGAGAAAACCAAGAGGCCCAGAGGGAGGCAGGGTGGCAGGGG-----GGGGGGCTTGGGCAGGGGCCACTCT---------------------------------------------CCTCTCAAGTTCAA-TTGAG---------------------TTTCACTTTTTTTTT-T---------------------------CTTCTGTTGTTCACTCTTCTCTCCGATGATTATAAAATGTTCGTGATTTAAATTAACAATTAAAGCGGATAATTAACAAAATGAAAACAAAG-------------GCA----------------------ACGAACAGGCAACACCCCCTAAAAAACAGAAAACCGAAAGCCAAAASizeHit CountTotal NormTotalM021
Embryo
M042
Female-body
V042
Embryo
V050
Head
V057
Head
V111
Male-body
No Reads
droWil2
CAAC---AAAA--------------------------------------------------------------------------------------------------------------------------------ATTCCACTAATCGCCAATTGAGATCGAGCCAAAATGAAACCAAACCAAAGCAAAGCAAAGCCTTTCTC---CTCCAA---ACTTGACATTG-TTCGA--CACACGCCC--A-AAAAAA------A----------------------------------------------------------------------------AAAAAACTTGAGAAAAAAACAATTTCATAAGTAAGAAAATATGAAAAATAACACAAGAAAAAAAAAGAGGTCT-TCAAGTTCAA-TTGCG---------------------TTTCACTTTTTTTTT-T-CTTTTTGCTTCATTATTATTATTTTTTTTTTGTTCCTCACCCCCCTTCC---------------ATTCGTGATTTAAATTAACAATTAAAGCAGATAATTAACAAAATGGAAACACAA------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
.......................................................................................................................................................GCCAATTGAGATCGAGCCAAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
droVir3
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGGGCTTACAATTTCGA-TAGAG---------------------TTTCACTTTTCGCCATTGTTAATCGCCTAGTTGTT-------------------------------------ATTACAATTTTTTCATGATTTAAATTAACAATTAAGCTCGATAATTAACAAAATGAAAACATGGTAAGATAAAAAAAAAAAAAAAACAAAA---ACA-----AC-A--TGGCAACACCCCTCT-----------------------AASizeHit CountTotal NormTotalM027
Male-body
M028
Head
M047
Female-body
M061
Embryo
SRR060654
Ovary
SRR060655
Testis
SRR060656
Ovary
SRR060657
Testis
SRR060658
Ovary
SRR060659
Testis
SRR060660
Ovary
SRR060661
Embryo
SRR060662
Embryo
SRR060663
Embryo
SRR060664
Male-body
SRR060665
Female-body
SRR060666
Male-body
SRR060667
Female-body
SRR060668
Male-body
SRR060669
Female-body
SRR060670
Testis
SRR060671
Male-body
SRR060672
Female-body
SRR060673
Ovary
SRR060674
Ovary
SRR060675
Ovary
SRR060676
Ovary
SRR060677
Ovary
SRR060678
Testis
SRR060679
Testis
SRR060680
Testis
SRR060681
Testis
SRR060682
Embryo
SRR060683
Testis
SRR060684
Embryo
SRR060685
Embryo
SRR060686
Embryo
SRR060687
Embryo
SRR060688
Ovary
SRR060689
Testis
SRR1106712
embryo_0-2h
SRR1106713
embryo_0-2h
SRR1106714
embryo_2-4h
SRR1106715
embryo_4-6h
SRR1106716
embryo_4-6h
SRR1106717
embryo_6-8h
SRR1106718
embryo_6-8h
SRR1106719
embryo_8-10h
SRR1106720
embryo_8-10h
SRR1106721
embryo_10-12h
SRR1106722
embryo_10-12h
SRR1106723
embryo_12-14h
SRR1106724
embryo_12-14h
SRR1106725
embryo_14-16h
SRR1106726
embryo_14-16h
SRR1106727
larvae
SRR1106728
larvae
SRR1106729
mixed whole adult body
SRR1106730
embryo_16-30h
V047
Embryo
V053
Head
V116
Male-body
GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAATTAAGCTCGATAAT.......................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAGATAAAAAAAAAAA...................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AACACGCCC--ACAACTCATAAGAGCATTTC-----------------------AAGATCAGGAGACGGGCCGGCGATGTGGACAGATTATCAAGAGGAGGGGGT--------------------------------------------------------------GGAGTTGGCACGAGCTGAAGTCGAG---------------------TTTCACTTTTCGCTATTGTTAA------------------TCTCAT----------------------------TTCGGCCGTTTCGTGATTTAAATTAACAATTAAAGTCGATAATTAACAAAATGAAAACA---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body
V041
Embryo
V049
Head
V056
Head
M060
Embryo
V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA------------------TCTCAT----------------------------TTCGGCCGTTTCGTGAT.................................................................................................................................2611.001100000

Generated: 05/19/2015 at 01:53 AM