ID:

dsi_1846

 Coordinate:

3l:2450321-2450470 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3l_2449397_2450320_-]; CDS [3l_2449397_2450320_-]; intron [3l_2450321_2451250_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACCTACCGGAATGAAGAGCAGAATTCATGAAAAACTTTCCATGCTGTGGTGGGTGGGGACGAACCAAGCTCTCTTTTAATCGATATTTAGATGCCTCTAAGTATTAAAAACAGACCAACCTAACACCATTCTTCTCTTGCTGCGTACTTACTACAACAACAACAACTACTACTCCTCCCTGAACCCGAAATCCCCCATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAGTCCGCATCCACATCGCA
**************************************************(((((((((.((.......(((.((((....((((((((((....)))))))))).)))).)))......................(((.((.(((.....)))..)).)))..........)).)))))..))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
.................GCAGAATTCATGAAAAACTTTCCATG............................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................CATAGAAGCTAGAGCAGTA.................................... 19 2 1 1.00 1 0 0 1 0 0 0 0
.........................................................................................................................................................................................................AACTAGAGCAGAACATAAACCGCC......................... 24 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................TGCTTCTCTTGCTCGGTACTT..................................................................................................... 21 3 3 0.67 2 0 0 0 2 0 0 0
................................AACTGTCCATGCTGT........................................................................................................................................................................................................... 15 1 6 0.50 3 0 0 0 0 3 0 0
..............................................................................AGCGACATTGAGATGCCTCTA....................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 1 0
...........................................................................................TGCCTCTAAGTATTATAGCC........................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................................................GTACTTACTACAACAACGGAAA..................................................................................... 22 3 4 0.25 1 0 0 0 0 0 0 1
............................................................................................................................................................CAACAACAACTCGTAGTCCTC......................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 1
..............................ACAACTGTCCATGCTG............................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

TGGATGGCCTTACTTCTCGTCTTAAGTACTTTTTGAAAGGTACGACACCACCCACCCCTGCTTGGTTCGAGAGAAAATTAGCTATAAATCTACGGAGATTCATAATTTTTGTCTGGTTGGATTGTGGTAAGAAGAGAACGACGCATGAATGATGTTGTTGTTGTTGATGATGAGGAGGGACTTGGGCTTTAGGGGGTATCTTTGATCTCGTCTTGTATTTGGCGGACGTTTTCAGGCGTAGGTGTAGCGT
**************************************************(((((((((.((.......(((.((((....((((((((((....)))))))))).)))).)))......................(((.((.(((.....)))..)).)))..........)).)))))..))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR1275487
Male larvae		 M023
head
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR1275483
Male prepupae		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR1275485
Male prepupae		 M025
embryo
.........................................................................................................................................................................ATGAGGGGGGTCTTGGGTT.............................................................. 19 3 20 1508.80 30176 29399 495 65 78 42 17 16 30 6 16 5 3 3 1
.........................................................................................................................................................................ATGAGGGGGGTCTTGGGTTT............................................................. 20 3 12 665.33 7984 7720 163 14 31 14 12 9 8 1 5 1 4 2 0
..........................................................................................................................................................................TGAGGGGGGTCTTGGGCT.............................................................. 18 2 2 30.00 60 57 0 3 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGAGGGGGGTCTTGGGCTT............................................................. 19 2 1 16.00 16 15 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGGGGGTCTTGGGCT.............................................................. 19 2 1 15.00 15 15 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGAGGAGGGTCTTGGGTT.............................................................. 18 2 6 9.00 54 54 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGGGGGTCTTGGGTTTT............................................................ 21 3 3 8.67 26 20 1 1 0 0 0 2 0 2 0 0 0 0 0
.........................................................................................................................................................................ATGAGGAGGGTCTTGGGTT.............................................................. 19 2 2 6.50 13 13 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGAGGAGGGTCTTGGGTTT............................................................. 19 2 3 6.00 18 17 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................GATGAGGGGGGTCTTGGGTTT............................................................. 21 3 4 5.50 22 21 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TATGAGGGGGGTCTTGGGCTT............................................................. 21 3 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GAGGGGGGTCTTGGGCTT............................................................. 18 2 4 4.25 17 17 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGAGGGTCTTGGGTTT............................................................. 20 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGGGGGTCTTGGGCTT............................................................. 20 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................GATGAGGGGGGTCTTGGGTT.............................................................. 20 3 8 3.75 30 28 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGGGGGCCTTGGGTTT............................................................. 20 3 6 2.67 16 7 0 0 0 0 0 6 0 1 0 2 0 0 0
.........................................................................................................................................................................ATGAGGGGGGACTTGGGTT.............................................................. 19 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGGGGGACTTGGGTTT............................................................. 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGGGGGTCTTGGGTTTTA........................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGAGGGGGGACTTGGGTT.............................................................. 18 2 3 2.00 6 5 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGGGGGTCTTGGGGT.............................................................. 19 3 20 1.80 36 34 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TATGAGGAGGGTCTTGGGTT.............................................................. 20 3 6 1.33 8 7 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGAGGGGGGTCTTGGGCTTC............................................................ 20 3 9 1.11 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGAGGGGGGTCTTGGGCTTT............................................................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TGCTAAGAAGAGAACGCCGTAT........................................................................................................ 22 3 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GCACGACGGATGAAGGATGTT.............................................................................................. 21 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGGGGGTCTTGGGCTTC............................................................ 21 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGGGGGTCTTGGGC............................................................... 18 2 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTTGGCGGGCGTTTTCAGGCG............ 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GAGGAGGGTCTTGGGTTT............................................................. 18 2 12 0.67 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGAGGGGGGTCTTGGGTTTTA........................................................... 21 3 5 0.60 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGGGGGGCTTGGGTTT............................................................. 20 3 11 0.55 6 4 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TATGAGGGGGGTCTTGGGCT.............................................................. 20 3 4 0.50 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGGGGGCCTTGGG................................................................ 17 2 4 0.50 2 0 0 0 0 0 0 1 0 0 0 1 0 0 0
........................................................................................................................................................................GATGAGGCGGGTCTTGGGTTT............................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGAGGGTCTTGGGTTTC............................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGAGGGGGGACTTGGGTTT............................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGGGGGCCTTGGGCT.............................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGGGGGCCTTGG................................................................. 16 2 15 0.47 7 0 0 1 0 0 0 2 0 1 0 3 0 0 0
.........................................................................................................................................................................ATGAGGGGGGTCTTGGG................................................................ 17 2 8 0.38 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGAGGAGGGTCTTGGGGTT............................................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGCGGGTCTTGGGTTT............................................................. 20 3 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGAGGGTCTTGGGT............................................................... 18 2 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GAGGGGGGACTTGGGTTT............................................................. 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCTATCAGTCTACGGAGATT...................................................................................................................................................... 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TATGAGGGGGGACTTGGGTT.............................................................. 20 3 8 0.25 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................GATGAGGGGGGCCTTGGGTT.............................................................. 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TGTTGTTGTTGTTGATGATGA............................................................................. 21 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGAGGGGGGTCTTGGGGTT............................................................. 20 3 8 0.25 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CGATTTCAGGCGTAGGCGAAG... 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TGGTGAGGATGAGGAGGGA...................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................TGAGGAGGGCCTTGGGGT.............................................................. 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................ACCACGGCTTGGTTCGCGAG................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................TATGAGGGGGGTCTTGGGC............................................................... 19 3 12 0.17 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TGTTGTTGTTGTTGATGATG.............................................................................. 20 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AGGGGGGTCTTGGGCTT............................................................. 17 2 15 0.13 2 0 0 0 0 0 0 0 0 1 0 1 0 0 0
.........................................................................................................................................................................ATGAGGGGGCTCTTGGGCT.............................................................. 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................GATGAGGGGGGTCTTGGGT............................................................... 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GAGGGGGGTCTTGGGCT.............................................................. 17 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................AGAACGACGCAAGAA..................................................................................................... 15 1 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................TGAGGAGGGTCTTGGGTTTG............................................................ 20 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................ACGACGCAAGAACGATG................................................................................................ 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGAGTTATCTTTGATCGC......................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:2450271-2450520 - dsi_1846 A-CCTACCGGAATG--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGACGAAC------------------------------------------------------C-AAGCTCTCTTTTAA--------------------------------------TCGAT--ATTTAGA-T--GCC----------T--CT-AAGTA------TTAA---------------------------------------------------------------------------------------------AAACAGACC---AACCTAACA-C---CATTCTTCTCTTGC----TGCG-TACTTACTA-CAACA---------------------ACAACAAC-------------------------TA---C------------T-------------------------------ACTCCTCCCTGAA--C-------C-----------CGAA-----------------------------------------------------------ATCCCC-------------------CATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCCGCATCCACATCGCA--
droSec2 scaffold_2:2583412-2583661 - dse_1001 A-CCTACCGGAATG--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGACGAAC------------------------------------------------------C-AAGCTCTCTTTTAA--------------------------------------TCGAT--ATTTAGA-T--GCC----------T--CT-AAGTA------TTAA---------------------------------------------------------------------------------------------AAACAGACC---AACCTAACA-C---CATTCTTCTCTTGC----TGCG-TACTTACTA-CAACA---------------------ACAACAAC-------------------------TA---C------------T-------------------------------ACTCCTCCCTGAA--C-------C-----------CGAA-----------------------------------------------------------ATCCCC-------------------AATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCCGCATCCACATCGCA--
dm3 chr3L:2562794-2563057 - A-CCTACCGGAATG--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGACGAAA------------------------------------------------------CAAAGCTCTCTTTTAA--------------------------------------TCGAT--ATTTAGA-T--GCC----------T--CT-AAGTA------TTAAAAAAAAAA---------------------------------------------------------------------------------AAAAAAACAGACC---AACCTAACA-C---CATTCTTCTCTTGC----TGCG-TACTTACTA-CAACA---------------------ACAACTAC-------------------------TA---C------------T-------------------------------CCTCCTACCTGAA--C-------C-----------CGAA-----------------------------------------------------------ATCCCC------------------AAATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCCGCATCCACATCGCA--
droEre2 scaffold_4784:2578987-2579240 - A-CCTACCGGAATT--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGACGAAC------------------------------------------------------C-AAGCTCTCTTTTAA--------------------------------------TCGAT--ATTTAGA-T--GCC----------T--CT-AAGTA------TTAAA--------------------------------------------------------------------------------------------AAACAGACC---AACCTAACA-C---CATTCTTCTCTTGC----TGCG-TACTTACTA-CAACA---------------------ACAACAACT-------------------A---CTA---C------------T-------------------------------ACTCCTCCCTGAA--C-------C-----------TGAA-----------------------------------------------------------ATCCCC-------------------AATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCCGCCTCCACATCGCA--
droYak3 3L:9376620-9376878 + A-CCTACCGGAATG--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGATGAAG------------------------------------------------------C-AAGCTCTCTTTTAA--------------------------------------TCGAT--ATTTAGA-T--GCC----------T--CT-AAGTA------TTAA---------------------------------------------------------------------------------------------AAACAGACCAACAACCTAACA-C---CATTCTTCTCTTGC----TGCG-TACTTACTA-CAACA---------------------ACAACCAC-------------------------TA---C------------T-------------------------------ACTCCTCCCTGAA--C-------C-----------TGAA---------CCTGAA--------------------------------------------ATCCCC-------------------AATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCCGCCTCCACATCGCA--
droEug1 scf7180000409466:288110-288389 - A-CCGACTGGAATG--AA-GAACAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGAA------------------------------------------------------AGAAGAAAGCTCTCTTTTAA--------------------------------------TCGAT--ATTTAGA-A--GCC----------T--CT-AAGTA------TTAAA--------------------------------------------------------------------------------------------AAACAGAAC---AACCTAACA-C---CATTCTTCTCTTGC----TGCG-TACTCACCA-CAACAACAA---------CAACAACAACTACTAC-------------------------TA---C------------T-------------------------------ACTACTCCCTGAA--C-------C-----------TGAA---------CCTGAACCTG-------------------------------ATA------TTCCCC----------------AAAAATAGAATCTAGACCAGAA---CATAAACCGCCTGCAAAAGTCCGCCTCCACATCGCA--
droBia1 scf7180000302428:9332341-9332585 - AGTCTACCAGAATG--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGACGATC------------------------------------------------------G-AGGCTCTCCT----------------------------------------------------------------------------TT-AAGTA------CTCAAG------------------------------------------------------------T------A----------------------AAACCAGACC---AACCTAACA-C---CATTCTTCTCTTGC----TGCG-TACTCACCA-CAACA---------------------ACAA---C-------------------------TA---C------------T-------------------------------ACTCCTCCCTGAA--C-------C-----------TGAA--------ACCCGAAAATG-----------------------------------------TCCCC----------------CCGAATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCCGCCTCCACATCGCA--
droTak1 scf7180000415857:335272-335575 - ---CTACTGGAATGTGAA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG----------------TTT-------GGTGGGTGGGGACGAAC----------------CTCCAAAAGGTC--------------------------T----CTCTCTTTTAA--------------------------------------TCGTTAAATTTAGA-A--GCCTCCT----CCT--CC-AAGTATATATATTAA---------------------------------------------------------------------------------------------AAACAGACC---AACTTAACACC---AATTCTTCTCTTGC----TGCG-TACTCACAA-CTACA---------------------ACAACAAC-------------------------AA---C------------T-------------------------------ACTACTCCCTGAA--C-------C-----------TGAA-------------------------------AAATCCAA--CAAAACCCAAAACAAAAAA-------------------AAACAAATAGAAACTAGAACAGAA---CATAAATCGCCTGCAAAAGTCCGCCTCCACATCGCA--
droEle1 scf7180000491249:2839067-2839316 + A-CATTCCGGAATG--AA-GATCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGAAT-C-----------------------------------------------GAAA-AAAAGAAAACA--------------------------------------------------------------------TACTCTATACT--CT-AAGTA------TTAAAAAAA----------------------------------------------------------------------------------ACCAACAAACAGACC---AACTTAACA-C---CATTCTTCTCTTGC----TGCG-TACTCACA--------------------------------------------------------------A---C------------T-------------------------------ACTCCTCCCTGAAAAC-------C-----------TG------------CTGAA----------------AA--------------------------ATCACT-------------AAAAAAAATAGAAACTAGAGCAGAA---TATAAACCGCCTGCAAAAGTCTGCCTCCACATCGCA--
droRho1 scf7180000779552:7333-7596 + A-CCTACTGGAATG--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGACGAAC------------------------------------------------------C-CAGATCTCTTTTAA--------------------------------------TCAAT--ATTTAGA-A--GCC----------T--CT-AAGTA------TTAAACAAAAAA-------------------------------------------------------------------------------AACAAAAAACAGACC---AACTTAACA-C---CATTCTTCTCTTGC----TGCG-TACTCACTA-CAACA---------------------ACAA---C-------------------------TA---C------------T-------------------------------ACTCCTCCCTGAA--C-------C-----------TGCA-----------------------------------------------------------ATCCCC----------------CCAAATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCCGCCTCCACATCGCA--
droFic1 scf7180000454105:886060-886371 - AACCTGCTGGAGCG--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGG-CGATC------------------------------------------------------C-AAGCTCTCT-TTAA--------------------------------------TCGAT--ATTTAGA-A--GCC----------T--CT-AAGTA------TTCAAAAG----------------------------------------------------------C------A------------------------AACAAAAG-CAAACTTAACA-C---CATTCTTCTCTTGC----TGCG-TACTCACCA-CAACA---------------------ACAACAACA-------------------A---CTA---C-------CCAACA-------------------------------AC--TTCCCCGAA--T-------C-----------TGAA---------TCTGAATCTGAATCTGAATCTGAAATCGAAACCGAAACCCAACCGAATCAATCCCC-------------------AATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCGGCCTCGACCTCGCA--
droKik1 scf7180000302441:1139152-1139409 - A-TCTAAT----------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGTTGA--------------------------------------TTAGTGTATTTAGTAT--GCC----------TCTCT-AAGTA------TGCAA-------------------------------------------------------------------------------------------AAATCCGATCA-AAACTTAACA-C---AATTCTTCTCTTGC----TGCG-TACTCACAAACAACAACAA---------CTACAACTACAACAAC-------------------------AA---C------------T-------------------------------ACTCCTCCCTGAAAACAATCAAACAAAAAAATCCCTGAAATCCTGAAAAATGAA------------------------------AC-CAATCGAA------CAC----------------ACAAATAGAAACTAGAGCAGAACAACATAAATCGCCTGCAAAAGTCCGCCTCGACTTCGCA--
droAna3 scaffold_13337:1778319-1778662 + dan_2346 G-C-AACGCGAATG--------CAGAATTCATGAAAGAC-TTTCCATGCTGTG----------------T---------GGTGGGAGGGGAT-CCTAGTCTAAAGTCCTAGAGTCCTAGAGGCC--------------------------T-AGGCTCTT-TCTAA--------------------------------------T-GAT--ATCTAGAAAACGCC----------T--CT-AAGTA------TGCA---------------------------------------------------------------------------------------------------ACC---GACTTAACA-C---ACTTCTTCTCTTGC----TGCG-TACTCACCAACAACAACAA---------CAACA---ACAACAAC----------------------AACTACAACCA--------------------------AACATCTACAACAACTACTACTCCCTGAA--T-------CCAAAAAATATGTTAAATCCTGAATCCTGAA--------------------------------------------ACCCCC--TGACAAAAAAAAAAAAAAACAGAAACAAGAACAGAA---CGCCAATCGCCTTCAAAAGTCCGCCTCCACATCCCA--
droBip1 scf7180000396544:312453-312698 - T-------TGAATG--------CAGAATTCATGAAAGAC-TTTCCATGCTGTG----------------T---------GGTGGGCGGGG----------------------------------------------------------------------TTCTAG--------------------------------------TC-------CTAGA-T--GAT----------A--C--------------------------------------------------------------------------------------------------------------CAACCGACC---AACTTAACA-C---AATTCTTCTCTTGC----TGCG-TACTCACCAACAACAACAA---------CA------ACAACAACT-------------------ACTACTACAAACAACCAACCAACA-------------------------------ACCCCCCCTTGAA------------------------AA-----------------------------------------------------------ACCCCCCTTGAT--------AAAAAAATAGAAACAAGAACAGAA---CGCGAATCGACTTCAAAAGTCCGCCTCGACATCCCA--
dp5 XR_group3a:1368160-1368390 - T-C----GCGAAG---------GAGAATTCATGAAAAAT-GTTACATGCTGTT---------------------------GTGGTGGGGCAT-A--------------------------------------------------------G-AA--TCTCCTCCTACTCCTACCCCTCCCCACTCCCACCCCCACCCCCACCCTTCGTC--CTTTAGAAT-CGCC----------T--CT-AAGTA------TGCAACA------------------------GAGACTGCAAGAACAA-AAACAACAACCAACAAAGT------A----------------------AAAAAACAAA---AACCTAACA-CACAAATTCTTCTCTTGC----GCTGCTACTCACAA-CAACA---------------------ACAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_5:821604-821634 - C-C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CAGCA---------------------ACAACAAC-------------------------TA---C------------T-------------------------------ACGGTTCCCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004729:2190420-2190770 + A-CAAAAAGGAATGC-AA-GAGGAAAATTCATAAGAAATGTTTCCATGCTGTTGCAGCAATCTACTATTTTTT-TTCT---ATGGTGGGGA--------------------------------------------------------------------------------------------------------------------AT--ATTAATT-T--GCC----------TAGCTAAAGTA------ATGCAACA-----------------------GACAAAAAAAAAAAAAGACAAAATAATTAACACAAA------A----------------------AAATCAAAAC---AAAAAAATA-C-CAAATTCTTTTCTTGCGCGTTGCC-TACTTACCA-AACT----------------------GTAA-AACTGCCCCGAACTCCCCCTTTACCACCTAC-CACCACCAACCAACACCTCTGACCCTACCCAACCTCTATTCCAACTGC----------------------------------------------------------------------------------------------------------------------GACAACAGATACTAGATCAGGG---TATAAATCGCTTGCAAAAATCAGCCTCGACATCACA--
droVir3 scaffold_13049:5183091-5183349 - dvi_18411 G-G--AATGCAATGCA-ATG-AGAGAATTCATGAAAAAC-TTTCCATGCGGTT----------------TTTT-TTCCA---------------------------------------------TA-CCTGGGTGCAGATAGCCA--------AA-----------------------------------------------------------------------------------ATAAAGTA------TTAAAAAAAAAAACAACAATTTAGCCTGTAG------------------------------------AACTGTAAAATGCAAGC-------------AAACA-AAA---AACCTAACAAC---AATTCTTCTCTTGC----GCTACTACTCACAA-CAACA---------------------ACAACGAC-------------------------AA---C------------A-------------------------------ACT---------------------------------------------------------------------------------------------------------------------GTAAACAGAAATTAGAACAAAA---CATAAACCGCTTACAAAAATCGGCATCCACATCGCA--
droMoj3 scaffold_6680:3553619-3553891 - dmo_2332 G-G--AATGCAATGCA-ATG-AGAGAATTCATGAAAAAC-TTTCCATGCGGTT----------------TTTTTTTTCA---------------------------------------------TA-CCTGGGTGTAGATAGCCAAAAAAAAAAACA-ACTTAGAA--------------------------------------T---------------------------------GT-AG----------------------------------------------------------------------------AAATGTAAAATGCAAGTGAACAAAACCA--AAACAAACA-AAAACCTAACAAC---AATTCTTCTCTTGC----GCTGATACTCACAA-CAACA---------------------ACAACAAC-------------------------AA---C------------C-------------------------------ACAACATGTTAAA--C----------------------A-----------------------------------------------------------ACT-------------------GTAAACAGAAACTAGAACAAAA---CGTAAATCGCTTACAAAAATCCGCTTCCACTTCGCA--
droGri2 scaffold_15110:9801536-9801806 + G-G--AATGCAATGCA-ATC-AGAGAATTCATGAAAAAC-TTTCCATGCTACA--AGCGGTT-------TTTT-TT----------TGTTGT-A------------------------------TACCCTGGGC----------AAGAAAC-AA---------------------------------------------------------ATTTAGA------C----------T--GT-AG----------------------------------------------------------------------------AAATGTA--ATGC------------------AACCG--A---AACCTAACAAC---AATTCTTCTCTTGC----GCTGTTACTCACAA-CTACAACAATTATTTGTACAACAACAACAACGAC-------------------------AA---C------------C-------------------------------ACATCTACATGAA--C----------------------A-----------------------------------------------------------ACT-------------------GTAAACAGAAATTAGAACAAAA---CGTAAATCGCTTACAAAAATCCGCTTCCACCTCGCATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
A-CCTACCGGAATG--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGACGAAC------------------------------------------------------C-AAGCTCTCTTTTAA--------------------------------------TCGAT--ATTTAGA-T--GCC----------T--CT-AAGTA------TTAA---------------------------------------------------------------------------------------------AAACAGACC---AACCTAACA-C---CATTCTTCTCTTGC----TGCG-TACTTACTA-CAACA---------------------ACAACAAC-------------------------TA---C------------T-------------------------------ACTCCTCCCTGAA--C-------C-----------CGAA-----------------------------------------------------------ATCCCC-------------------CATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCCGCATCCACATCGCA--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................GCAGAATTCATGAAAAAC-TTTCCATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTAGAGCAGAA---CATAAACCGCC...........................2411.00101000000000000000
droSec2
A-CCTACCGGAATG--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGACGAAC------------------------------------------------------C-AAGCTCTCTTTTAA--------------------------------------TCGAT--ATTTAGA-T--GCC----------T--CT-AAGTA------TTAA---------------------------------------------------------------------------------------------AAACAGACC---AACCTAACA-C---CATTCTTCTCTTGC----TGCG-TACTTACTA-CAACA---------------------ACAACAAC-------------------------TA---C------------T-------------------------------ACTCCTCCCTGAA--C-------C-----------CGAA-----------------------------------------------------------ATCCCC-------------------AATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCCGCATCCACATCGCA--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCAGAA---CATAAACCGCCTGC........................2311.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................CATTCTTCTCTTGC----TGCG-TACT..........................................................................................................................................................................................................................................................................................................2211.0010001
dm3
A-CCTACCGGAATG--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGACGAAA------------------------------------------------------CAAAGCTCTCTTTTAA--------------------------------------TCGAT--ATTTAGA-T--GCC----------T--CT-AAGTA------TTAAAAAAAAAA---------------------------------------------------------------------------------AAAAAAACAGACC---AACCTAACA-C---CATTCTTCTCTTGC----TGCG-TACTTACTA-CAACA---------------------ACAACTAC-------------------------TA---C------------T-------------------------------CCTCCTACCTGAA--C-------C-----------CGAA-----------------------------------------------------------ATCCCC------------------AAATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCCGCATCCACATCGCA--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAA---CATAAACCGCCTGC........................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................CTCTTGC----TGCG-TACTTACTA-CAAC................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TACCGGAATG--AA-GAGCAGAATTCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTGAA--C-------C-----------CGAA-----------------------------------------------------------ATCCCC------------------AAAT.........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGAAACTAGAGCAGAA---C.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTAGAGCAGAA---CATAAACCGCCTGC........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCATCCACATCGCA--1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGCAGAA---CATAAACCGCC...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TCTTGC----TGCG-TACTTACTA-CAACA---------------------ACAAC.....................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TACCGGAATG--AA-GAGCAGAATTCATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC-------------------------TA---C------------T-------------------------------CCTCCTACCTGAA--C-------................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
A-CCTACCGGAATG--AA-GAGCAGAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................T--ATTTAGA-T--GCC----------T--CT-AAGTA------TTAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGAA--C-------C-----------CGAA-----------------------------------------------------------ATCCCC------------------AAATAGAAAC...................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ACCGGAATG--AA-GAGCAGAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAA---CATAAACCGCCTGCA.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTACCTGAA--C-------C-----------CGAA-----------------------------------------------------------ATCCCC------------------AAATA........................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACCGCCTGCAAAAGTCC................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................TTCCATGCTGTG---------------------------GTGGGTGGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AAAAAA---------------------------------------------------------------------------------AAAAAAACAGACC---AA.................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA---CATAAACCGCCTGCAAAA....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................TTTCCATGCTGTG---------------------------GTGGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................AAAAAAA---------------------------------------------------------------------------------AAAAAAACAGACC---AA.................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................AAAAAAAAAA---------------------------------------------------------------------------------AAAAAAACAGACC---...................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CAGAATTCATGAAAAAC-TT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTACCTGAA--C-------C-----------CGAA-----------------------------------------------------------A....................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATTCATGAAAAAC-TTTCCATGCTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TACTTACTA-CAACA---------------------ACAACTAC-------------------------TA---C------------T-------------------------------.......................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TGCTGTG---------------------------GTGGGTGGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CTA-CAACA---------------------ACAACTAC-------------------------TA---C------------T-------------------------------.......................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................AAAAAAAAAA---------------------------------------------------------------------------------AAAAAAAC...........................................................................................................................................................................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................GTA------TTAAAAAAAAAA---------------------------------------------------------------------------------AAAA...............................................................................................................................................................................................................................................................................................................................................................1950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TA------TTAAAAAAAAAA---------------------------------------------------------------------------------AAAAAAAC...........................................................................................................................................................................................................................................................................................................................................................2290.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
A-CCTACCGGAATT--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGACGAAC------------------------------------------------------C-AAGCTCTCTTTTAA--------------------------------------TCGAT--ATTTAGA-T--GCC----------T--CT-AAGTA------TTAAA--------------------------------------------------------------------------------------------AAACAGACC---AACCTAACA-C---CATTCTTCTCTTGC----TGCG-TACTTACTA-CAACA---------------------ACAACAACT-------------------A---CTA---C------------T-------------------------------ACTCCTCCCTGAA--C-------C-----------TGAA-----------------------------------------------------------ATCCCC-------------------AATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCCGCCTCCACATCGCA--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAAAAGTCCGCCTCCA.........2011.0010000100
...................................................................................GGTGGGGACGAAC------------------------------------------------------C-AAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
droYak3
A-CCTACCGGAATG--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGATGAAG------------------------------------------------------C-AAGCTCTCTTTTAA--------------------------------------TCGAT--ATTTAGA-T--GCC----------T--CT-AAGTA------TTAA---------------------------------------------------------------------------------------------AAACAGACCAACAACCTAACA-C---CATTCTTCTCTTGC----TGCG-TACTTACTA-CAACA---------------------ACAACCAC-------------------------TA---C------------T-------------------------------ACTCCTCCCTGAA--C-------C-----------TGAA---------CCTGAA--------------------------------------------ATCCCC-------------------AATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCCGCCTCCACATCGCA--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCAGAA---CATAAACCGCC...........................2011.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTGAA--C-------C-----------TGAA---------CCTGAA--------------------------------------------ATCCCC-------------------............................................................2611.00110000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CATAAACCGCCTGCAAAAGT..................2211.00101000000000
droEug1
A-CCGACTGGAATG--AA-GAACAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGAA------------------------------------------------------AGAAGAAAGCTCTCTTTTAA--------------------------------------TCGAT--ATTTAGA-A--GCC----------T--CT-AAGTA------TTAAA--------------------------------------------------------------------------------------------AAACAGAAC---AACCTAACA-C---CATTCTTCTCTTGC----TGCG-TACTCACCA-CAACAACAA---------CAACAACAACTACTAC-------------------------TA---C------------T-------------------------------ACTACTCCCTGAA--C-------C-----------TGAA---------CCTGAACCTG-------------------------------ATA------TTCCCC----------------AAAAATAGAATCTAGACCAGAA---CATAAACCGCCTGCAAAAGTCCGCCTCCACATCGCA--SizeHit CountTotal NormTotal
No Reads
droBia1
AGTCTACCAGAATG--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGACGATC------------------------------------------------------G-AGGCTCTCCT----------------------------------------------------------------------------TT-AAGTA------CTCAAG------------------------------------------------------------T------A----------------------AAACCAGACC---AACCTAACA-C---CATTCTTCTCTTGC----TGCG-TACTCACCA-CAACA---------------------ACAA---C-------------------------TA---C------------T-------------------------------ACTCCTCCCTGAA--C-------C-----------TGAA--------ACCCGAAAATG-----------------------------------------TCCCC----------------CCGAATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCCGCCTCCACATCGCA--SizeHit CountTotal NormTotal
No Reads
droTak1
---CTACTGGAATGTGAA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG----------------TTT-------GGTGGGTGGGGACGAAC----------------CTCCAAAAGGTC--------------------------T----CTCTCTTTTAA--------------------------------------TCGTTAAATTTAGA-A--GCCTCCT----CCT--CC-AAGTATATATATTAA---------------------------------------------------------------------------------------------AAACAGACC---AACTTAACACC---AATTCTTCTCTTGC----TGCG-TACTCACAA-CTACA---------------------ACAACAAC-------------------------AA---C------------T-------------------------------ACTACTCCCTGAA--C-------C-----------TGAA-------------------------------AAATCCAA--CAAAACCCAAAACAAAAAA-------------------AAACAAATAGAAACTAGAACAGAA---CATAAATCGCCTGCAAAAGTCCGCCTCCACATCGCA--SizeHit CountTotal NormTotal
No Reads
droEle1
A-CATTCCGGAATG--AA-GATCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGAAT-C-----------------------------------------------GAAA-AAAAGAAAACA--------------------------------------------------------------------TACTCTATACT--CT-AAGTA------TTAAAAAAA----------------------------------------------------------------------------------ACCAACAAACAGACC---AACTTAACA-C---CATTCTTCTCTTGC----TGCG-TACTCACA--------------------------------------------------------------A---C------------T-------------------------------ACTCCTCCCTGAAAAC-------C-----------TG------------CTGAA----------------AA--------------------------ATCACT-------------AAAAAAAATAGAAACTAGAGCAGAA---TATAAACCGCCTGCAAAAGTCTGCCTCCACATCGCA--SizeHit CountTotal NormTotal
No Reads
droRho1
A-CCTACTGGAATG--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGGACGAAC------------------------------------------------------C-CAGATCTCTTTTAA--------------------------------------TCAAT--ATTTAGA-A--GCC----------T--CT-AAGTA------TTAAACAAAAAA-------------------------------------------------------------------------------AACAAAAAACAGACC---AACTTAACA-C---CATTCTTCTCTTGC----TGCG-TACTCACTA-CAACA---------------------ACAA---C-------------------------TA---C------------T-------------------------------ACTCCTCCCTGAA--C-------C-----------TGCA-----------------------------------------------------------ATCCCC----------------CCAAATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCCGCCTCCACATCGCA--SizeHit CountTotal NormTotal
No Reads
droFic1
AACCTGCTGGAGCG--AA-GAGCAGAATTCATGAAAAAC-TTTCCATGCTGTG---------------------------GTGGGTGGGG-CGATC------------------------------------------------------C-AAGCTCTCT-TTAA--------------------------------------TCGAT--ATTTAGA-A--GCC----------T--CT-AAGTA------TTCAAAAG----------------------------------------------------------C------A------------------------AACAAAAG-CAAACTTAACA-C---CATTCTTCTCTTGC----TGCG-TACTCACCA-CAACA---------------------ACAACAACA-------------------A---CTA---C-------CCAACA-------------------------------AC--TTCCCCGAA--T-------C-----------TGAA---------TCTGAATCTGAATCTGAATCTGAAATCGAAACCGAAACCCAACCGAATCAATCCCC-------------------AATAGAAACTAGAGCAGAA---CATAAACCGCCTGCAAAAGTCGGCCTCGACCTCGCA--SizeHit CountTotal NormTotal
No Reads
droKik1
A-TCTAAT----------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGTTGA--------------------------------------TTAGTGTATTTAGTAT--GCC----------TCTCT-AAGTA------TGCAA-------------------------------------------------------------------------------------------AAATCCGATCA-AAACTTAACA-C---AATTCTTCTCTTGC----TGCG-TACTCACAAACAACAACAA---------CTACAACTACAACAAC-------------------------AA---C------------T-------------------------------ACTCCTCCCTGAAAACAATCAAACAAAAAAATCCCTGAAATCCTGAAAAATGAA------------------------------AC-CAATCGAA------CAC----------------ACAAATAGAAACTAGAGCAGAACAACATAAATCGCCTGCAAAAGTCCGCCTCGACTTCGCA--SizeHit CountTotal NormTotal
No Reads
droAna3
G-C-AACGCGAATG--------CAGAATTCATGAAAGAC-TTTCCATGCTGTG----------------T---------GGTGGGAGGGGAT-CCTAGTCTAAAGTCCTAGAGTCCTAGAGGCC--------------------------T-AGGCTCTT-TCTAA--------------------------------------T-GAT--ATCTAGAAAACGCC----------T--CT-AAGTA------TGCA---------------------------------------------------------------------------------------------------ACC---GACTTAACA-C---ACTTCTTCTCTTGC----TGCG-TACTCACCAACAACAACAA---------CAACA---ACAACAAC----------------------AACTACAACCA--------------------------AACATCTACAACAACTACTACTCCCTGAA--T-------CCAAAAAATATGTTAAATCCTGAATCCTGAA--------------------------------------------ACCCCC--TGACAAAAAAAAAAAAAAACAGAAACAAGAACAGAA---CGCCAATCGCCTTCAAAAGTCCGCCTCCACATCCCA--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGTCCGCCTCCACATC.....2011.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACAGAAACAAGAA..............................................1811.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTCCGCCTCCACATC.....1811.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAACAGAAACAAGA...............................................2020.501010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---ACAACAAC----------------------AACTACAAC...................................................................................................................................................................................................................................21190.112020000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAA---------CAACA---ACAACAAC----------------------AACTACAAC...................................................................................................................................................................................................................................25110.091010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACAGAAACAAGAAA.............................................19200.051001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ACAA---------CAACA---ACAACAAC----------------------AACT........................................................................................................................................................................................................................................21200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---ACAACAAC----------------------AACTACAAC...................................................................................................................................................................................................................................20200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACAGA......................................................18200.051010000
droBip1
T-------TGAATG--------CAGAATTCATGAAAGAC-TTTCCATGCTGTG----------------T---------GGTGGGCGGGG----------------------------------------------------------------------TTCTAG--------------------------------------TC-------CTAGA-T--GAT----------A--C--------------------------------------------------------------------------------------------------------------CAACCGACC---AACTTAACA-C---AATTCTTCTCTTGC----TGCG-TACTCACCAACAACAACAA---------CA------ACAACAACT-------------------ACTACTACAAACAACCAACCAACA-------------------------------ACCCCCCCTTGAA------------------------AA-----------------------------------------------------------ACCCCCCTTGAT--------AAAAAAATAGAAACAAGAACAGAA---CGCGAATCGACTTCAAAAGTCCGCCTCGACATCCCA--SizeHit CountTotal NormTotal
No Reads
dp5
T-C----GCGAAG---------GAGAATTCATGAAAAAT-GTTACATGCTGTT---------------------------GTGGTGGGGCAT-A--------------------------------------------------------G-AA--TCTCCTCCTACTCCTACCCCTCCCCACTCCCACCCCCACCCCCACCCTTCGTC--CTTTAGAAT-CGCC----------T--CT-AAGTA------TGCAACA------------------------GAGACTGCAAGAACAA-AAACAACAACCAACAAAGT------A----------------------AAAAAACAAA---AACCTAACA-CACAAATTCTTCTCTTGC----GCTGCTACTCACAA-CAACA---------------------ACAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..C----GCGAAG---------GAGAATTCATGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
C-C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CAGCA---------------------ACAACAAC-------------------------TA---C------------T-------------------------------ACGGTTCCCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
A-CAAAAAGGAATGC-AA-GAGGAAAATTCATAAGAAATGTTTCCATGCTGTTGCAGCAATCTACTATTTTTT-TTCT---ATGGTGGGGA--------------------------------------------------------------------------------------------------------------------AT--ATTAATT-T--GCC----------TAGCTAAAGTA------ATGCAACA-----------------------GACAAAAAAAAAAAAAGACAAAATAATTAACACAAA------A----------------------AAATCAAAAC---AAAAAAATA-C-CAAATTCTTTTCTTGCGCGTTGCC-TACTTACCA-AACT----------------------GTAA-AACTGCCCCGAACTCCCCCTTTACCACCTAC-CACCACCAACCAACACCTCTGACCCTACCCAACCTCTATTCCAACTGC----------------------------------------------------------------------------------------------------------------------GACAACAGATACTAGATCAGGG---TATAAATCGCTTGCAAAAATCAGCCTCGACATCACA--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................C-TACTTACCA-AACT----------------------GTAA-AACTGCCCC............................................................................................................................................................................................................................................................2711.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGATCAGGG---TATAAAT...............................1911.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGG---TATAAATCGCTTGCAA......................1911.00101000
.................................AGAAATGTTTCCATGCTGTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AACTGCCCCGAACTCCC....................................................................................................................................................................................................................................................1811.00101000
droVir3
G-G--AATGCAATGCA-ATG-AGAGAATTCATGAAAAAC-TTTCCATGCGGTT----------------TTTT-TTCCA---------------------------------------------TA-CCTGGGTGCAGATAGCCA--------AA-----------------------------------------------------------------------------------ATAAAGTA------TTAAAAAAAAAAACAACAATTTAGCCTGTAG------------------------------------AACTGTAAAATGCAAGC-------------AAACA-AAA---AACCTAACAAC---AATTCTTCTCTTGC----GCTACTACTCACAA-CAACA---------------------ACAACGAC-------------------------AA---C------------A-------------------------------ACT---------------------------------------------------------------------------------------------------------------------GTAAACAGAAATTAGAACAAAA---CATAAACCGCTTACAAAAATCGGCATCCACATCGCA--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................ATTTAGCCTGTAG------------------------------------AACTGTAAAATGCA...............................................................................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000000000000000000000000010000000001000
droMoj3
G-G--AATGCAATGCA-ATG-AGAGAATTCATGAAAAAC-TTTCCATGCGGTT----------------TTTTTTTTCA---------------------------------------------TA-CCTGGGTGTAGATAGCCAAAAAAAAAAACA-ACTTAGAA--------------------------------------T---------------------------------GT-AG----------------------------------------------------------------------------AAATGTAAAATGCAAGTGAACAAAACCA--AAACAAACA-AAAACCTAACAAC---AATTCTTCTCTTGC----GCTGATACTCACAA-CAACA---------------------ACAACAAC-------------------------AA---C------------C-------------------------------ACAACATGTTAAA--C----------------------A-----------------------------------------------------------ACT-------------------GTAAACAGAAACTAGAACAAAA---CGTAAATCGCTTACAAAAATCCGCTTCCACTTCGCA--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................CTCACAA-CAACA---------------------ACAACAAC-------------------------AA---C------------C-------------------------------.......................................................................................................................................................................................2430.331100000
droGri2
G-G--AATGCAATGCA-ATC-AGAGAATTCATGAAAAAC-TTTCCATGCTACA--AGCGGTT-------TTTT-TT----------TGTTGT-A------------------------------TACCCTGGGC----------AAGAAAC-AA---------------------------------------------------------ATTTAGA------C----------T--GT-AG----------------------------------------------------------------------------AAATGTA--ATGC------------------AACCG--A---AACCTAACAAC---AATTCTTCTCTTGC----GCTGTTACTCACAA-CTACAACAATTATTTGTACAACAACAACAACGAC-------------------------AA---C------------C-------------------------------ACATCTACATGAA--C----------------------A-----------------------------------------------------------ACT-------------------GTAAACAGAAATTAGAACAAAA---CGTAAATCGCTTACAAAAATCCGCTTCCACCTCGCATGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:42 AM