dsi_18462

five_prime_UTR [2l_9605988_9606162_-]; exon [2l_9605988_9606162_-]; intron [2l_9606163_9606687_-]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GGCAATTGCCAAAGAATACGGCGCACAAAGTCGGGCGAAAACAAACAGCGCGTGCAGGCTAAACATGAAAAGTAGTATAGGAAAATATAAATAACAATTAATAATCCCCTCATTTTGGCCGCGCCTGTATGCGTGTAGTGACCGCTCGTATGTGTACGTGTGAGTAATCCGAACAATAACTATATTATATACATAAATAGCGAGCGATCTGCATTAAATGAGAGAAAAATCACATAAAAAGAAAAACGAA *******************************************************************************************************************(((((((..(((((((((.(((....)))..)))))))))))))).))..........*************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M025 embryo	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	O002 Head	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
.....................................................................................................................................................ATGTGTACGTGTGAGTAATCCGAACA...........................................................................	26	0	1	2.00	2	0	2	0	0	0	0	0
.....................................................................................................................GCCGCGCCTGTATGCC.....................................................................................................................	16	1	1	1.00	1	0	0	1	0	0	0	0
........................................................................................................................................AGTGACCGCTCGTATGTG................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
...................GGCGCACAAAGTCGGGCG.....................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................GCCGCGCCTGTATGCGTGTAGTGAC............................................................................................................	25	0	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................TGCATTAAATGAGAGAAAAATCACATA..............	27	0	1	1.00	1	0	0	0	1	0	0	0
......CGCCAAAGAATACGGC....................................................................................................................................................................................................................................	16	1	4	0.25	1	0	0	0	1	0	0	0
...........................................AACAGTGCGTGAAGGCT..............................................................................................................................................................................................	17	2	9	0.11	1	0	0	1	0	0	0	0
...................................................................................................................................................................................................AATAGCGAGAGATCT........................................	15	1	11	0.09	1	0	0	1	0	0	0	0
.............................................................................TAGGAAATTAAAAATAAGAATTA......................................................................................................................................................	23	3	12	0.08	1	0	0	0	0	0	1	0
.....................................................................AAGGAGTATGGGAAAATAAAA................................................................................................................................................................	21	3	14	0.07	1	0	0	1	0	0	0	0
.................................................................................................................................................................................................................TGCACAAAATGAGGGAAAAAT....................	21	3	19	0.05	1	0	0	1	0	0	0	0
................................................................................................................TTTAGGTAGCGCCTGTAT........................................................................................................................	18	3	20	0.05	1	0	0	0	1	0	0	0
........................................................................................................................................................CGGACGTGTGAGTAAT..................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	1

CCGTTAACGGTTTCTTATGCCGCGTGTTTCAGCCCGCTTTTGTTTGTCGCGCACGTCCGATTTGTACTTTTCATCATATCCTTTTATATTTATTGTTAATTATTAGGGGAGTAAAACCGGCGCGGACATACGCACATCACTGGCGAGCATACACATGCACACTCATTAGGCTTGTTATTGATATAATATATGTATTTATCGCTCGCTAGACGTAATTTACTCTCTTTTTAGTGTATTTTTCTTTTTGCTT *************************************************************************(((((((..(((((((((.(((....)))..)))))))))))))).))..........*******************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	M023 head	SRR553485 Chicharo_3 day-old ovaries
...................CCGCGTGTTGCAGCCCC......................................................................................................................................................................................................................	17	2	10	1.00	10	10	0	0	0	0
.........................................................................................................................................................CGTGCACAGTCATTAGGGTTGT...........................................................................	22	3	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................ACGCAATTTTCTCTCTTTGTAGT..................	23	3	2	0.50	1	0	0	1	0	0
...................CCGCGTGTTGCAGCCC.......................................................................................................................................................................................................................	16	1	2	0.50	1	1	0	0	0	0
...............................................CGCGCACGTCGGGTCTGTA........................................................................................................................................................................................	19	3	9	0.11	1	0	0	0	1	0
...................CCGCGTGTTGCAGCCCT......................................................................................................................................................................................................................	17	2	9	0.11	1	1	0	0	0	0
................................................................................................TAATTATTAGTGGAG...........................................................................................................................................	15	1	10	0.10	1	0	0	0	0	1
..................TCCGCGTGTTGCAGCCC.......................................................................................................................................................................................................................	17	2	12	0.08	1	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2l:9606113-9606362 -	dsi_18462	GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACAAAGTCGG-GCGAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAAAG---------TA-GTATAG-------GA-------------------------------------------------------------------------------------------------------------------------------------------------AAATATAAATAACAA------TTAATAATCCCC----T--C----------------------------A---T-TTT------GG------CCGCGCCTGTATGCGTGTAGTGACCGCT----CGTATGTGT--AC--GTGTGAGTAATCCGAACAATA---ACTATAT---TATATACATAAATAGCGAGCGATCTGCATTAAATGAG---------AGAAAAA--TCACA-TA---------------AAAAGAAA----AACGAA
droSec2	scaffold_3:5355343-5355592 -		GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACAAAGTCGG-GCGAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAAAG---------TA-GTATAT-------GA-------------------------------------------------------------------------------------------------------------------------------------------------AAATATAAATAACAA------TTAATAATCCCC----T--C----------------------------A---T-TTT------GG------GCGCGCCTGTATGCGTGTAGTGACCGCT----CGTATGTGT--AC--GTGTGAGTAATCCGAACCATA---ACTATAT---TATATACATAAATAGCGAGCGATCTGCATTAAATGAG---------AGAAAAA--TCACT-TA---------------AAAAGAAA----AACGAA
dm3	chr2L:9907733-9907984 -		GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GTGAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAGAG---------TA-GTATAG-------GA-------------------------------------------------------------------------------------------------------------------------------------------------AAATATAAATAACAA------TTAATAATCCCC----T--C----------------------------A---T-TTT------GG------CCGCGCCTGTATGCGTGTAGTGACCGCT----TGTATGTGT--ACGTGTGAGAGTAATCCGAACAATA---ACTATAT---TATATACATAAATAGCGAGCGATCTGCATTAAATGAG---------AGAAAAA--TCACAATA---------------AAAAGAAA----AACGAA
droEre2	scaffold_4929:10523765-10524016 -		GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GTGAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAAAG---------TA-GTATAG-------GA-------------------------------------------------------------------------------------------------------------------------------------------------ACATATAAATAACAA------TTAATAATCCCC----T--C----------------------------A---T-TTT------GG------ATGCGCTTGTATGCGTGTAGTGACCGAT----CGTATGTGT--AC--GTGTGAGTAATCCGAACAATA---ACTATAG---TATATACATATATAGCGAGCGATCTGCATTAAGTGAG---------AGA-AAA--TCACA-CA---------------AAAAGAAAAACCAACGAA
droYak3	2L:12598796-12599051 -		GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GTGAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAACAG---------TA-GTATAG-------GA-------------------------------------------------------------------------------------------------------------------------------------------------ACATATAAATAACAA------TTAATAATCCCCC---T--C----------------------------A---T-TTT------GG------CCGCTCTGGTATGCGTGTAGTGACCGAT----CGTATGTGT--AC--GTGTGAGTAATCCGAACAATA---ACTATATAAGTGTATACATATACAGCGAGCGATCTGCATTAAATGAGAA-------GAAAAAA--TCACA-CA---------------A---GAAAAACCAACGAA
droEug1	scf7180000409554:5005414-5005653 +		GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTTGG-GGGAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAATA-A----------ATATAT-------GA-------------------------------------------------------------------------------------------------------------------------------------------------AAATATAAATAACAA------TTAATAATCCCC-------C----------------------------A---C-TTT------GG-----C----G-TTGTATGGGTGTAGTGACCGATAATATGTATGTTTAAAA--GTGTGAGTAACCCGAAGAATA---ACTATAA---T---------TTTAGCGAGCGATCTGCATTAAAAGAG---------AGAAAAA--TCACA-CA---------------AAAAGAAA----AACGAA
droBia1	scf7180000301468:6992-7240 -		GGCAATTG---------------------CCAGGGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GCGA-AACAA-ACAGCGCGTGCAG--G---------CCAAACATGAAATA-ATAAAA--TACGTGTAT-------GA-------------------------------------------------------------------------------------------------------------------------------------------------GAATATAAATAAGAA------TTATTAATCCCC----T--C----------------------------C-----CCCCTTTCTGG-----C----G-GTGTATGCGTGTAGTGAT--------CGTATGTGT--GCGTGTGTGAGTAATCCGAACAATA---ACCATAG---T--ATACATATACAGCGAGCGATCTGCATTAAGAGAG---------AGAAGAA--TCACG-CA---------------AA-AG--A----AACGAA
droTak1	scf7180000415667:613285-613508 +		GGCAATTG---------------------CCAGAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GCAAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAATA-A----------CTATATGAA-AATGA-------------------------------------------------------------------------------------------------------------------------------------------------AAATATAAATAAGAA------TTAATAATCCCC----G--C--------------------------------C-TTT------GG----GC----GCATGTATG-----------------------TGTGA--GC--GTGTGAGTAGTCCGAACAATA---ACTATAC---TATA-------ATAGCGAGCGATCTGCATTAAAAGAG---------AGAAGAA--TCACA-CA---------------AGAAGA-A----AACGAA
droEle1	scf7180000491186:2953828-2954054 -		GGCAATTG---------------------CCAAAGTA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GGGAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAACA-A----------ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATAAATAAGAA------TTAATAATCCCC----C--T----------------------------A---C-TTT------GG-----C----G-ATGTATGCGTGTAGTGAGC--------GTATGTGT--TAG-TTGTGAGTAATCCGAACAATAA-AACTAT----------------TTAGCGAGCGATCTGCATTAAGAGAGAG-------TGAAAAA--TCACA-CA---------------AAAAGA-A----AACGAA
droRho1	scf7180000779234:289386-289599 +		GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-G-GAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATAAATAAGAA------TTAATAATCCCC-------C----------------------------A---C-TTT------GG-----C----G-ATGTATGCGTGTAGTGACC--------GTATGTGT--AA--GTGTGAGTAATCCGAACAATAA-AACT------------------ACAGCGAGCGATCTGCATTAAAAGAG---------AGAAAAA--TCACA-CA---------------AAAAGA-A----AACGAA
droFic1	scf7180000454144:323910-324137 -		GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGGAGCAAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAATA-A----------ATATAT-------G---------------------------------------------------------------------------------------------------------------------------------------------------TATATAAATAAGAA------TTAATAATCCCT-------C------------------------------------T------GGCATGGC----A-ATGTATGTGTGTAG----------------------------TGTGAGTAATCCGAACAATAA-AACTAT----------------TTAGCGAGCGATCTGCATTAAAAGAGAG-----AGAGAAAAA--TCACA-CAAAAAA---CAAAAATA----AAAAAGCAACCAA
droKik1	scf7180000302677:219755-219977 +		GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GCAAAAACAAAACGGCGCGTGCAG--G---------CAAAACATGAAAAA------CTGTA--CATAT-------AA-------------------------------------------------------------------------------------------------------------------------------------------------ACATATAAGCAAGAATTAATAATAATAATCCCC------------------------------------------------------------------TGTATGTGTGTAGTGACC-------CGTATGTGT--AC--CTGTGAGTAATCCGACCAAGA---ACTAT----------------ATAGCGAGCGATCTGCATGAAAGGAG---------AGC-AAA--TCACG-CA---------------GAAAG--A----AACGAA
droAna3	scaffold_12916:13747488-13747724 -		GGCAAATG---------------------CCAAAGAA---CAC----------------A-----------------------------------------------------AA-GCAGCGCGTGCTG--G---------CAAAACAAGAAAAAGA----CTA----TATTG-TACAATAT-------------------------------------------------------------------------------------------------------------------------------------------------GAATAAAAATTTGAA------TTAATATTCCCC----C--A----------------------------A---CTTTTATTTCTGT------A--TGTGTGTGTGTGTGCAGTGACC-------CGTATGTGT--AC--GTGTGAGTAATCCGAAAAAGA--AACT------------------ATAACGAGCGATCTACATTTAAACAAAA-------ATAAAAA--TTAAA-AAAAAAA---AAAAAACAGAA-AAA----AACGAA
droBip1	scf7180000396535:708404-708627 -		GGCAAATG---------------------CCAAAGAC---TTC----------------A-----------------------------------------------------AA-ACAACGCGTGCTG--G---------CAAAACATGACAAAGA----CTA----TATA--TACAATAT-------------------------------------------------------------------------------------------------------------------------------------------------AAATAAAAATTAGAA------TTAATAATCCCC-------A----------------------------A---CGTTT------TT-----T----T-CTGTATGTGTGCAGTGACC-------CGTATGTGT--AC--GTGTGAGTAATCCGAAACAGAA-AACT------------------ATAACGAGCGATCTACATTTAAACAAAAATACAAGAAAAAAT--TCATAAAA---------------AAAAGA-A----AACGAA
dp5	4_group3:262543-262883 +		GGCAATAG---------------------AAGAAGAA----------------------------------------------------------------------------AG-GTAGCGCGCGTGG--A---------GAGAGCAGGAGTAG-A----------AAAT---------AAATAATAAATAACAAGAAAAGCAAATGCAAGTTGGACCGAAGCTTTAAATACTCTAGAAAAACCATCGTCTCTTTGGCGTAGCTTTGGATGAAGTCATCCTATGATTGATCTATTCCAAATGCATAATACTTTCATTGTGGCAATGGTATACAAAT---AA------TTAATAATTCCT----C--C----------------------------CCCTC-TCT------AT------TTGTGTGTGTCTGTGGGTAGTGTCTAGT----TGTGTCCGT--AC--ATGTGAGTAATCCGAAGAATAAGAACTACAA---A--------ATACAGCGAGCGATCTACATTTAA-----------------------------------------------AAGAGA----AACGAA
droPer2	scaffold_1:1737325-1737647 +		GGCAATAG---------------------AAGAAGAA----------------------------------------------------------------------------AG-GTAGCGCGCGTGG--AGAGAGCAGGCGTAACAAGAAAAG---------CA--------------------------------------AATGCAAGTTGGACCGAAGCTTTAAATACTCTAGAAAAACCATCGTCTCTTTGGAGTAGCTTTGGATGAAGTCATCCTATGATTGATCTATTCCAAATGCATAATACTTTCATTGTGGCAATGGTATACAAAT---AA------TTAATAATTCCT----C--C----------------------------CCCTC-TCT------AT------TTGTGTGTGTCTGTGGGTAGTGTCTAGT----TGTGTGCGT--AC--ATGTGAGTAATCCGAAGAATAAGAACTACAA---A--------ATACAGCGAGCGATCTACATTTAA-----------------------------------------------AAGAGA----AACGAA
droWil2	scf2_1100000004577:2512444-2512610 -		AAA--------------------------------------------------------------------------------------------------------------AA-GTAGCGCGTGCAA--G---------AAACAAAAAAAAAA--------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------AAACATAAAAATAAA------TTAATAATAATCTTCAAACA-----ACA----AC--------------A---A-ATT------AT-----T----T-CTGTATGTATGTA-------------TGTATGTAT--GT--ATCTGAG---------------------------------------TAGCGAGCGGTCTACAATACAAAAA---------AAACAAA--ACAAA-AA---------------AAAATAAA----AACGAA
droVir3	scaffold_12963:14545034-14545288 -		TAGAATTA---------------------TAAATGA----TAC----------------A------------TGCATACATATATCACGC----AGA-ATTTGA-AGAAAAACA--AAAGCGCGTGCAA--G---AG----CAAAACATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAA------TTAATATCTATGC---T--TATTTCACATGCCAGGCCATATA----------C-CGT--ATCTGA----------GTGTGTGTGAG---AGCGCGCGCG----TGTGTGTGT--GT--GTGTGAGTAATAGCCAAGAGA---AC--------------------TAGCGAGCGATCTAAAAAA-ACGAAAA-------ACAGAAA--TAAAA-CAACAAAATACAAA---AAAA-AAA----AAGAAA
droMoj3	scaffold_6500:17463985-17464216 -		GA-------------------------------GGTA---TGC----------------G-------GCACATGTG----TCTAATTCGCAAATACA-AATTTG-TTAAAAACAA-A-TGCGCGTGCAAAAAAAGAG-----CAAACATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAAA------TTAATTTCTATGC---T--TATTTTATATGTTAAGCATTATACACAACGCCTC-TAT------GT------T------TGTG---------------------TGCGTGTGT--GT--GTGTGACTAATAG--CCAAGAA-AA--------------------CTAGCGAGCGATCTAAAAAACGAAAA---------ACA--AAATATAAA-CG---------------AAAATT-A----CGCGAA
droGri2	scaffold_15252:8241288-8241533 -		GCAAAT-GAATAGAAATATTAATTGTATGCCATAAAAATATATATGTATGTATGTATGTGTGTGTTTGTGTGTGTGTGTATCTATAACGC----A-----------------GAA-AAAGCGCGTGCAA--G---AA----CAAA-----AACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAAA------TTAATATCTATGC---T--ACTTATACATGGCATG-----------------------------------C----C-TTGTGTGTGTGT---GTGTGCA----TGTGTGTGT--GT--GTGTGAGTAA---GAGCTAAGA-GACT------------------AAAACGAGCGATCTACACAA------------------------------CG---------------AAAATAAT----AACAAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACAAAGTCGG-GCGAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAAAG---------TA-GTATAG-------GA-------------------------------------------------------------------------------------------------------------------------------------------------AAATATAAATAACAA------TTAATAATCCCC----T--C----------------------------A---T-TTT------GG------CCGCGCCTGTATGCGTGTAGTGACCGCT----CGTATGTGT--AC--GTGTGAGTAATCCGAACAATA---ACTATAT---TATATACATAAATAGCGAGCGATCTGCATTAAATGAG---------AGAAAAA--TCACA-TA---------------AAAAGAAA----AACGAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGT--AC--GTGTGAGTAATCCGAACA................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................G------CCGCGCCTGTATGCC..................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGACCGCT----CGTATGTG.........................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................G-------GCGC-----------------------ACAAAGTCGG-GCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................G------CCGCGCCTGTATGCGTGTAGTGAC.........................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTAAATGAG---------AGAAAAA--TCACA-TA---------------..................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACAAAGTCGG-GCGAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAAAG---------TA-GTATAT-------GA-------------------------------------------------------------------------------------------------------------------------------------------------AAATATAAATAACAA------TTAATAATCCCC----T--C----------------------------A---T-TTT------GG------GCGCGCCTGTATGCGTGTAGTGACCGCT----CGTATGTGT--AC--GTGTGAGTAATCCGAACCATA---ACTATAT---TATATACATAAATAGCGAGCGATCTGCATTAAATGAG---------AGAAAAA--TCACT-TA---------------AAAAGAAA----AACGAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GTGAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAGAG---------TA-GTATAG-------GA-------------------------------------------------------------------------------------------------------------------------------------------------AAATATAAATAACAA------TTAATAATCCCC----T--C----------------------------A---T-TTT------GG------CCGCGCCTGTATGCGTGTAGTGACCGCT----TGTATGTGT--ACGTGTGAGAGTAATCCGAACAATA---ACTATAT---TATATACATAAATAGCGAGCGATCTGCATTAAATGAG---------AGAAAAA--TCACAATA---------------AAAAGAAA----AACGAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTATGCGTGTAGTGACCG.......................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACCGCT----TGTATGTGT--ACG...................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCGAGCGATCTGCATTAAATGAG---------..................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAATAGCGAGCGATCTGC.....................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TCACAATA---------------AAAAGAAA----AACG..	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................AGAG---------TA-GTATAG-------GA-------------------------------------------------------------------------------------------------------------------------------------------------AAAT.........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TGAAAACAA-ACAGCGCGTGCAG--G---------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTATGCGTGTAGTGA..........................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CAG--G---------CTAAACATGAAGAG---------TA-GT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCGTGTAGTGACCGCT----TG...............................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................A-AGTCGG-GTGAAAACAA-ACAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGCCTGTATGCGTGATC.............................................................................................................................................................	19	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GTGAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAAAG---------TA-GTATAG-------GA-------------------------------------------------------------------------------------------------------------------------------------------------ACATATAAATAACAA------TTAATAATCCCC----T--C----------------------------A---T-TTT------GG------ATGCGCTTGTATGCGTGTAGTGACCGAT----CGTATGTGT--AC--GTGTGAGTAATCCGAACAATA---ACTATAG---TATATACATATATAGCGAGCGATCTGCATTAAGTGAG---------AGA-AAA--TCACA-CA---------------AAAAGAAAAACCAACGAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGT--AC--GTGTGAGT..........................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................TT------GG------ATGCGCTTGTATGCGTGTAGT............................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG---------AGA-AAA--TCACA-CA---------------AAAAGAA...........	23	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................G---------CTAAACATGAAAAG---------TA-G............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.................................AGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................A-ACAGCGCGTGCAG--G---------CTAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGTGAG---------AGA-AAA--TCA......................................	18	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATATATAGCGAGCGATCTGC.....................................................................	24	1	1.00	1	0	1	0	0	0	0	0
.....................................................................GC-----------------------ACA-AGTCGG-GTGAAAACAA-ACAGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTAAGTGAG---------AGA-AAA--T........................................	19	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGACCGAT----CGTATGTGT--AC--GT................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGAT----CGTATGTGT--AC--GTGT..............................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGTGTAGTGACCGAT----CGTAT............................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATTAAGTGAG---------AGA-AAA--T........................................	21	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................AACAA-ACAGCGCGTGCAG--G---------CT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATATATAGCGAGCGATCTG......................................................................	23	1	1.00	1	0	0	0	0	1	0	0

droYak3

GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GTGAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAACAG---------TA-GTATAG-------GA-------------------------------------------------------------------------------------------------------------------------------------------------ACATATAAATAACAA------TTAATAATCCCCC---T--C----------------------------A---T-TTT------GG------CCGCTCTGGTATGCGTGTAGTGACCGAT----CGTATGTGT--AC--GTGTGAGTAATCCGAACAATA---ACTATATAAGTGTATACATATACAGCGAGCGATCTGCATTAAATGAGAA-------GAAAAAA--TCACA-CA---------------A---GAAAAACCAACGAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCGAT----CGTATGTGT--AC--GTGTGAGT..........................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATGCGTGTAGTGACC........................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT----CGTATGTGT--AC--GTGTGAGTAATCC.....................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GAACAG---------TA-GTATAG-------GA-------------------------------------------------------------------------------------------------------------------------------------------------ACATAT.......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCGAACAATA---ACTATATAAGTGT.............................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATGTGT--AC--GTGTGAGT..........................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GG------CCGCTCTGGTATGCGTGTAGTGACCGA......................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGAT----CGTATGTGT--AC--GTGTGAGT..........................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAGTGACCGAT----CGTAC............................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATATACAGCGAGCGATCTGCA....................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACCGAT----CGTATGTGT--AC--GTGT..............................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................AACAA-ACAGCGCGTGCAG--G---------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGAT----CGTATGTGT--AC--GT................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATACAGCGAGCGATCT.......................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTTGG-GGGAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAATA-A----------ATATAT-------GA-------------------------------------------------------------------------------------------------------------------------------------------------AAATATAAATAACAA------TTAATAATCCCC-------C----------------------------A---C-TTT------GG-----C----G-TTGTATGGGTGTAGTGACCGATAATATGTATGTTTAAAA--GTGTGAGTAACCCGAAGAATA---ACTATAA---T---------TTTAGCGAGCGATCTGCATTAAAAGAG---------AGAAAAA--TCACA-CA---------------AAAAGAAA----AACGAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGCAATTG---------------------CCAGGGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GCGA-AACAA-ACAGCGCGTGCAG--G---------CCAAACATGAAATA-ATAAAA--TACGTGTAT-------GA-------------------------------------------------------------------------------------------------------------------------------------------------GAATATAAATAAGAA------TTATTAATCCCC----T--C----------------------------C-----CCCCTTTCTGG-----C----G-GTGTATGCGTGTAGTGAT--------CGTATGTGT--GCGTGTGTGAGTAATCCGAACAATA---ACCATAG---T--ATACATATACAGCGAGCGATCTGCATTAAGAGAG---------AGAAGAA--TCACG-CA---------------AA-AG--A----AACGAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGCAATTG---------------------CCAGAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GCAAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAATA-A----------CTATATGAA-AATGA-------------------------------------------------------------------------------------------------------------------------------------------------AAATATAAATAAGAA------TTAATAATCCCC----G--C--------------------------------C-TTT------GG----GC----GCATGTATG-----------------------TGTGA--GC--GTGTGAGTAGTCCGAACAATA---ACTATAC---TATA-------ATAGCGAGCGATCTGCATTAAAAGAG---------AGAAGAA--TCACA-CA---------------AGAAGA-A----AACGAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGCAATTG---------------------CCAAAGTA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GGGAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAACA-A----------ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATAAATAAGAA------TTAATAATCCCC----C--T----------------------------A---C-TTT------GG-----C----G-ATGTATGCGTGTAGTGAGC--------GTATGTGT--TAG-TTGTGAGTAATCCGAACAATAA-AACTAT----------------TTAGCGAGCGATCTGCATTAAGAGAGAG-------TGAAAAA--TCACA-CA---------------AAAAGA-A----AACGAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-G-GAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATAAATAAGAA------TTAATAATCCCC-------C----------------------------A---C-TTT------GG-----C----G-ATGTATGCGTGTAGTGACC--------GTATGTGT--AA--GTGTGAGTAATCCGAACAATAA-AACT------------------ACAGCGAGCGATCTGCATTAAAAGAG---------AGAAAAA--TCACA-CA---------------AAAAGA-A----AACGAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGGAGCAAAAACAA-ACAGCGCGTGCAG--G---------CTAAACATGAAATA-A----------ATATAT-------G---------------------------------------------------------------------------------------------------------------------------------------------------TATATAAATAAGAA------TTAATAATCCCT-------C------------------------------------T------GGCATGGC----A-ATGTATGTGTGTAG----------------------------TGTGAGTAATCCGAACAATAA-AACTAT----------------TTAGCGAGCGATCTGCATTAAAAGAGAG-----AGAGAAAAA--TCACA-CAAAAAA---CAAAAATA----AAAAAGCAACCAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGCAATTG---------------------CCAAAGAA---TAC----------------G-------GCGC-----------------------ACA-AGTCGG-GCAAAAACAAAACGGCGCGTGCAG--G---------CAAAACATGAAAAA------CTGTA--CATAT-------AA-------------------------------------------------------------------------------------------------------------------------------------------------ACATATAAGCAAGAATTAATAATAATAATCCCC------------------------------------------------------------------TGTATGTGTGTAGTGACC-------CGTATGTGT--AC--CTGTGAGTAATCCGACCAAGA---ACTAT----------------ATAGCGAGCGATCTGCATGAAAGGAG---------AGC-AAA--TCACG-CA---------------GAAAG--A----AACGAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GGCAAATG---------------------CCAAAGAA---CAC----------------A-----------------------------------------------------AA-GCAGCGCGTGCTG--G---------CAAAACAAGAAAAAGA----CTA----TATTG-TACAATAT-------------------------------------------------------------------------------------------------------------------------------------------------GAATAAAAATTTGAA------TTAATATTCCCC----C--A----------------------------A---CTTTTATTTCTGT------A--TGTGTGTGTGTGTGCAGTGACC-------CGTATGTGT--AC--GTGTGAGTAATCCGAAAAAGA--AACT------------------ATAACGAGCGATCTACATTTAAACAAAA-------ATAAAAA--TTAAA-AAAAAAA---AAAAAACAGAA-AAA----AACGAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................CGTGCTG--G---------CAAAACAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGCGATCTACATTTA................................................................	19	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAGTGACC-------CGTATGTGT--......................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT--AC--GTGTGAGTAATCCGAAAAAG..............................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................CAC----------------A-----------------------------------------------------AA-GCAGCGCGTGCTG--G---------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAGAA-AAA----AACGAA	18	4	0.25	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAA---AAAAAACAGAA-AAA----A.....	21	20	0.05	1	0	1	0	0	0	0

droBip1

GGCAAATG---------------------CCAAAGAC---TTC----------------A-----------------------------------------------------AA-ACAACGCGTGCTG--G---------CAAAACATGACAAAGA----CTA----TATA--TACAATAT-------------------------------------------------------------------------------------------------------------------------------------------------AAATAAAAATTAGAA------TTAATAATCCCC-------A----------------------------A---CGTTT------TT-----T----T-CTGTATGTGTGCAGTGACC-------CGTATGTGT--AC--GTGTGAGTAATCCGAAACAGAA-AACT------------------ATAACGAGCGATCTACATTTAAACAAAAATACAAGAAAAAAT--TCATAAAA---------------AAAAGA-A----AACGAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

GGCAATAG---------------------AAGAAGAA----------------------------------------------------------------------------AG-GTAGCGCGCGTGG--A---------GAGAGCAGGAGTAG-A----------AAAT---------AAATAATAAATAACAAGAAAAGCAAATGCAAGTTGGACCGAAGCTTTAAATACTCTAGAAAAACCATCGTCTCTTTGGCGTAGCTTTGGATGAAGTCATCCTATGATTGATCTATTCCAAATGCATAATACTTTCATTGTGGCAATGGTATACAAAT---AA------TTAATAATTCCT----C--C----------------------------CCCTC-TCT------AT------TTGTGTGTGTCTGTGGGTAGTGTCTAGT----TGTGTCCGT--AC--ATGTGAGTAATCCGAAGAATAAGAACTACAA---A--------ATACAGCGAGCGATCTACATTTAA-----------------------------------------------AAGAGA----AACGAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAA---A--------ATACAGCGAGCGAT.........................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACAA---A--------ATACAGCGAGC............................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GCAAGTTGGACCGAAGCTTTAAATA............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GT----TGTGTCCGT--AC--ATGTGAGTAATC......................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCGAAGAATAAGAACTACAA---................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAGT----TGTGTCCGT--AC--ATGTGAGTA.........................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACAA---A--------ATACAGCGAGCGA..........................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GCAAGTTGGACCGAAGCT...................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---A--------ATACAGCGAGCGATCTACA....................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCGAAGAATAAGAACTACAA---A--------A......................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GGCAATAG---------------------AAGAAGAA----------------------------------------------------------------------------AG-GTAGCGCGCGTGG--AGAGAGCAGGCGTAACAAGAAAAG---------CA--------------------------------------AATGCAAGTTGGACCGAAGCTTTAAATACTCTAGAAAAACCATCGTCTCTTTGGAGTAGCTTTGGATGAAGTCATCCTATGATTGATCTATTCCAAATGCATAATACTTTCATTGTGGCAATGGTATACAAAT---AA------TTAATAATTCCT----C--C----------------------------CCCTC-TCT------AT------TTGTGTGTGTCTGTGGGTAGTGTCTAGT----TGTGTGCGT--AC--ATGTGAGTAATCCGAAGAATAAGAACTACAA---A--------ATACAGCGAGCGATCTACATTTAA-----------------------------------------------AAGAGA----AACGAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAGT----TGTGTGCGT--AC--ATGTGAGTA.........................................................................................................................	27	1	2.00	2	0	1	0	0	0	1
................................................................................................................................................................................................................................................................GGAGTAGCTTTGGATGAAGT................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTAGTGTCTAGT----TGTG.............................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
............................................................................................................................CGTGG--AGAGAGCAGGCGTAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.GCAATAG---------------------AAGAAGAA----------------------------------------------------------------------------AG-GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1

droWil2

AAA--------------------------------------------------------------------------------------------------------------AA-GTAGCGCGTGCAA--G---------AAACAAAAAAAAAA--------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------AAACATAAAAATAAA------TTAATAATAATCTTCAAACA-----ACA----AC--------------A---A-ATT------AT-----T----T-CTGTATGTATGTA-------------TGTATGTAT--GT--ATCTGAG---------------------------------------TAGCGAGCGGTCTACAATACAAAAA---------AAACAAA--ACAAA-AA---------------AAAATAAA----AACGAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAT--GT--ATCTGAG---------------------------------------TAGCGAGC............................................................................	23	1	1.00	1	0	0	1	0	0

droVir3

TAGAATTA---------------------TAAATGA----TAC----------------A------------TGCATACATATATCACGC----AGA-ATTTGA-AGAAAAACA--AAAGCGCGTGCAA--G---AG----CAAAACATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAA------TTAATATCTATGC---T--TATTTCACATGCCAGGCCATATA----------C-CGT--ATCTGA----------GTGTGTGTGAG---AGCGCGCGCG----TGTGTGTGT--GT--GTGTGAGTAATAGCCAAGAGA---AC--------------------TAGCGAGCGATCTAAAAAA-ACGAAAA-------ACAGAAA--TAAAA-CAACAAAATACAAA---AAAA-AAA----AAGAAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................A--AAAGCGCGTGCAA--G---AG----CAAAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAATAGCCAAGAGA---AC--------------------TAGCGA..............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................AGGCCATATA----------C-CGT--ATCTGA----------GTGT.........................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................ATGC---T--TATTTCACATGCCA.......................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................C---T--TATTTCACATGCCAGGCCAT.................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................AAAGCGCGTGCAA--G---AG----CAAAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGA---AC--------------------TAGCGAGCGATCT.......................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA---AC--------------------TAGCGAGCGATCT.......................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TGA-AGAAAAACA--AAAGCGCGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................GCCATATA----------C-CGT--ATCTGA----------GTGTGTG......................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................TGC---T--TATTTCACATGCCAGGCCA..................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................ATA----------C-CGT--ATCTGA----------GTGTGTGT.....................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGT--GT--GTGTGAGTAATAGC....................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAA--TAAAA-CAACAAAATA.........................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAA-ACGAAAA-------ACAGAAA--.........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAAGAGA---AC--------------------TAGCGAGC............................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GT--ATCTGA----------GTGTGTGTGAG---AGC............................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GC---T--TATTTCACATGCCAGGCCATATA----------C-C.................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAAGAGA---AC--------------------TAGCGAGCGAT.........................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AC--------------------TAGCGAGCGATCTAAAAAA-A...............................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................AAAGCGCGTGCAA--G---AG----CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGCGATCTAAAAAA-AACG............................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GA-------------------------------GGTA---TGC----------------G-------GCACATGTG----TCTAATTCGCAAATACA-AATTTG-TTAAAAACAA-A-TGCGCGTGCAAAAAAAGAG-----CAAACATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAAA------TTAATTTCTATGC---T--TATTTTATATGTTAAGCATTATACACAACGCCTC-TAT------GT------T------TGTG---------------------TGCGTGTGT--GT--GTGTGACTAATAG--CCAAGAA-AA--------------------CTAGCGAGCGATCTAAAAAACGAAAA---------ACA--AAATATAAA-CG---------------AAAATT-A----CGCGAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................CCTC-TAT------GT------T------TGTG---------------------TGCGT............................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.A-------------------------------GGTA---TGC----------------G-------GCACATGTG----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AT------GT------T------TGTG---------------------TGCGTGTGT--GT--GT................................................................................................................................	22	9	0.11	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................AT------GT------T------TGTG---------------------TGCGTGTGT--......................................................................................................................................	18	14	0.07	1	0	0	0	0	0	1

droGri2

GCAAAT-GAATAGAAATATTAATTGTATGCCATAAAAATATATATGTATGTATGTATGTGTGTGTTTGTGTGTGTGTGTATCTATAACGC----A-----------------GAA-AAAGCGCGTGCAA--G---AA----CAAA-----AACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAAA------TTAATATCTATGC---T--ACTTATACATGGCATG-----------------------------------C----C-TTGTGTGTGTGT---GTGTGCA----TGTGTGTGT--GT--GTGTGAGTAA---GAGCTAAGA-GACT------------------AAAACGAGCGATCTACACAA------------------------------CG---------------AAAATAAT----AACAAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TGTGTGTGT--GT--GTGTGAGTA.........................................................................................................................	21	16	0.06	1	0	1

dsi_18462

2l:9606163-9606312 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-13.4	-13.2