dsi_1848

ACCGAAAGGACTTCGTTTTGGGCTTCGACGAGGCCGATACGATCGAGAAGCGCAATCAGCACAATGACATGGAGCGTCAGCGCCGCATTGGTCTGAAGAACCTCTTTGAGGCTCTGAAGAAACAGATTCCCACCATCAGGGACAAGGAGCGGGCTCCCAAGGTAAATATCCTGCGGGAGGCGGCCAAGCTGTGCATACAGCTGACCCAGGAGGAGCACGAGCTCAGTGTGCAGCGCCAGCTCTTGTCCCT ****************************************************.((((..(((((...(((.((....)).))))))))..))))....((((...)))).((((......))))..............************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M025 embryo	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902008 ovaries	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	O001 Testis
......................................................ATCAGCACAATGACATGGAGCGTCAGC.........................................................................................................................................................................	27	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.CCGAAAGGACTTCGTTTTGGGCG..................................................................................................................................................................................................................................	23	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...............................GGCCGATACGATCGAGAAG........................................................................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................GGCCGATACGATCGAGAAGC.......................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...........................................................CACAATGATATGGAGCGTCAGCGCCGCA...................................................................................................................................................................	28	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................AACAGATTCCCACCATCAGG..............................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..........................................................GCACAATGATATGGAGCGTCAGC.........................................................................................................................................................................	23	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................GCCGATACGATCGAGAAGC.......................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TCAGGGACAAGGAGCGGGCT...............................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................AATCAGCACAATGACATGGA.................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...GAAAGGACTTCGTTTTGGGCTT.................................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......AGGACTTCGTTTTGGGCTT.................................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................................................................CATGGAGCGTCAGCGCCGCATTGGT..............................................................................................................................................................	25	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.................................................GCGCAATCAGCACAATGACATGGAGC...............................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................CAATGACATGGAGCGTCAGCGC.......................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GCTGACCCAGGAGGAGCACGA..............................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1
................................................................TGACATGGAGCGTCAGC.........................................................................................................................................................................	17	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................TCAGGGACAAGGAGCGGGCTCCCA...........................................................................................	24	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................ACAGATTCCCACCATCAGGGACAAGGA......................................................................................................	27	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................TCTTTGAGGCTCTAAAGAAACAGAT...........................................................................................................................	25	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................TGTGCATACAGCTGACCCAGGA.......................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................CTCTTTGAGGCTCTGAAGA..................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....AAGGACTTTGTTTTGGGCTTTGATGAGG.........................................................................................................................................................................................................................	28	3	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................CGCCGCATTGGTCTGAAGAACC....................................................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................CCTCTTTGAGGCTCTGAAGG..................................................................................................................................	20	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................ATTGGTCTGAAGAAC.....................................................................................................................................................	15	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GACCCAGGAGGAGCACGA..............................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AGGGACAAGGAGCGGGCTC..............................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AACGCCTGCTCTTGTCCC.	18	2	2	0.50	1	1	0	0	0	0	0	0	0	0	0
....................................ATACGATCGAGAAGCGC.....................................................................................................................................................................................................	17	0	3	0.33	1	0	0	0	0	0	1	0	0	0	0
..........................GACGAGGTCGAAACGATC..............................................................................................................................................................................................................	18	2	6	0.17	1	0	0	0	0	0	1	0	0	0	0
.........................CTACGAGGCCCATCCGATC..............................................................................................................................................................................................................	19	3	13	0.08	1	0	0	0	0	0	0	0	1	0	0
...............TTTTGGTCTTCAACGAG..........................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................ATGACGACCATCAGGGACA..........................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1	0	0	0	0

TGGCTTTCCTGAAGCAAAACCCGAAGCTGCTCCGGCTATGCTAGCTCTTCGCGTTAGTCGTGTTACTGTACCTCGCAGTCGCGGCGTAACCAGACTTCTTGGAGAAACTCCGAGACTTCTTTGTCTAAGGGTGGTAGTCCCTGTTCCTCGCCCGAGGGTTCCATTTATAGGACGCCCTCCGCCGGTTCGACACGTATGTCGACTGGGTCCTCCTCGTGCTCGAGTCACACGTCGCGGTCGAGAACAGGGA ************************************************************************************************************.((((..(((((...(((.((....)).))))))))..))))....((((...)))).((((......))))..............****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M024 male body	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo
..........................................................................................................................................................AGGGTGCCATTTATAGGTCG............................................................................	20	2	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................TAAGGGTGGTTGTCCGTGTT.........................................................................................................	20	2	4	0.25	1	1	0	0	0	0	0
............................................................................................................................CTACTGCTGGTAGTCCCTGTT.........................................................................................................	21	3	4	0.25	1	1	0	0	0	0	0
.....................................................................................GTAACCAGTCTGCTTGGA...................................................................................................................................................	18	2	5	0.20	1	0	0	1	0	0	0
..............................................................................................................................................................................................................GTCCTACTCGTGCTCG............................	16	1	10	0.20	2	2	0	0	0	0	0
.................................................................................................................................GCTGGTAGTCCCTGT..........................................................................................................	15	1	6	0.17	1	1	0	0	0	0	0
............................................................................................................................CTACTGCTGGTAGTCCCTGT..........................................................................................................	20	3	13	0.08	1	1	0	0	0	0	0
........................................................................................................................................................CGAGGTTAACATTTATAGGA..............................................................................	20	3	15	0.07	1	0	0	0	1	0	0
...............................CCGGATATGATAGCTCCT.........................................................................................................................................................................................................	18	3	20	0.05	1	1	0	0	0	0	0
................................................................................................................................TGCTGGTAGTCCCTGT..........................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0
.............................................TCTTCGAGTTAGCCGTG............................................................................................................................................................................................	17	2	20	0.05	1	1	0	0	0	0	0
...................................................................................................................CGTCTTTGTCTCAGAGTGG....................................................................................................................	19	3	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................................................................................GAGTAGGTCCTACTCGTGCT..............................	20	3	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................ACGTCGCGGTCAAGA.......	15	1	20	0.05	1	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	x:3032593-3032842 +	dsi_1848	ACCG--AAAGGAC----------TTCGTTTTGGGCTTCGACGAGGCCGATACGATCGAGAAGCGCAATCAGCACAATGACATGGAGCGTCAGCGCCGCATTGGTCTGAAGAACCTCTTTGAGGCTCTGAAGAAACAGATTCCCACCATCAGGGACAAGGAGCGGGCTCCCAAGGTAAATATCCTGCGGGAGGCGGCCAAGCTGTGCATACAGCTGACCCAGGAGGAGCACGAGCTCAGTGTGCAGCGCCAGCTCTTGTC------CCT
droSec2	scaffold_10:2983960-2984209 +		ACCG--GAAGGAC----------TTTGTTTTGGGCTTCGACGAGGCCGATACGATCGAGAAGCGCAATCAGCACAATGATATGGAGCGTCAGCGCCGCATTGGTCTGAAGAACCTCTTTGAGGCTCTAAAGAAACAGATTCCCACCATCAGGGACAAGGAGCGGGCTCCCAAGGTAAATATCCTGCGGGAGGCGGCCAAGCTGTGCACCCAGCTGACCCAGGAGGAGCACGAGCTCAGTATGCAGCGCCACTTCTTGTC------CCT
dm3	chrX:3279020-3279269 +		ATCG--GAAGGAC----------TTTGTTTTGGGCTTTGATGAGGCCGATACGATCGAGAAGCGCAATCAGCACAATGATATGGAGCGTCAGCGACGCATTGGACTCAAGAACCTCTTTGAGGCTCTAAAGAAACAGATTCCCACAATTAGGGACAAGGAGCGGGCTCCCAAGGTAAATATCCTGCGAGAGGCGGCCAAGCTATGCATCCAGCTGACCCAGGAGGAGAAGGAGCTTAGTATGCAGCGCCAGCTTTTGTC------GCT
droEre2	scaffold_4690:691331-691580 +		TCCG--GAAGGAC----------TTTGTTTTGGGCCTGGACGAGGCCGAGACGATCGAGAAGCGCAATCAGCACAATGATATGGAGCGCCAGCGCCGCATTGGCCTGAAGAACCTCTTTGAGGCTCTAAAGAAACAGATACCCACGATCAGGGATAAGGAGCGGGCTCCCAAGGTCAATATCCTGCGGGAGGCGGCCAAGCTGTGCACCCAGCTGACCCAGGAGGAGCACGAGCTCAGTCTGCAGCGCCAGGTCTTGGC------CAT
droYak3	X:5098160-5098409 -		TCAG--GAAGGAC----------TTTGTTTTGGGTCTGGACGAGGCGGATACGATCGAGAAGCGCAATCAGCACAATGATATGGAGCGCCAGCGCCGCATTGGCCTGAAGAACCTCTTCGAGGCTCTAAAGAAACAGATTCCCACGATCAGGGACAAGGAGCGGGCTCCCAAGGTCAATATCCTGCGGGAGGCGGCAAAGCTATGCACCCAGCTGACCCAGGAGGAGCACGAGCTCAGTCTGCAGCGCCAGGTCTTGGC------CAT
droEug1	scf7180000409178:52479-52728 +		TCCG--GAAGGAC----------TTTGTTTTGGGTTTGGACGAGGCTGATACGATCGAGAAGCGTAATCAGCATAATGATATGGAGCGCCAGCGTCGCATTGGCTTAAAGAACCTCTTTGAGGCTCTGAAGAAACAGATCCCCACCATTAGGGACAAGGAGCGGGCTCCGAAAGTGAATATACTGCGCGAGGCGGCCAAGTTGTGCACTCAACTGACCCAGGAGGAGCAAGAGTTGAGTAAGCAACGCCAGCTGTTGAG------CAT
droBia1	scf7180000302126:1899741-1899990 -		TCCG--GAAGGAC----------TTTGTCCTCGGACTGGACGAGGCCGATACGATCGAGAAGCGTAATCAGCACAACGACATGGAGCGACAGCGTCGCATCGGGCTGAAGAACCTGTTCGAGGCCCTCAAGAAGCAGATACCCACCATCAGGGACAAGGAGCGGGCGCCCAAGGTGAACATACTGCGCGAGGCGGCCAAGCTGTGCACCCAGCTGACCCAGGAGGAGCAGGAGCTGAGCATGCAGCGCCAGGTGCTGAG------CAT
droTak1	scf7180000415360:254139-254388 +		TCCG--GAAGGAC----------TTTGTTTTGGGCCTGGACGAAGCCGATACGATCGAGAAGCGCAATCAGCACAACGATATGGAGCGACAGCGTCGCATTGGCCTGAAGAACCTCTTTGAGGCTCTGAAGAAACAGATCCCGACGATCAGGGACAAGGAGCGGGCTCCCAAGGTCAATATCCTGCGGGAGGCGGCCAAGCTGTGCACTCAGCTTACCCAAGAGGAGCACGAGTTGAGTATGCAGCGCCAGGTGTTGAG------TAT
droEle1	scf7180000490996:474665-474914 +		TCCG--GAAGGAC----------TTCAGCCTGGGCCTGGACGAGGCCGATACGATCGAGAAGCGCAATCAGCACAATGACATGGAGCGCCAGCGCCGAATTGGCCTGAAGAACCTCTTTGAGGCGCTGAAGAAACAGATTCCCACTATCAGGGACAAGGAGCGGGCTCCCAAGGTGAACATCCTGCGCGAGGCGGCCAAGTTGTGCATCCAGTTGACGCAGGAGGAGCAAGAGCTCAGTTTGCAGCGCCAGCTGTTGAG------TGT
droRho1	scf7180000779337:496087-496336 +		TCCG--GAAGGAG----------TACAGCCTGGGCCTGGACGAGGCCGATACGATCGAGAAGCGCAATCAGCACAACGACATGGAGCGCCAGCGTCGCATTGGCTTGAAGAACCTCTTCGAGGCTCTGAAGAAACAGATCCCCACCATCAGGGACAAGGAGCGGGCTCCCAAGGTTAATATTCTGCGCGAGGCGGCCAAACTGTGCACCCAGCTGACCCAGGAGGAGCATGAGCTCAGTGTGCAGCGCCAGCTGCTGAG------TGT
droFic1	scf7180000454072:40518-40767 -		TGCG--CAAGGAG----------TTCGGTCTGGGGCTGGATGAGGCCGACACGATCGAGAAGCGCAACCAGCACAACGACATGGAGCGGCAGCGCCGTATCGGGCTGAAGAACCTCTTCGAGGCCCTGAAGAAGCAGATCCCCACGATCCGCGACAAGGAGCGGGCTCCCAAGGTCAACATCCTGCGGGAGGCGGCCAAGCTGTGCACCCAGCTCACCCAGGAGGAGCACGAGCTGAGCCTGCAGCGCCAGCTCCTGGC------CGC
droKik1	scf7180000302258:333728-333977 +		GGCG--AAATAAT----------AACCAGTTCAGTTTGGACGAGGCCGATACGATCGAGAAGCGTAATCAGCACAACGATATGGAGCGCCAGCGTCGCATCGGTCTTAAGAACCTGTTCGAGGCGCTCAAGAAGCAGATACCCACCATTCGGGACAAGGAGCGTGCGCCCAAGGTGAATATATTGCGCGAGGCGGCCAAGCTCTGTGAGCAGCTGACCCGCGAGGAGCAGGAGCTCAGCCTGCAGCGCCAGATGCTGAA------AGA
droAna3	scaffold_12613:85130-85364 -		AGCA--ACAGTA-------------------CAGTTTGGACGAGGCGGACACGATCGAGAAGAGGAATCAGCACAACGATATGGAACGACAGCGTCGTATCGGTCTCAAGAATCTATTTGAGGCGCTGAAGAAACAGATCCCGACCATCCGAGACAAGGAGCGGGCGCCCAAGGTGAATATCCTGCGGGAGGCGGCCAAGCTGTGCGAGCAGCTGACCCGCGAGGAGGAGGAGCTAAGCA------GCCAGAAGTTTGC------TCT
droBip1	scf7180000394758:48475-48715 -		AGCA--ACAGTA-------------------CAGCCTGGACGAGGCGGATACGATCGAGAAGCGTAACCAGCACAACGATATGGAGCGACAGCGTCGCATCGGTCTCAAGAATCTGTTCGAGGCACTGAAGAAACAGATTCCCACCATTCGGGATAAGGAGCGGGCACCCAAAGTGAATATATTGCGGGAGGCGGCCAAGCTGTGCGAGCAGCTGACCCGCGAGGAGGAGGAGTTGAGCAGCCAG------AAGTTTGCGCTACACAA
dp5	XL_group1a:7394650-7394875 +		AGCG--G----------------------TTCAGCGTGGACGAGGCCGACACCATCGAGAAGCGCAACCAGCACAACGACATGGAGCGCCAGCGACGCATTGGCCTGAAGAACCTGTTCGAGGCCCTCAAGAAGCAGATACCCACCATTCGGGACAAGGAGCGCGCCCCCAAGGTGAACATACTGCGCGAGGCGGCCAAGCTGTGCGAACAGCTGACCCACGAGGAGCACGACCTGGCCATGGAGTACCA------------------
droPer2	scaffold_13:2037861-2038086 +		AGCG--G----------------------TTCAGCGTGGACGAGGCCGACACCATCGAGAAGCGCAACCAGCACAACGACATGGAGCGCCAGCGACGAATTGGCCTGAAGAACCTGTTCGAGGCCCTCAAGAAGCAGATACCCACCATTCGGGACAAGGAGCGCGCCCCCAAGGTGAACATACTGCGTGAGGCGGCCAAGCTGTGCGAACAGCTGACCCACGAGGAGCACGACCTGGCCATGGAGTACCA------------------
droWil2	scf2_1100000004909:10524358-10524575 -		GCCA--T---------GCTGAAGCGCCAATATAGTTTGGATGAGGCCGATACCATCGAGAAGCGTAATCAGCATAATGATATGGAGCGTCAACGTCGCATCGGACTTAAGAATCTGTTCGAAGCACTCAAAAAGCAAATACCAACCATTCGTGATAAGGAGCGAGCGCCGAAGGTGAATATATTGCGTGAGGCGGCCAAATTGTGTCAGCAATTGACCGAAGATGAGCA---------------------------------------
droVir3	scaffold_12970:8184775-8185036 -		ACAACAGCAGCAACATGCTGAAGCGCCAGCTCAGCATAGACGAGGCGGACACGATCGAGAAGCGCAATCTGCACAACGATATGGAACGTCAGCGGCGCATCGGGCTCAAGAATCTGTTCGAGGCGCTGAAGACGCAGATACCCAATATACGGGACAAGGAGCGTGCACCCAAGGTCAACATATTGCGCGAGGCGGCCAAGCTCTGCGAGCATCTCACCAGCGAGGAGCGCGACCTCAGCCTCAAGCGCCAGCTCCTGAA------GGC
droMoj3	scaffold_6482:1240134-1240377 +		TGA--------AA----------CGTCATCTGAGCGTCGATGAGGCGGATACGATTGAGAAGCGTAATCTGCATAACGATATGGAGCGCCAGCGTCGCATTGGACTTAAGAATCTGTTCGAGGCACTCAAGACGCAAATACCCAACATCAGGGACAAGGAGCGTGCGCCCAAGGTCAACATCTTGAGGGAGGCGGCCAGGCTCTGCGAGCAGCTGACCAGCGAGGAGCGGGACCTGAACGTCAAGCGTCAGCTGTTGAA------GGC
droGri2	scaffold_15203:4107269-4107514 +		ATTA--AAT--------------CGTCAGCTTAGTCTGGATGAGGTGGATACGATTGAGAAGCGTAATCTGCATAACGATATGGAGCGTCAGCGTCGCATCGGACTCAAGAATCTGTTCGAGGCACTGAAGAAGCAGATACCGAATATACGGGACAAGGAGCGTGCCCCCAAGGTCAATATATTGCGTGAGGCGGCCAAATTGTGCGAGCATCTAACCAGCGAGGATCACAGCCTCATGCTCAAGCGTCAACAGTTGAA------GGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ACCG--AAAGGAC----------TTCGTTTTGGGCTTCGACGAGGCCGATACGATCGAGAAGCGCAATCAGCACAATGACATGGAGCGTCAGCGCCGCATTGGTCTGAAGAACCTCTTTGAGGCTCTGAAGAAACAGATTCCCACCATCAGGGACAAGGAGCGGGCTCCCAAGGTAAATATCCTGCGGGAGGCGGCCAAGCTGTGCATACAGCTGACCCAGGAGGAGCACGAGCTCAGTGTGCAGCGCCAGCTCTTGTC------CCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................ATCAGCACAATGACATGGAGCGTCAGC...............................................................................................................................................................................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CCG--AAAGGAC----------TTCGTTTTGGGCG........................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GGCCGATACGATCGAGAAG..............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................GGCCGATACGATCGAGAAGC.............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AACAGATTCCCACCATCAGG....................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GCCGATACGATCGAGAAGC.............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TCAGGGACAAGGAGCGGGCT.....................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................AATCAGCACAATGACATGGA.......................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...G--AAAGGAC----------TTCGTTTTGGGCTT.......................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AGGAC----------TTCGTTTTGGGCTT.......................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CATGGAGCGTCAGCGCCGCATTGGT....................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................GCGCAATCAGCACAATGACATGGAGC.....................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................CAATGACATGGAGCGTCAGCGC.............................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GCTGACCCAGGAGGAGCACGA....................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TGACATGGAGCGTCAGC...............................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................TCAGGGACAAGGAGCGGGCTCCCA.................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................ACAGATTCCCACCATCAGGGACAAGGA............................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGTGCATACAGCTGACCCAGGA.............................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................CTCTTTGAGGCTCTGAAGA........................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................CGCCGCATTGGTCTGAAGAACC..........................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................CCTCTTTGAGGCTCTGAAGG........................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................ATTGGTCTGAAGAAC...........................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GACCCAGGAGGAGCACGA....................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................AGGGACAAGGAGCGGGCTC....................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................ATACGATCGAGAAGCGC...........................................................................................................................................................................................................	17	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

ACCG--GAAGGAC----------TTTGTTTTGGGCTTCGACGAGGCCGATACGATCGAGAAGCGCAATCAGCACAATGATATGGAGCGTCAGCGCCGCATTGGTCTGAAGAACCTCTTTGAGGCTCTAAAGAAACAGATTCCCACCATCAGGGACAAGGAGCGGGCTCCCAAGGTAAATATCCTGCGGGAGGCGGCCAAGCTGTGCACCCAGCTGACCCAGGAGGAGCACGAGCTCAGTATGCAGCGCCACTTCTTGTC------CCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................................GTATGCAGCGCCACTTCTTGT..........	21	1	2.00	2	0	0	2	0
..................................................................................................ATTGGTCTGAAGAACCTCTTTGAGGCT...............................................................................................................................................	27	1	2.00	2	0	0	2	0
.....................................CGACGAGGCCGATACGATCGAGAAGC.............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1
...............................................................GCAATCAGCACAATGATATGGAGCGTC..................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
.......................................................................................GTCAGCGCCGCATTGGTCTGAAGAACC..........................................................................................................................................................	27	1	1.00	1	0	0	1	0
...........................................GGCCGATACGATCGAGAAGC.............................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................GCTCAGTATGCAGCGCCACTTCTT............	24	1	1.00	1	0	0	1	0
.........................TGTTTTGGGCTTCGACGA.................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................CCTGCGGGAGGCGGCCAAGCTGTGC..............................................................	25	1	1.00	1	0	0	1	0
..........................GTTTTGGGCTTCGACGAGGC..............................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
..........................................AGGCCGATACGATCGAGAAGC.............................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
........................................................................................................CTGAAGAACCTCTTTGAGGCT...............................................................................................................................................	21	1	1.00	1	0	0	1	0
........................................................................................................CTGAAGAACCTCTTTGAGGCTCTAAAG.........................................................................................................................................	27	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................CCCAGCTGACCCAGGAGGAGC........................................	21	1	1.00	1	0	0	1	0
........................................................................................................................................................GACAAGGAGCGGGCTCCCAAG...............................................................................................	21	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................CAGTATGCAGCGCCACTTCT.............	20	1	1.00	1	1	0	0	0
....................................TCGACGAGGCCGATACGATCGAGA................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................CCCAGCTGACCCAGGAGGAGCACGAGC..................................	27	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................GAGCACGAGCTCAGTATGCAGCGC....................	24	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................AGGAGGAGCACGAGCTCAGTATGC.........................	24	1	1.00	1	1	0	0	0
.................................................................................................................................................CATCAGGGACAAGGAGCGGGCTCC...................................................................................................	24	1	1.00	1	0	0	1	0
...............................................GATACGATCGAGAAGCGCA..........................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
...............................................................................................................................................................................................................................................ATGCAGCGCCACTTCTTGT..........	19	1	1.00	1	1	0	0	0
.............................................................................GATATGGAGCGTCAGCGCCGCATTGGT....................................................................................................................................................................	27	1	1.00	1	0	1	0	0
....................................................................................................................................................CAGGGACAAGGAGCGGGCTCC...................................................................................................	21	1	1.00	1	0	1	0	0
.............................................................................GATATGGAGCGTCAGCGCCGC..........................................................................................................................................................................	21	1	1.00	1	0	0	1	0
....................................TCGACGAGGCCGATACGATCGAG.................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................GCACCCAGCTGACCCAGGAGG...........................................	21	1	1.00	1	0	0	1	0

dm3

ATCG--GAAGGAC----------TTTGTTTTGGGCTTTGATGAGGCCGATACGATCGAGAAGCGCAATCAGCACAATGATATGGAGCGTCAGCGACGCATTGGACTCAAGAACCTCTTTGAGGCTCTAAAGAAACAGATTCCCACAATTAGGGACAAGGAGCGGGCTCCCAAGGTAAATATCCTGCGAGAGGCGGCCAAGCTATGCATCCAGCTGACCCAGGAGGAGAAGGAGCTTAGTATGCAGCGCCAGCTTTTGTC------GCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................................................................................TCCAGCTGACCCAGGAGGAGAAGGA....................................	25	1	59.00	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	1	15	4	29	0	0	0	0	0
..........................................................................................................................................TTCCCACAATTAGGGACAAGGAGCGGGC......................................................................................................	28	1	53.00	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	6	7	20	0	0	0	0	0
...........................................................................................................................................TCCCACAATTAGGGACAAGGAGCGGGC......................................................................................................	27	1	47.00	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	4	28	0	0	0	0	0
...............................................................................................................................................................................................................TCCAGCTGACCCAGGAGGAGAAGGAGC..................................	27	1	24.00	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	17	0	0	0	0	0
............................................................................................................................................CCCACAATTAGGGACAAGGAGCGGGC......................................................................................................	26	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	11	0	0	0	0	0
.........................TGTTTTGGGCTTTGATGAGGCCGA...........................................................................................................................................................................................................................	24	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TTTGATGAGGCCGATACGATCGAGAAGC.............................................................................................................................................................................................................	28	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0
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..................................................................................................................................................................................TATCCTGCGAGAGGCGGCCAAGCTAT................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AATGATATGGAGCGTCAGCGAC............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................GCGCAATCAGCACAATGATATGGAGC.....................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................CCCAAGGTAAATATCCTGCGAGAG.............................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TGAGGCTCTAAAGAAACAGATTCCCACAA.........................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TTCCCACAATTAGGGACAAGGAGCG.........................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TCCG--GAAGGAC----------TTTGTTTTGGGCCTGGACGAGGCCGAGACGATCGAGAAGCGCAATCAGCACAATGATATGGAGCGCCAGCGCCGCATTGGCCTGAAGAACCTCTTTGAGGCTCTAAAGAAACAGATACCCACGATCAGGGATAAGGAGCGGGCTCCCAAGGTCAATATCCTGCGGGAGGCGGCCAAGCTGTGCACCCAGCTGACCCAGGAGGAGCACGAGCTCAGTCTGCAGCGCCAGGTCTTGGC------CAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................................................................GATAAGGAGCGGGCTCCCAAGGTC............................................................................................	24	1	2.00	2	0	0	0	0	2	0	0
..................................................................................................................................................................................................................................GCACGAGCTCAGTCTGCAGC......................	20	1	1.00	1	0	0	0	0	1	0	0
........AGGAC----------TTTGTTTTGGGCCTG......................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................CTGAAGAACCTCTTTGAGGCT...............................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................ACCCACGATCAGGGATAAGGAGCGG........................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.................................................GACGATCGAGAAGCGCAATC.......................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................ACGAGCTCAGTCTGCAGCGCC...................	21	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................GCTGACCCAGGAGGAGCACGA....................................	21	1	1.00	1	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................CGAGCTCAGTCTGCAGCGCCA..................	21	1	1.00	1	1	0	0	0	0	0	0
............................TTTGGGCCTGGACGAGGCCGAGAC........................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
.....................................................ATCGAGAAGCGCAATCAGCAC..................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................CACCCAGCTGACCCAGGAGGAG.........................................	22	1	1.00	1	0	0	0	0	0	1	0
..............................................................................ATATGGAGCGCCAGCGCCGCA.........................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................AGGGATAAGGAGCGGGCTCCCAAGGTC............................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.................................................GACGATCGAGAAGCGCAATCAGCACAAT...............................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
..................................................................ATCAGCACAATGATATGGAGCGCCAGC...............................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..............................................................................ATATGGAGCGCCAGCGCCGCATTGGCCT..................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................CAATATCCTGCGGGAGGCGGC........................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.........................TGTTTTGGGCCTGGACGA.................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................GGAGCACGAGCTCAGTCTGCAGCGC....................	25	1	1.00	1	0	0	0	0	1	0	0
................................................................................................GCATTGGCCTGAAGAACCTCTTTGAGGC................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................GGTCAATATCCTGCGGGAGGC...........................................................................	21	1	1.00	1	0	1	0	0	0	0	0

droYak3

TCAG--GAAGGAC----------TTTGTTTTGGGTCTGGACGAGGCGGATACGATCGAGAAGCGCAATCAGCACAATGATATGGAGCGCCAGCGCCGCATTGGCCTGAAGAACCTCTTCGAGGCTCTAAAGAAACAGATTCCCACGATCAGGGACAAGGAGCGGGCTCCCAAGGTCAATATCCTGCGGGAGGCGGCAAAGCTATGCACCCAGCTGACCCAGGAGGAGCACGAGCTCAGTCTGCAGCGCCAGGTCTTGGC------CAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................CTGGACGAGGCGGATACGAT.....................................................................................................................................................................................................................	20	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................ACGAGCTCAGTCTGCAGCGCC...................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................................GACAAGGAGCGGGCTCCCAAGGT.............................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.........................................................................................................................................ATTCCCACGATCAGGGACAAGGAGC..........................................................................................................	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.........................TGTTTTGGGTCTGGACGAGGC..............................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.......................................................CGAGAAGCGCAATCAGCACAATGAT............................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................GAAGCGCAATCAGCACAATGATATGGA.......................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................AGCACAATGATATGGAGCGCCAGCGCC............................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................GGAGCACGAGCTCAGTCTGCAGCGC....................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AGCACGAGCTCAGTCTGCAGCGC....................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................CTGGACGAGGCGGATACGATCGA..................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................CTGGACGAGGCGGATACGATCGAGAAGC.............................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GGAGGAGCACGAGCTCAGTCTGCAG.......................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GGTCAATATCCTGCGGGAGGC...........................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.......................TTTGTTTTGGGTCTGGACGAGGC..............................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................GTTTTGGGTCTGGACGAGG...............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................GAGGAGCACGAGCTCAGTCTGCAGCG.....................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CAATATCCTGCGGGAGGCGGCAAAGC...................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................GCCAGCGCCGCATTGGCCTGAAGAAC...........................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GCACCCAGCTGACCCAGGAGGA..........................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................AATATCCTGCGGGAGGCGGC........................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................CGAGGCGGATACGATCGAGAAG..............................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................GATTCCCACGATCAGGGACAAGGAGC..........................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................GGGACAAGGAGCGGGCTCCC..................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
TCAG--GAAGGAC----------TTTGTTTTGGGT.........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................CCTCTTCGAGGCTCTAAAGA........................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................GAAACAGATTCCCACGATCAGG....................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GACAAGGAGCGGGCTCCCAA................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AGCACGAGCTCAGTCTGCAGCGCC...................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................ATATCCTGCGGGAGGCGGCAAAGCC..................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................ACGATCAGGGACAAGGAGCGGGCTCCCA.................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................TTTGTTTTGGGTCTGGACGAGGCGGATAC........................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................CGCATTGGCCTGAAGAAC...........................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................GTTTTGGGTCTGGACGAGGCGG............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................GGAGGAGCACGAGCTCAGTCTGCAGCGC....................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................GGTCTGGACGAGGCGGATACGATC....................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................GTCTGGACGAGGCGGATACGATCGAGA................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................AGATTCCCACGATCAGGGACAAGGAGC..........................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................ATGGAGCGCCAGCGCCGCATTGGCC...................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................GTTTTGGGTCTGGACGAGGC..............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TCCG--GAAGGAC----------TTTGTTTTGGGTTTGGACGAGGCTGATACGATCGAGAAGCGTAATCAGCATAATGATATGGAGCGCCAGCGTCGCATTGGCTTAAAGAACCTCTTTGAGGCTCTGAAGAAACAGATCCCCACCATTAGGGACAAGGAGCGGGCTCCGAAAGTGAATATACTGCGCGAGGCGGCCAAGTTGTGCACTCAACTGACCCAGGAGGAGCAAGAGTTGAGTAAGCAACGCCAGCTGTTGAG------CAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCCG--GAAGGAC----------TTTGTCCTCGGACTGGACGAGGCCGATACGATCGAGAAGCGTAATCAGCACAACGACATGGAGCGACAGCGTCGCATCGGGCTGAAGAACCTGTTCGAGGCCCTCAAGAAGCAGATACCCACCATCAGGGACAAGGAGCGGGCGCCCAAGGTGAACATACTGCGCGAGGCGGCCAAGCTGTGCACCCAGCTGACCCAGGAGGAGCAGGAGCTGAGCATGCAGCGCCAGGTGCTGAG------CAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCCG--GAAGGAC----------TTTGTTTTGGGCCTGGACGAAGCCGATACGATCGAGAAGCGCAATCAGCACAACGATATGGAGCGACAGCGTCGCATTGGCCTGAAGAACCTCTTTGAGGCTCTGAAGAAACAGATCCCGACGATCAGGGACAAGGAGCGGGCTCCCAAGGTCAATATCCTGCGGGAGGCGGCCAAGCTGTGCACTCAGCTTACCCAAGAGGAGCACGAGTTGAGTATGCAGCGCCAGGTGTTGAG------TAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCCG--GAAGGAC----------TTCAGCCTGGGCCTGGACGAGGCCGATACGATCGAGAAGCGCAATCAGCACAATGACATGGAGCGCCAGCGCCGAATTGGCCTGAAGAACCTCTTTGAGGCGCTGAAGAAACAGATTCCCACTATCAGGGACAAGGAGCGGGCTCCCAAGGTGAACATCCTGCGCGAGGCGGCCAAGTTGTGCATCCAGTTGACGCAGGAGGAGCAAGAGCTCAGTTTGCAGCGCCAGCTGTTGAG------TGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCCG--GAAGGAG----------TACAGCCTGGGCCTGGACGAGGCCGATACGATCGAGAAGCGCAATCAGCACAACGACATGGAGCGCCAGCGTCGCATTGGCTTGAAGAACCTCTTCGAGGCTCTGAAGAAACAGATCCCCACCATCAGGGACAAGGAGCGGGCTCCCAAGGTTAATATTCTGCGCGAGGCGGCCAAACTGTGCACCCAGCTGACCCAGGAGGAGCATGAGCTCAGTGTGCAGCGCCAGCTGCTGAG------TGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGCG--CAAGGAG----------TTCGGTCTGGGGCTGGATGAGGCCGACACGATCGAGAAGCGCAACCAGCACAACGACATGGAGCGGCAGCGCCGTATCGGGCTGAAGAACCTCTTCGAGGCCCTGAAGAAGCAGATCCCCACGATCCGCGACAAGGAGCGGGCTCCCAAGGTCAACATCCTGCGGGAGGCGGCCAAGCTGTGCACCCAGCTCACCCAGGAGGAGCACGAGCTGAGCCTGCAGCGCCAGCTCCTGGC------CGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGCG--AAATAAT----------AACCAGTTCAGTTTGGACGAGGCCGATACGATCGAGAAGCGTAATCAGCACAACGATATGGAGCGCCAGCGTCGCATCGGTCTTAAGAACCTGTTCGAGGCGCTCAAGAAGCAGATACCCACCATTCGGGACAAGGAGCGTGCGCCCAAGGTGAATATATTGCGCGAGGCGGCCAAGCTCTGTGAGCAGCTGACCCGCGAGGAGCAGGAGCTCAGCCTGCAGCGCCAGATGCTGAA------AGA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGCA--ACAGTA-------------------CAGTTTGGACGAGGCGGACACGATCGAGAAGAGGAATCAGCACAACGATATGGAACGACAGCGTCGTATCGGTCTCAAGAATCTATTTGAGGCGCTGAAGAAACAGATCCCGACCATCCGAGACAAGGAGCGGGCGCCCAAGGTGAATATCCTGCGGGAGGCGGCCAAGCTGTGCGAGCAGCTGACCCGCGAGGAGGAGGAGCTAAGCA------GCCAGAAGTTTGC------TCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................CGAGAAGAGGAATCAGCACAACGAT............................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
.........GTA-------------------CAGTTTGGACGAGGC..............................................................................................................................................................................................................................	18	1	2.00	2	0	1	1	0	0	0
...................................................................................GAACGACAGCGTCGTATCGGT....................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...................................................................................GAACGACAGCGTCGTATCGGTCTCA................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................GCGGGAGGCGGCCAAGCC..................................................................	18	1	1.00	1	0	1	0	0	0	0
AGCA--ACAGTA-------------------CAGTTTGGACG..................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................................TTTGAGGCGCTGAAGAAACAGATC................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................GGCGCTGAAGAAACAGATCCC..............................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................................................................................ATGGAACGACAGCGTCGTATCGGTCTC.................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................AACAGATCCCGACCATCCGAGACAAGG.............................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................TGCGAGCAGCTGACCCGCGAGGAGGAG......................................	27	1	1.00	1	0	0	0	0	1	0
.......................................................CGAGAAGAGGAATCAGCA...................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.......................................................................................GACAGCGTCGTATCGGTCT..................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................CGGGAGGCGGCCAAGCTGT................................................................	19	1	1.00	1	1	0	0	0	0	0
.................................GTTTGGACGAGGCGGACACGATCG...................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........GTA-------------------CAGTTTGGACGAGGCG.............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................GAATATCCTGCGGGAGGCGGC........................................................................	21	1	1.00	1	0	1	0	0	0	0
..........................................................................................................CAAGAATCTATTTGAGGCGCTGAAGAAAC.....................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.............................................................................GATATGGAACGACAGCGTCGT..........................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
AGCA--ACAGTA-------------------CAGTTTGGACGAGGC..............................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................AGGAGCGGGCGCCCAAGGTGA...........................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................GATATGGAACGACAGCGTCGTATCGG.....................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................ATCCGAGACAAGGAGCGGGC......................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................GCTGTGCGAGCAGCTGACCC.................................................	20	1	1.00	1	0	1	0	0	0	0
.................................GTTTGGACGAGGCGGACACG.......................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................ATATCCTGCGGGAGGCGGCC.......................................................................	20	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................................................GCTGTGCGAGCAGCTGACCCGCGAGGAGG........................................	29	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................GGAGGAGCTAAGCA------GCCAGAAGTTTGC------...	27	1	1.00	1	0	1	0	0	0	0
...........................................................AAGAGGAATCAGCACAACGAT............................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.....................................................ATCGAGAAGAGGAATCAGCACAACGAT............................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.......................................................................CACAACGATATGGAACGACAGCGTCGT..........................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
...................................TTGGACGAGGCGGACACG.......................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................CTGCGGGAGGCGGCCAAGCTGTGCAC............................................................	26	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................GCGAGCAGCTGACCCGCGAGGAGGA.......................................	25	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................GTGCGAGCAGCTGACCCGCGAGGAGGA.......................................	27	1	1.00	1	1	0	0	0	0	0
..............................................GGACACGATCGAGAAGAGGAATC.......................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..................................TTTGGACGAGGCGGACACG.......................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................GCTGACCCGCGAGGAGGAGG.....................................	20	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................AAACAGATCCCGACCATCCGA....................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................CGCGAGGAGGAGGAGCTAAGCA------GCCA..................	26	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................AACAGATCCCGACCATCCGAGA..................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.........GTA-------------------CAGTTTGGACGAGGCGGACACGA......................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1

droBip1

AGCA--ACAGTA-------------------CAGCCTGGACGAGGCGGATACGATCGAGAAGCGTAACCAGCACAACGATATGGAGCGACAGCGTCGCATCGGTCTCAAGAATCTGTTCGAGGCACTGAAGAAACAGATTCCCACCATTCGGGATAAGGAGCGGGCACCCAAAGTGAATATATTGCGGGAGGCGGCCAAGCTGTGCGAGCAGCTGACCCGCGAGGAGGAGGAGTTGAGCAGCCAG------AAGTTTGCGCTACACAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGCG--G----------------------TTCAGCGTGGACGAGGCCGACACCATCGAGAAGCGCAACCAGCACAACGACATGGAGCGCCAGCGACGCATTGGCCTGAAGAACCTGTTCGAGGCCCTCAAGAAGCAGATACCCACCATTCGGGACAAGGAGCGCGCCCCCAAGGTGAACATACTGCGCGAGGCGGCCAAGCTGTGCGAACAGCTGACCCACGAGGAGCACGACCTGGCCATGGAGTACCA------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................................................................................TGAACATACTGCGCGAGGCGGCCAAGC...................................................................	27	1	3.00	3	0	0	0	0	0	0	0	3	0	0
..................................................................................................ATTGGCCTGAAGAACCTGTT......................................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GAACATACTGCGCGAGGC...........................................................................	18	1	3.00	3	0	2	0	0	1	0	0	0	0	0
......G----------------------TTCAGCGTGGACGAGGC..............................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GAACATACTGCGCGAGGCGG.........................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................GACAAGGAGCGCGCCCCCAAGG..............................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................CGACATGGAGCGCCAGCGACGC..........................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CAAGCTGTGCGAACAGCTGACCCACGA.............................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................AAGGAGCGCGCCCCCAAGGT.............................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................CATCGAGAAGCGCAACCAGCACA.................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................ACAACGACATGGAGCGCCAGCGA.............................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GAACATACTGCGCGAGGCGGCCAAGC...................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................AGCAGATACCCACCATTCGG....................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................CGCCAGCGACGCATTGGCCT..................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................GCACAACGACATGGAGCGCCAGC...............................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................GACATGGAGCGCCAGCGACGC..........................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................GCACAACGACATGGAGCGCC..................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GAACAGCTGACCCACGAGGAGC........................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................GGCCTGAAGAACCTGTTCGAGGCCCT.............................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................ACCCACCATTCGGGACAAGGAGCGC........................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................GGACAAGGAGCGCGCCCCCAAGGT.............................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................CATGGAGCGCCAGCGACGCATTGGCCT..................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................GACCCACGAGGAGCACGACCT.................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................TGAAGAACCTGTTCGAGGCCCT.............................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................TGTTCGAGGCCCTCAAGAAGCA....................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GACCCACGAGGAGCACGACCTGGCCATG..........................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GAACATACTGCGCGAGGCGGCCAAGCT..................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................AGAACCTGTTCGAGGCCCTC............................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......G----------------------TTCAGCGTGGACGAGGCCGACAC........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................TCAGCGTGGACGAGGCCGA...........................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................CGACACCATCGAGAAGCGCAACC.......................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................ACATGGAGCGCCAGCGAC............................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................GCAACCAGCACAACGACATGGAG......................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................CGAGGCCGACACCATCGAGAAGC.............................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................GTGAACATACTGCGCGAGGCGGC........................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................AACGACATGGAGCGCCAGC...............................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................CGACGCATTGGCCTGAAGA.............................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................AGCGCAACCAGCACAACGACATGGAG......................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GAACATACTGCGCGAGGCG..........................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGCG--G----------------------TTCAGCGTGGACGAGGCCGACACCATCGAGAAGCGCAACCAGCACAACGACATGGAGCGCCAGCGACGAATTGGCCTGAAGAACCTGTTCGAGGCCCTCAAGAAGCAGATACCCACCATTCGGGACAAGGAGCGCGCCCCCAAGGTGAACATACTGCGTGAGGCGGCCAAGCTGTGCGAACAGCTGACCCACGAGGAGCACGACCTGGCCATGGAGTACCA------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................................GTGCGAACAGCTGACCCACGAGGA..........................................	24	1	5.00	5	4	0	1	0	0	0
...............................................................................................................................................................................GAACATACTGCGTGAGGC...........................................................................	18	1	4.00	4	4	0	0	0	0	0
.............................................................................................GACGAATTGGCCTGAAGAACCTGTT......................................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0
..................................................................................................ATTGGCCTGAAGAACCTGTT......................................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0
..................................................................................................ATTGGCCTGAAGAACCTGTTCGAG..................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
...............................................................................................CGAATTGGCCTGAAGAACC..........................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................GAACATACTGCGTGAGGCGGC........................................................................	21	1	2.00	2	1	0	1	0	0	0
................................................................................................GAATTGGCCTGAAGAACCT.........................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.........................................................................CAACGACATGGAGCGCCAGCGACG...........................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................ACATACTGCGTGAGGCGGC........................................................................	19	1	2.00	2	2	0	0	0	0	0
........................................................................................................CTGAAGAACCTGTTCGAGGCCCT.............................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
..........................................................................................................GAAGAACCTGTTCGAGGCCCT.............................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................GAACATACTGCGTGAGGCGGCCAAGCT..................................................................	27	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................GCGTGAGGCGGCCAAGCTGTGCGAAC..........................................................	26	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................GACCCACGAGGAGCACGACCTGGC..............................	24	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................GAACATACTGCGTGAGGCGGCCAAGCC..................................................................	27	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................GCAGATACCCACCATTCGGGACAAGGAGC..........................................................................................................	29	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................GTGCGAACAGCTGACCCACGAGGG..........................................	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................GTGCGAACAGCTGACCCACGAGGAG.........................................	25	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................CACGACCTGGCCATGGAGT......................	19	1	1.00	1	0	0	0	0	1	0
...........................................................................................................AAGAACCTGTTCGAGGCCCTCAA..........................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................AAGCAGATACCCACCATTCGGG...................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................................................GAACATACTGCGTGAGGCGGCC.......................................................................	22	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................ACGAGGAGCACGACCTGGC..............................	19	1	1.00	1	0	0	0	1	0	0
.......................................................................CACAACGACATGGAGCGCCAGCGACGA..........................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
................................AGCGTGGACGAGGCCGACACCATC....................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droWil2

GCCA--T---------GCTGAAGCGCCAATATAGTTTGGATGAGGCCGATACCATCGAGAAGCGTAATCAGCATAATGATATGGAGCGTCAACGTCGCATCGGACTTAAGAATCTGTTCGAAGCACTCAAAAAGCAAATACCAACCATTCGTGATAAGGAGCGAGCGCCGAAGGTGAATATATTGCGTGAGGCGGCCAAATTGTGTCAGCAATTGACCGAAGATGAGCA---------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................TGTGTCAGCAATTGACCGAAGATGAGC........................................	27	1	3.00	3	0	0	0	3	0
.............................................................................GATATGGAGCGTCAACGTCGCATC.......................................................................................................................................................................	24	1	3.00	3	0	0	2	1	0
..........................................................................................................................................................................................................GTGTCAGCAATTGACCGAAGATGAGC........................................	26	1	2.00	2	0	0	0	2	0
........................................................................................................CTTAAGAATCTGTTCGAAGCACT.............................................................................................................................................	23	1	2.00	2	0	0	1	0	1
...........................AATATAGTTTGGATGAGGCC.............................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	1	0
............................ATATAGTTTGGATGAGGC..............................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	2	0
.............................................................................................................................................CAACCATTCGTGATAAGGAGC..........................................................................................................	21	1	2.00	2	0	0	1	1	0
.................................................................................................................................................................................ATATATTGCGTGAGGCGGCC.......................................................................	20	1	2.00	2	0	0	0	2	0
........................GCCAATATAGTTTGGATGAGGCC.............................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	1	0
.........................................................................................................TTAAGAATCTGTTCGAAGC................................................................................................................................................	19	1	2.00	2	2	0	0	0	0
............................ATATAGTTTGGATGAGGCCGATACC.......................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..............................................................................ATATGGAGCGTCAACGTCGCATCGGA....................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...............................................................................................................ATCTGTTCGAAGCACTCAAAAAGCAAA..................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.............................................................................GATATGGAGCGTCAACGTC............................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................TAAGGAGCGAGCGCCGAAGGT.............................................................................................	21	1	1.00	1	0	0	1	0	0
......................................................................................................................................................GTGATAAGGAGCGAGCGCCGAAG...............................................................................................	23	1	1.00	1	0	0	1	0	0
.......................................ATGAGGCCGATACCATCGAGAAG..............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
................................AGTTTGGATGAGGCCGATACC.......................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.....................................................................................GCGTCAACGTCGCATCGGA....................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................GTGAATATATTGCGTGAGGC...........................................................................	20	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................GGTGAATATATTGCGTGAGGC...........................................................................	21	1	1.00	1	0	0	0	1	0
..........................CAATATAGTTTGGATGAG................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..............................ATAGTTTGGATGAGGCCG............................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.............................................................................................................................................CAACCATTCGTGATAAGG.............................................................................................................	18	1	1.00	1	0	0	0	1	0
..............................ATAGTTTGGATGAGGCCGATAC........................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
................................................................................................................................................CCATTCGTGATAAGGAGC..........................................................................................................	18	1	1.00	1	0	0	0	1	0
..........................................................................AATGATATGGAGCGTCAACGTCGCATC.......................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................CAATTGACCGAAGATGAGC........................................	19	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................GAATATATTGCGTGAGGCGGCC.......................................................................	22	1	1.00	1	0	0	0	1	0
....................................................................................................................................................TCGTGATAAGGAGCGAGCGCC...................................................................................................	21	1	1.00	1	1	0	0	0	0
..................................................ACCATCGAGAAGCGTAATCAGC....................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..............................ATAGTTTGGATGAGGCCGATACCAT.....................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................CGTGATAAGGAGCGAGCGCCGAAGGT.............................................................................................	26	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................AATATATTGCGTGAGGCGGCCA......................................................................	22	1	1.00	1	0	0	0	1	0
.................................................................................TGGAGCGTCAACGTCGCATCGGACT..................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
........................................................................................................CTTAAGAATCTGTTCGAAGCA...............................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..CA--T---------GCTGAAGCGCCAATATAGTTTGGAT...................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................GGTGAATATATTGCGTGA..............................................................................	18	1	1.00	1	0	0	0	1	0
..............................ATAGTTTGGATGAGGCCGATACC.......................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
...............................................................................................................................CAAAAAGCAAATACCAACCATTCGT....................................................................................................................	25	1	1.00	1	0	0	1	0	0
......................................................................................................................................CAAATACCAACCATTCGTGATAAGGAGC..........................................................................................................	28	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................GAGCGCCGAAGGTGAATATATT....................................................................................	22	1	1.00	1	0	1	0	0	0
...............................................................GTAATCAGCATAATGATATGGAGCGT...................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................GAAGGTGAATATATTGCGTGAGGC...........................................................................	24	1	1.00	1	0	0	0	1	0
...........................AATATAGTTTGGATGAGGCCGATAC........................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1
...........................AATATAGTTTGGATGAGGCCGAT..........................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................AATTGACCGAAGATGAGC........................................	18	1	1.00	1	0	0	0	1	0
........................................................................................................................................................GATAAGGAGCGAGCGCCGAAG...............................................................................................	21	1	1.00	1	0	0	1	0	0
..................................................................ATCAGCATAATGATATGGAGCGTC..................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.............................TATAGTTTGGATGAGGCC.............................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................AGCAATTGACCGAAGATGAGC........................................	21	1	1.00	1	0	0	0	1	0
..............................................................................................................................................AACCATTCGTGATAAGGAGCGAGC......................................................................................................	24	1	1.00	1	0	0	0	1	0
...............................................................................................................................CAAAAAGCAAATACCAACCATT.......................................................................................................................	22	1	1.00	1	0	0	0	1	0
.................................................TACCATCGAGAAGCGTAATCA......................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
........................................................................ATAATGATATGGAGCGTCAACGTCG...........................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
............................................GCCGATACCATCGAGAAGCG............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.......................................................................................................................................AAATACCAACCATTCGTGA..................................................................................................................	19	1	1.00	1	0	0	0	1	0
...........................................................................................................................................ACCAACCATTCGTGATAAGGAGC..........................................................................................................	23	1	1.00	1	0	0	0	1	0
..................................................................ATCAGCATAATGATATGGAGCGTCAAC...............................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
...................................TTGGATGAGGCCGATACC.......................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................GAATATATTGCGTGAGGCGGCCA......................................................................	23	1	1.00	1	0	0	0	1	0
...............................................GATACCATCGAGAAGCGTAATCAGC....................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.............................................................................GATATGGAGCGTCAACGTCGCATCGG.....................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
..............................................................................................................................................AACCATTCGTGATAAGGAGC..........................................................................................................	20	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................GCAATTGACCGAAGATGAGC........................................	20	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................GGCCAAATTGTGTCAGCAATT......................................................	21	1	1.00	1	0	0	0	1	0
................................................................................................................TCTGTTCGAAGCACTCAAAAAGCAA...................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................GTGAGGCGGCCAAATTGTGTCAGCA.........................................................	25	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................ATATTGCGTGAGGCGGCCAAATTGT................................................................	25	1	1.00	1	0	0	0	1	0
...............................................................................TATGGAGCGTCAACGTCGCATC.......................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..............................ATAGTTTGGATGAGGCCGATACCATCGA..................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0

droVir3

ACAACAGCAGCAACATGCTGAAGCGCCAGCTCAGCATAGACGAGGCGGACACGATCGAGAAGCGCAATCTGCACAACGATATGGAACGTCAGCGGCGCATCGGGCTCAAGAATCTGTTCGAGGCGCTGAAGACGCAGATACCCAATATACGGGACAAGGAGCGTGCACCCAAGGTCAACATATTGCGCGAGGCGGCCAAGCTCTGCGAGCATCTCACCAGCGAGGAGCGCGACCTCAGCCTCAAGCGCCAGCTCCTGAA------GGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................................................................................................................CTGCGAGCATCTCACCAGCGAGGAGCGC......................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................ACAACGATATGGAACGTCAGC...............................................................................................................................................................................	21	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATCTCACCAGCGAGGAGCGCGAC...................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................ATATACGGGACAAGGAGCGTGCACCCA.................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CAATATACGGGACAAGGAGC..........................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TGAAGCGCCAGCTCAGCATAGACGAGG...............................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CAGCGAGGAGCGCGACCTCAGCCTCAAGC......................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AACGTCAGCGGCGCATCGGGCTCAAG..............................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AGCATAGACGAGGCGGAC..........................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CATAGACGAGGCGGACACGATCGAGAAGCGCAAT........................................................................................................................................................................................................	34	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................ACCCAATATACGGGACAAGGAGC..........................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GCGACCTCAGCCTCAAGCGCCAGCT...............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CACAACGATATGGAACGTCAGC...............................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................TCTGTTCGAGGCGCTGAAGA........................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CTGCGAGCATCTCACCAGCGAGGA..........................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ACGATATGGAACGTCAGCGGC............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CGCGACCTCAGCCTCAAGCGCCAGCTCCT............	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................ATATACGGGACAAGGAGC..........................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GAGCATCTCACCAGCGAGGAGCGC......................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................ATATACGGGACAAGGAGCGT........................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................GTTCGAGGCGCTGAAGAC.......................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GATACCCAATATACGGGACAAGGAG...........................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GGGACAAGGAGCGTGCACCC..................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................ACAACGATATGGAACGTCAGCGGCG...........................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GGTCAACATATTGCGCGAGGCGGC........................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................CTGTTCGAGGCGCTGAAGACGCA....................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CTCTGCGAGCATCTCACCAGC...............................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................AATCTGTTCGAGGCGCTGAA..........................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CGAGGAGCGCGACCTCAGCCT...........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GTCAGCGGCGCATCGGGCT..................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................CCAGCGAGGAGCGCGACCTCAGCCTCA.........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAAGAATCTGTTCGAGGCGCTGAAGAC.......................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATAGACGAGGCGGACACGATCGAGA................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATAGACGAGGCGGACACGATCGA..................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TCTCACCAGCGAGGAGCGCGACC..................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CACCAGCGAGGAGCGCGACCTCAGCCT...........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................GCACCCAAGGTCAACATATTGCGC................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GGCGGCCAAGCTCTGCGAGC..........................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GCAATCTGCACAACGATAT..........................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................AATCTGCACAACGATATGGAACGT...................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AACATATTGCGCGAGGCGGCCAAGCT..................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................ATCGGGCTCAAGAATCTGTTC.....................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CGCGACCTCAGCCTCAAGCGCCAGCTCC.............	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATCTCACCAGCGAGGAGCGCGA....................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................CACGATCGAGAAGCGCAATCTGC....................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GCAATCTGCACAACGATATGGAACGTCA.................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................CACGATCGAGAAGCGCAAT........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................TCTGCGAGCATCTCACCAGCGAGG...........................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................AGGTCAACATATTGCGCGAGGCGGCCA......................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GAAGCGCCAGCTCAGCATA......................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................GAAGCGCAATCTGCACAACGATATGGAA......................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TGTTCGAGGCGCTGAAGACGCA....................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................GACACGATCGAGAAGCGCAATCTGCA...................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CAACATATTGCGCGAGGC...........................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................ACGATCGAGAAGCGCAATCTGCACAAC...............................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GTCAGCGGCGCATCGGGCTCAAG..............................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................TGAAGACGCAGATACCCAAT..........................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................GAATCTGTTCGAGGCGCTGAAGACGC.....................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................GCGCGACCTCAGCCTCAAGC......................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................GCATCTCACCAGCGAGGAGC........................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................CGAGAAGCGCAATCTGCACAACGA.............................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................GGACACGATCGAGAAGCGCAATCTGCAC..................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................AGGAGCGTGCACCCAAGGT.............................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
................................................................................ATGGAACGTCAGCGGCGCATCGGGC...................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................GGACAAGGAGCGTGCACC...................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AACGATATGGAACGTCAGCGGCGC..........................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................ACAACGATATGGAACGTCAGCGGC............................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................ACACGATCGAGAAGCGCAATCTGCACAAC...............................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................GGACACGATCGAGAAGCG............................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AACGATATGGAACGTCAGC...............................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTGCGCGAGGCGGCCAT.....................................................................	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGA--------AA----------CGTCATCTGAGCGTCGATGAGGCGGATACGATTGAGAAGCGTAATCTGCATAACGATATGGAGCGCCAGCGTCGCATTGGACTTAAGAATCTGTTCGAGGCACTCAAGACGCAAATACCCAACATCAGGGACAAGGAGCGTGCGCCCAAGGTCAACATCTTGAGGGAGGCGGCCAGGCTCTGCGAGCAGCTGACCAGCGAGGAGCGGGACCTGAACGTCAAGCGTCAGCTGTTGAA------GGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................GATTGAGAAGCGTAATCTGC....................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.....................................CGATGAGGCGGATACGATTGAGAAGC.............................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................GCCAGGCTCTGCGAGCAGCTGACC..................................................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................GGGACCTGAACGTCAAGCGTCAGCT...............	25	1	1.00	1	1	0	0	0	0	0
........................................................................ATAACGATATGGAGCGCCAGCGT.............................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........................................................................ATAACGATATGGAGCGCCAGCGTCGC..........................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
....................................................................CTGCATAACGATATGGAGCGCCAGC...............................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................GCAGCTGACCAGCGAGGAG.........................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................CTTAAGAATCTGTTCGAGGC................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................CGTCAAGCGTCAGCTGTTGAA------G..	22	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................GCTGACCAGCGAGGAGCGGGAC...................................	22	1	1.00	1	0	0	0	1	0	0
..............................................................................................................................................................................................................................................CGTCAAGCGTCAGCTGTT............	18	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................GCAGCTGACCAGCGAGGAGCGGGACCT.................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................GAATCTGTTCGAGGCACTCAA..........................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
............................................GCGGATACGATTGAGAAGCGTAAT........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
................................................ATACGATTGAGAAGCGTAATCTG.....................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...........................ATCTGAGCGTCGATGAGGCGGAT..........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................CAACATCTTGAGGGAGGCGGC........................................................................	21	1	1.00	1	0	0	0	0	0	1
...............................................................................................................ATCTGTTCGAGGCACTCAAGA........................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................CGGGACCTGAACGTCAAGCGTCAGCTG..............	27	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................GCGAGCAGCTGACCAGCGAGGAGCG.......................................	25	1	1.00	1	1	0	0	0	0	0

droGri2

ATTA--AAT--------------CGTCAGCTTAGTCTGGATGAGGTGGATACGATTGAGAAGCGTAATCTGCATAACGATATGGAGCGTCAGCGTCGCATCGGACTCAAGAATCTGTTCGAGGCACTGAAGAAGCAGATACCGAATATACGGGACAAGGAGCGTGCCCCCAAGGTCAATATATTGCGTGAGGCGGCCAAATTGTGCGAGCATCTAACCAGCGAGGATCACAGCCTCATGCTCAAGCGTCAACAGTTGAA------GGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................................................................................................................................................CCAGCGAGGATCACAGCCTCATGCT...........................	25	1	1.00	1	1	0
.....................................................................................................................................................CGGGACAAGGAGCGTGCCCCCAAGGT.............................................................................................	26	1	1.00	1	1	0
..........................CAGCTTAGTCTGGATGAGGTGGATA.........................................................................................................................................................................................................................	25	1	1.00	1	1	0
.............................................................................................................................................................................................................................................TGCTCAAGCGTCAACAGTTGAA------GG.	24	1	1.00	1	1	0
.................................................................................TGGAGCGTCAGCGTCGCATCGGACTCA................................................................................................................................................................	27	1	1.00	1	1	0
......................................................TTGAGAAGCGTAATCTGCA...................................................................................................................................................................................................	19	1	1.00	1	1	0
...................................................................................................................................................TACGGGACAAGGAGCGTGCC.....................................................................................................	20	1	1.00	1	0	1

dsi_1848

x:3032643-3032792 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-20.6	-20.6	-20.2