ID:

dsi_18454

 Coordinate:

3r:19677954-19678103 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.6 -29.5 -29.5

Flybase annnotation

CDS [3r_19678104_19678163_+]; exon [3r_19678104_19678163_+]; intron [3r_19677707_19678103_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTGAATTGTGGATTTGCTGGGGCCACGTGAATATATAGTCCATAAAAAAAAAAAGAGAAAAACATGAAAAAAGAAATGGAATCATAGGGATGCCCCCGCGACGTCATCGTCGACGTCACGGAGTGCAAGTGATAAGAGTCAAACATGCATGCATATATATTTACACCCGTCTCTATATACGTACACCTTTCGATTTCCAGGTTTTGCCGCGTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTT
**********************************************************************..((((.((.......(((...)))(((.((((((......)))))).))).(((((..((((....))))....)))))((.((((((...((....))...)))))).))...)))))).....****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O001
Testis
 O002
Head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
....................................................................................................................................................................................................................................GAAACGAGCATGAGCAGACCT. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................ATATACGTACACCTTTCGATTT...................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCCGCGTCGTCTCGATTGG.......................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TCTCGATTGGCAGGGAAA.................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCGTCTCGATTGGCAGGGAAAC................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................AAGAAATGGAATCATAGGGAT............................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................TATAGTCTATAAAAAAAAAAA.................................................................................................................................................................................................... 21 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................TAGTACATAAAAATAAAAAGA.................................................................................................................................................................................................. 21 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................GGTTTGTCGCGTCGTC.................................. 16 2 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0
.................................TATAGTCGTTAAAAAAAAAAAAA.................................................................................................................................................................................................. 23 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................TATAGAATCCATAAAAAAA........................................................................................................................................................................................................ 19 2 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.....TTGTAGATTTTCTGGTGCCA................................................................................................................................................................................................................................. 20 3 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................GACTGCGAGTGATAAGA................................................................................................................. 17 2 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................AAAAAAAAAAGAGAAAAA............................................................................................................................................................................................ 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................CGTCGTCATCGTCGAGGTC..................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
............................................AAAAAAAAAAGAGAAA.............................................................................................................................................................................................. 16 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................AGAAGAGAAAGACATGAA...................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................AAAAAAAAAAGAGAAAA............................................................................................................................................................................................. 17 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GACTTAACACCTAAACGACCCCGGTGCACTTATATATCAGGTATTTTTTTTTTTCTCTTTTTGTACTTTTTTCTTTACCTTAGTATCCCTACGGGGGCGCTGCAGTAGCAGCTGCAGTGCCTCACGTTCACTATTCTCAGTTTGTACGTACGTATATATAAATGTGGGCAGAGATATATGCATGTGGAAAGCTAAAGGTCCAAAACGGCGCAGCAGAGCTAACCGTCCCTTTGCTCGTACTCGTCTGGAA
******************************************************..((((.((.......(((...)))(((.((((((......)))))).))).(((((..((((....))))....)))))((.((((((...((....))...)))))).))...)))))).....********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
............................................................................................................CAGCTGCAGTGCCTCACGTTC......................................................................................................................... 21 0 1 4.00 4 3 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCCCTTTGCTCGTACTCGTCT.... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................TACGGGGGCGCTGCAGTA............................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0
......................................................................................................CAGTAGCAGCTGCAGTGCCTC............................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................TCAGGTATTTTTTTTTTTCT.................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................AGCTGCAGTGCCTCACGTTCA........................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................................................CAGCTGCAGTGCCTCACGTTCA........................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..........CTAAACGACCCCGGTGCACTT........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.......................GTGCACTTATATATCAGGTA............................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................CCCCTTTGCTCGTACTCGTCT.... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CGGTCCCTTTGCTGGTAC.......... 18 2 9 0.67 6 3 3 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCCCTTTGCTGGTACTCAAC..... 20 3 7 0.57 4 4 0 0 0 0 0 0 0 0
...................................................................................................................................TACTCTGAGTTTGTCCGTACG.................................................................................................. 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................GTCCCTTTGCTGGTACTCAAC..... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................CCTGCTGCAGTGCCTCAC............................................................................................................................. 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0
...............................................................................................GGCGCTGCAGTAGAAG........................................................................................................................................... 16 1 4 0.25 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................CAGTCCCTTTGCTGGTAC.......... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0
..........................................................................................................AGCAGCGGCGGTGCCTCCCG............................................................................................................................ 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0
................................................................ACGTTTTTCTTTACCTTTGT...................................................................................................................................................................... 20 2 9 0.11 1 0 0 0 0 0 0 0 1 0
..........................................................................................................AGCAGCGGCTGTGCCTCCCG............................................................................................................................ 20 3 10 0.10 1 0 0 0 0 0 0 0 1 0
.............................................................................................AGGGCGCTGCAGTAGAA............................................................................................................................................ 17 2 15 0.07 1 0 0 0 0 0 0 0 0 1
................................................................................................GCGCTGCAGTAGCTG........................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:19677904-19678153 + dsi_18454 CTGAATTGT----------------GGATTTGCTGGGG-----CCACGTGAATATATA---------------------GTCCATAA-----------------------------------------------------------------A-A-AAAAAAAGAGAA-----------------AAACATGAAAAAAGAAATG----GAA-TC-A---TAGG------------------------------GA----------TGCCCCCGCGACGTCAT---CGT---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAAGA-GTCA--------------A------------A------CATGCATGC----A--TA------TATATTTACACCCGTCTCTATATA--C----GT-ACACC----------TTTCG-ATTTC-CAGGTTTTGCCGCGTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTT
droSec2 scaffold_0:20484085-20484332 + CTGAATTGT----------------GGATTTGCTGGGG-----CCACGTGAATATATA---------------------GTCCATAA-----------------------------------------------------------------A-A-A--AAAAGAGAA-----------------AAACATGAAAAAAGAAATG----GAA-TC-A---TAGG------------------------------GA----------TGCTCCCGCGACGTCAT---CGT---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAAGA-GTCA--------------A------------A------CATGCATGC----A--TA------TATATTTACACCCGTCTCTATATA--C----GT-ACACC----------TTTCA-ATTCC-CAGGTTTTGCCGCGTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTT
dm3 chr3R:20145539-20145788 + CTGAATTGT----------------GGATTTGCTGGGG-----CCACGTGAATATATA---------------------GTCCATTA-----------------------------------------------------------------A-A-AAAAGAAGAGAA-----------------AAACATGAAAAAAGAAATG----GAA-TC-A---TAGG------------------------------GA----------TGCCCCCGCGACGTCAT---CGT---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAAGA-GTCA--------------T------------A------CATGCATGC----A--TA------TATATTTACACCCGTCTATATATA--C----GT-ACACC----------TTTCG-ATTCC-CAGGTTTTGCCGCGTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTT
droEre2 scaffold_4820:7914947-7915189 - CTGAATTGT----------------GGATTTGCTGGGG-----CCACGTGAATATATA---------------------GTCCATCC-----------------------------------------------------------------A-A-T---AAAGCGAA-----------------GAACACGAAAAAAGAAATG----GAA-TC-A---TAGG------------------------------GA----------TGCCCCCGCGACGTCAT---CGT---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAAGA-GTCA--------------T------------A------CATGCAT------A--TA------TATATTTACACACGTCTATATATA--------T-ACACC----------TTTTG-ATTCC-CAGGTTTTGCCGCGTCGCCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTT
droYak3 3R:26359899-26360149 - CTGAATTGT----------------GGATTTGCTGGGG-----CCACGTGAATATATA---------------------GTCCATCC-----------------------------------------------------------------A-A-AA-AAAAGCGAA-----------------AAACATGAAAAAAGAATTG----GAA-TC-A---TAGG------------------------------GA----------TGC-CCCGCGACGTCAT---CGT---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAAGA-GTCA--------------T------------A------CATGCATACAAACA--TA------TATATTTACACACGTCTATATATA--------TACCACC----------TTTTG-ATTCC-CAGGTTTTGCCGCGTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTT
droEug1 scf7180000409798:235128-235366 - CTGAATTGT----------------GGGTTTGCTGGGG-----CCACGGGA---TATA---------------------GTCCATCC-----------------------------------------------------------------A-A-----AAAGAGA-----C----AAAAAAAT--AC-----------------A-AAA-TC-A---TAGG------------------------------GA----------TGC-CCCGCGACGTCAT---CGC---------------CGACGTCAC--------G-----------GAGTGCA--ACTGATAACA-GCCC--------------GTC----AT----A------TA--CA----TATATATCTACATGCAT----ACATCTATCTATATATA--------T-ACACC----------TTTTGTATTCC-CAGGTTTTGCCGCGTCGGCTCGATTGGCAGGGAAATGAGCATGAACAAACCTT
droBia1 scf7180000302136:506883-507144 + CTGAATTGT----------------GGGCTTGTTGGGG-----CCACGGGA---TA------------T--AGTC-ATAGTCCGTCC-----------------------------------------------------------------A-T-AA--AAAGAGA-----C----AAAAAAAAAAAC-------------------AAA-TC-A---TAGG------------------------------GA----------TGC-CCCGCGACGTCAT---CGG---------------CGACGTCAC--------G-----------GAGTGCACTAGTGATAAGA-GCCC--------------CTCGCACAGACACACACACACACACACAC----A--CG------CATATGTACACCCGTCTATATATA-------AC-GCACC----------TTTCG-ATTCC-CAGGTTTTGCCGCGTCGTCTCGATTGGCTGGGGAACGAGCATGAACAGACCTT
droTak1 scf7180000415769:2286424-2286678 - CTGAATTGT----------------GGGCTTGCTGGGG-----CCACGGGA---TA------------T--AGTC-ATAGTCCGTCC-----------------------------------------------------------------A-A-----AAAGAGA--CGA-------AAAAAAAAACA---G--------------AAA-TC-A---TAGG------------------------------GA----------TGCCCCCGCGACGTCAT---CGG---------------CGACGTCAC--------G-----------GAGTGCACAAGTGATAACA-GCCA--------------GTCGCATATAT--A------CATACATAC----A--TA------CATATATACCGCAGTCTATATATA-------AC-ACACC----------TTTCG-ATTCC-CAGGTTCTGCCGCGTCGCCTCGATTGGCAGGGAAACGAGCATGAACAGACCTT
droEle1 scf7180000491008:457739-457983 + CTGAATTGT----------------GGGTTTGCTTGGG-----CCACGGGA---TA------------T--AGTCTGTAGTCCGTCC-----------------------------------------------------------------A-A-----AAAGAGAA-----------------AAACA---G------------AA--A-TTAA---TAGG------------------------------GA----------TGCCCCCGCGACGTCAT---CGA---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAACA-GGCA--------------GTC-TATAT----------------ATACAAACATATGTACA---AT----ACATATATATATATATA----TATAT-TC-CC----------ATTCC-ATTTC-CAGGTCTTGCCGCGTCGCCTCGACTGGCAGGGAAATGAGCATGAACAGACCTT
droRho1 scf7180000779477:248644-248866 + CTGAATTGT----------------GGGTTGGCTGGGG-----CCACGGGA---TA------------T--AGTCTGTAGTCCGTCC-----------------------------------------------------------------A-A-----AAAGAGA--A-------AAAA-CAACAACA---AA--------------------A---AAGG------------------------------GA----------TACCCCCGCAACGTCAT---CGA---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAACAAGGCA--------------GTC-TGTAT------------ATACATAC----A--TA------TATA----------------------------T-TC-CC----------ATTCC-ATTTC-CAGGTCTTGCCGCGTCGCCTCGACTGGCAGGGAAATGAGCATGAACAGACCTT
droFic1 scf7180000453912:1320210-1320442 + CTGAATTGT----------------GGGTTTGCTGGGG-----CCACGGGA---TATA---------------------GTCCGTCC-----------------------------------------------------------------A-A-----AAAGAGA--AAAC----A--------------ACAAAAACACTA----AAA-AC-A---TAGG------------------------------GA----------TGC-CCCGCTACGTCAT---CGA---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAACA-GCCA--------------GTC------------------------------A--TA------TATATTGCCC----TCTATACCTATATGAATGT-TCCCA----------TTCCA-ATCCC-CAGGTTTTGCCGCGTCGCCTCGATTGGCAGGGAAACGAGCATGCACAGACCTT
droKik1 scf7180000302387:35355-35609 + CTGAATT-T----------------GG------TCTGG-----CCACGGGA---TA------------C--GGT---TCGTCTGTCCAAGAGTAG----------------------GTA-----------------------GCGCCGGC----GAAAAAAAAAGTA-----------------AAACA---AAAAAG----------------A---AAGG------------------------------GA----------TGC-CCCGCGACGTCAT---CAT---------------AAACGTCAT--------A-----------GAGTGCA--AGTGATAACA-CCTA--------------C------------A------AACGAACGC----A--CACACATGCATACGTA-------CTATACATA--T----AT-TCTCCCTCCCCTCCTAT--C-GCCCG-CAGGTTCTGCCCCGTCGCATTGATTGGCTGGGGAATGAGCATGAACAGACCTT
droAna3 scaffold_13088:184137-184278 + CTGAGACGT----------------GGG---------------------G-----ATA--------------GTCCATCGTCCGTC--------------------------TG------------------GCCCTGGTCTGGCGCTGAC---------TAGGTAA--AAAGTCTA--AAAAAA--------------------AAA--A-TCGG---AAGG------------------------------GA----------TGC-CCCACTACGTCATTATCAT---------------AAGCGTCAT-TGATTG-G-----------GAATGCA--AGTGATAACA-G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396413:238398-238539 + CTGAGACGT----------------GGG---------------------------ATA--------------GTCCATCGTCCGTC--------------------------TG------------------GCCCTGGTCTACCGCTGAG---------TAGGTGA--AAAGTCTA--AAAAAA-------------------AAAA--ATTT-C---AAGG------------------------------GA----------TGC-CCCACTACGTCACAGTCAT---------------AAGCGTCAT-TGATTG-G-----------AAATGCA--AGTGATAACA-G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 2:18667490-18667776 - CTATACTGAGAACTGAAACCATAGTCCGCTAGCTT---TTGGGCCCCGGGA---T--AGCCCGCCCGAT--AGTC-------------------------------------TGCCTG----------------GTCTGTCCG---CTTGC----TAA--A--------------------AAAT-------------------AAGA--A-TTGT---CGGTGACGTTGTA----------------------------------GTCCCCCCTGCCCCGT---TGACTACGTCATTGTT-TCGATGTTCGTCAGCGCAGCAAGCAGGCAGCGGTGCA--AGTGATAACA-GCTCACATTCCCTTCTCC----------------------------------------------------CCA---------C------------------CTCTTCTACCTTT---CTCCA-CAGGTTCTGCCGCGACGCATTGACTGGCTGGGAAATGAGCATCAGCAGACCTT
droPer2 scaffold_3:1397667-1397948 - CTGACAACT-----GAAACCATAGTCCGCTAGCTT---TTGGGCCCCGGGG---T--AGCCCGCCCGAT--AGTC-------------------------------------TGCCTG----------------GTCTGTCCG---CTTGC----TAA--A--------------------AAAG-------------------AAGA--A-TTGT---CGGTGACGTTGTA----------------------------------GTCCTCCCTGCCCCGT---TGACTACGTCATTGTT-TCGATGTTCGTCAGCGCAGCAAGCAGGCAGCGGTGCA--AGTGATAACA-GCTCATATTCCCTTCTCC----------------------------------------------------CCA---------C------------------CTCTTCTACCTTT---CTCCA-CAGGTTCTGCCGCGACGCATTGACTGGCTGGGAAATGAGCATCAGCAGACCTT
droWil2 scf2_1100000004943:7153589-7153862 - CTGGCAAGT----------------GAATTTTTCAGTG-----GCTGGTGGTCATATG---------------------GT------------AGTCAGTCTGTCT---GTCTG------------------TCGTCTGTCTGCCGTTTAATAAT-AA--AAAG----TAGGT----AAAA-------CAACAAAAAC------------A-TTGCGGCTGATGACGTAGTA-----------------GGTAGATTCCCACTTCACCCCCCGCAGCTGTAC---CAT---------------TAATGACA-------------------------TCC--AGTGATAACA-TTTC-TATTGTCTTCCCC----------------------------------------------------CTA---------C------------------CCCGTTT--CTT--T-ATGTATTAGGTATTGCCCCGACGCATTGACTGGCTGGGAAATGAGCATGAACAGACCTT
droVir3 scaffold_13047:3476128-3476391 + CTGAAAC-T----------------GAA------CTGA-----ATTCGCAT---AA------------C--GGT---GCGACAGTATGGGAGAAGTCCGTCTGTCTACTGTCTGTCCGTACCG---------TCGTCTGTCCG---CATAA----TAA--AAG-----TAGGT----AAAAA------------------------AA-------A---TAGG-----------CTCCCGGCTGTGACG----GA----------AGCGACGGCGACGTCAT---TAT------------T-TTGGTGCCCA--------GC----------AAGTGCA--AGTGATAACA-AAT--------------------------------------------------------------TTTGACTGC---------------------------CGCTTCTTCCTT--C-GCCCA-CAGGTACTGCCCCGGCGCATTGACTGGCTGGGCAATGAACATGAGCAGACCTT
droMoj3 scaffold_6540:20487378-20487612 + CTGAATCGT----------------ATA---------------------------A------------C--------------GTACGGGAGAAGTCCGTCTGTC-------T----GTACCG---------CCGTTTGTCCG---CTTAG----TAA--AAG-----TAGGT----AAAAA----------------------------------------------AGTAGGCTCCCGGCTGTGGCGGGCAGA----------AGCAACGGCGACGTCAT---TAT------------T-TTGATGCCCA--------GC----------AAGTGCA--AGTGATAACA-AAT-----------------------------------TTTGA---------------------------ATGC---------------------------CGCTTCTTCTAT--A-ACCCC-CAGGTACTGCCCCGACGCATTGACTGGCTGGGCAATGAGCATGAACAGACATT
droGri2 scaffold_14906:134730-135003 + CTGAAATTG------AAAC----------TGAA-CTGA-----AT-CGCAT---AG------------CGCGGT---GCGGCAGTATG---GAAGTCCGTATGTC-------TGTCCGTATCGTAGCGTCTACCGTCTGTCTG---CTTAA----TAA--AAG-----TAGGT----AAAAAGAAATACA---A---------------AA-AT-G---TAGG------------------------------------------CTC-CCTGCGACGTCAT---TAT------------TCTCGATGCCCC--------GC----------AAGTGCA--AGTGATAACG-AAT----------------------------------------------------------------TTTTGTTTGTCTCTCCCCT--C----GC-CCGCC----------CACCC-ACACA-CAGGTACTGCCGAGGCGCATCGACTGGCTGGGAAATGAGCATGACCAGACCTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTGAATTGT----------------GGATTTGCTGGGG-----CCACGTGAATATATA---------------------GTCCATAA-----------------------------------------------------------------A-A-AAAAAAAGAGAA-----------------AAACATGAAAAAAGAAATG----GAA-TC-A---TAGG------------------------------GA----------TGCCCCCGCGACGTCAT---CGT---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAAGA-GTCA--------------A------------A------CATGCATGC----A--TA------TATATTTACACCCGTCTCTATATA--C----GT-ACACC----------TTTCG-ATTTC-CAGGTTTTGCCGCGTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGAGCATGAGCAGACCT.2111.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATA--C----GT-ACACC----------TTTCG-ATTT.......................................................2211.00100000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCGTCGTCTCGATTGG..........................1911.00110000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGATTGGCAGGGAAA..................1811.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCTCGATTGGCAGGGAAAC.................2211.00100000100000000000
....................................................................................................................................................................................................AAGAAATG----GAA-TC-A---TAGG------------------------------GA----------T......................................................................................................................................................................................................................................................................2111.00110000000000000000
......................................................................................A-----------------------------------------------------------------A-A-AAAAAAAGAGAA-----------------AAA....................................................................................................................................................................................................................................................................................................................................................18200.05100000000000001000
......................................................................................A-----------------------------------------------------------------A-A-AAAAAAAGAGAA-----------------A......................................................................................................................................................................................................................................................................................................................................................16200.05100000000000010000
......................................................................................A-----------------------------------------------------------------A-A-AAAAAAAGAGAA-----------------AA.....................................................................................................................................................................................................................................................................................................................................................17200.05100000010000000000
droSec2
CTGAATTGT----------------GGATTTGCTGGGG-----CCACGTGAATATATA---------------------GTCCATAA-----------------------------------------------------------------A-A-A--AAAAGAGAA-----------------AAACATGAAAAAAGAAATG----GAA-TC-A---TAGG------------------------------GA----------TGCTCCCGCGACGTCAT---CGT---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAAGA-GTCA--------------A------------A------CATGCATGC----A--TA------TATATTTACACCCGTCTCTATATA--C----GT-ACACC----------TTTCA-ATTCC-CAGGTTTTGCCGCGTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................T---CGT---------------CGACGTCAC--------G-----------GAGTGCA--...........................................................................................................................................................................................2112.0020200
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGCGTCGTCTCGATTGG..........................2111.0010010
........................................................................................................................................................................................................................................................................................AT---CGT---------------CGACGTCAC--------G-----------GAGTGC..............................................................................................................................................................................................2111.0010001
dm3
CTGAATTGT----------------GGATTTGCTGGGG-----CCACGTGAATATATA---------------------GTCCATTA-----------------------------------------------------------------A-A-AAAAGAAGAGAA-----------------AAACATGAAAAAAGAAATG----GAA-TC-A---TAGG------------------------------GA----------TGCCCCCGCGACGTCAT---CGT---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAAGA-GTCA--------------T------------A------CATGCATGC----A--TA------TATATTTACACCCGTCTATATATA--C----GT-ACACC----------TTTCG-ATTCC-CAGGTTTTGCCGCGTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A--C----GT-ACACC----------TTTCG-ATTC.......................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................GAGTGCA--AGTGATAAGA-G...............................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010000000000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCCGCGTCGTCTCGATTGGCA........................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................A-TC-A---TAGG------------------------------GA----------TGCCCCCGCGACG..........................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA--C----GT-ACACC----------TTTCG-ATTCC-CA...................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CTGGGG-----CCACGTGAATATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AT---CGT---------------CGACGTCAC--------G-----------GAGTGC..............................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCTCGATTGGCAGGGAAACGAGC.............2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCTCGATTGGCAGGGAAG..................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA--C----GT-ACACC----------TTTCG-ATTCC-CAG..................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-ACACC----------TTTCG-ATTCC-CAGG.................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
...........................................................................................................................................................................................................................TAGG------------------------------GA----------TGCCCCCGCGACGTC........................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................AATG----GAA-TC-A---TAGG------------------------------GA----------TGCCC..................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
...AATTGT----------------GGATTTGCTGGGG-----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................................................................................................................................................AGG------------------------------GA----------TGCCCCCGCGACGTCA.......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................ATTTGCTGGGG-----CCACGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAACGAGCATGAGCAGACCT.2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATA--C----GT-ACACC----------TTTCG-ATTCC-CAG..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATTGT----------------GGATTTGCTGGGG-----CCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.....................................................................................................................................................................................................AGAAATG----GAA-TC-A---TAGG------------------------------GA----------.......................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................ATAAGA-GTCA--------------T------------A------CATGCATGC----.............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCTCGATTGGCAGGGAAACG................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................GAAATG----GAA-TC-A---TAGG------------------------------GA----------TG.....................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTGT----------------GGATTTGCTGGGG-----CCACGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-CAGGTTTTGCCGCGTCGTCT.................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCGTCGTCTCGATTG...........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AAGA-GTCA--------------T------------A------CATGCATG..................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AT---CGT---------------CGACGTCAC--------G-----------GAGTGCA--AGTG.......................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATA--C----GT-ACACC----------TTTCG-ATTCC-CAG..................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................ATGAAAAAAGAAATG----GAA-TC-A---TAGG------------------------------G..................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGCCGCGTCGTCTCGATTGGC.........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGTCTCGATTGGCAGG......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCGTCTATATATA--C----GT-ACACC----------T................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGCGTCGTCTCGATTGG..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................ATG----GAA-TC-A---TAGG------------------------------GA----------TGCCCC.................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGGGAAACGAGCATGAGCA......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GAATTGT----------------GGATTTGCTGGGG-----C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAGCATGAGCAGACCT.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CGACGTCAC--------G-----------GAGTGCA--AGTG.......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCGTCGTCTCGATTGGC.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCTCGATTGGCAGGGA....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGCCGCGTCGTCTCGATTGGCA........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCTCGATTGGCAGGG.....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGATTGGCAGGGAAACGAGC.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCGTCGTCTCGATTGGCAGGG.....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGATTGGCAGGGAAACG................2011.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GCTGGGG-----CCACGTGAATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGAATTGT----------------GGATTTGCTGGGG-----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTCGTCTCGATTGGCAGGGAAACGA...............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ACACC----------TTTCG-ATTCC-CAGGT................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTCGTCTCGATTGGCAGGGAAAC.................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................AGAAATG----GAA-TC-A---TAGG------------------------------GA----------TGCCCC.................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................................................................................................................................................................AT---CGT---------------CGACGTCAC--------G-----------GAG.................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................T---CGT---------------CGACGTCAC--------G-----------GAGTGC..............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-CAGGTTTTGCCGCGTCGTCT.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTGT----------------GGATTTGCTGGGG-----CCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCTCGATTGGCAGGGAAACGAGC.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCGCGTCGTCTCGATTGGC.........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCCGCGTCGTCTCGATTG...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCCGCGTCGTCTCGATTGGCAGGG.....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCGTCGTCTCGATT............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GT----------------GGATTTGCTGGGG-----CCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.........................................................A---------------------GTCCATTA-----------------------------------------------------------------A-A-AAAAGAA.............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................AATG----GAA-TC-A---TAGG------------------------------GA----------TGCCCCC................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGATTGGCAGGGAAAC.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GACGTCAC--------G-----------GAGTGCA--AGTGAT.....................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGAAACGAGCATGAGCAGA....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-CAGGTTTTGCCGCGTCGTC..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................GAAATG----GAA-TC-A---TAGG------------------------------GA----------.......................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
......................................................................................A-----------------------------------------------------------------A-A-AAAAGAAGAGAA-----------------AAA....................................................................................................................................................................................................................................................................................................................................................1880.3830000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................ATTA-----------------------------------------------------------------A-A-AAAAGAAGAGAA-----------------AG.....................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................A-----------------------------------------------------------------A-A-AAAAGAAGAGAA-----------------AAACA..................................................................................................................................................................................................................................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
droEre2
CTGAATTGT----------------GGATTTGCTGGGG-----CCACGTGAATATATA---------------------GTCCATCC-----------------------------------------------------------------A-A-T---AAAGCGAA-----------------GAACACGAAAAAAGAAATG----GAA-TC-A---TAGG------------------------------GA----------TGCCCCCGCGACGTCAT---CGT---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAAGA-GTCA--------------T------------A------CATGCAT------A--TA------TATATTTACACACGTCTATATATA--------T-ACACC----------TTTTG-ATTCC-CAGGTTTTGCCGCGTCGCCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGCGTCGCCTCGATTGG..........................2111.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGATTGGCAGGGAAACGAGCATG..........2511.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCGCCTCGATTGGCAGGGA....................2211.0010001000
.......................................................................................................................................................................................................................A---TAGG------------------------------GA----------TGCCCCCGCGACGTC........................................................................................................................................................................................................................................................2211.0010000010
droYak3
CTGAATTGT----------------GGATTTGCTGGGG-----CCACGTGAATATATA---------------------GTCCATCC-----------------------------------------------------------------A-A-AA-AAAAGCGAA-----------------AAACATGAAAAAAGAATTG----GAA-TC-A---TAGG------------------------------GA----------TGC-CCCGCGACGTCAT---CGT---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAAGA-GTCA--------------T------------A------CATGCATACAAACA--TA------TATATTTACACACGTCTATATATA--------TACCACC----------TTTTG-ATTCC-CAGGTTTTGCCGCGTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................CA--AGTGATAAGA-GTCA--------------T------------A------CATG......................................................................................................................................2211.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCTCGATTGGCAGG......................1811.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCTCGATTGGCAGGGAAACGAGC.............2711.00100000010000
droEug1
CTGAATTGT----------------GGGTTTGCTGGGG-----CCACGGGA---TATA---------------------GTCCATCC-----------------------------------------------------------------A-A-----AAAGAGA-----C----AAAAAAAT--AC-----------------A-AAA-TC-A---TAGG------------------------------GA----------TGC-CCCGCGACGTCAT---CGC---------------CGACGTCAC--------G-----------GAGTGCA--ACTGATAACA-GCCC--------------GTC----AT----A------TA--CA----TATATATCTACATGCAT----ACATCTATCTATATATA--------T-ACACC----------TTTTGTATTCC-CAGGTTTTGCCGCGTCGGCTCGATTGGCAGGGAAATGAGCATGAACAAACCTTSizeHit CountTotal NormTotal
No Reads
droBia1
CTGAATTGT----------------GGGCTTGTTGGGG-----CCACGGGA---TA------------T--AGTC-ATAGTCCGTCC-----------------------------------------------------------------A-T-AA--AAAGAGA-----C----AAAAAAAAAAAC-------------------AAA-TC-A---TAGG------------------------------GA----------TGC-CCCGCGACGTCAT---CGG---------------CGACGTCAC--------G-----------GAGTGCACTAGTGATAAGA-GCCC--------------CTCGCACAGACACACACACACACACACAC----A--CG------CATATGTACACCCGTCTATATATA-------AC-GCACC----------TTTCG-ATTCC-CAGGTTTTGCCGCGTCGTCTCGATTGGCTGGGGAACGAGCATGAACAGACCTTSizeHit CountTotal NormTotal
No Reads
droTak1
CTGAATTGT----------------GGGCTTGCTGGGG-----CCACGGGA---TA------------T--AGTC-ATAGTCCGTCC-----------------------------------------------------------------A-A-----AAAGAGA--CGA-------AAAAAAAAACA---G--------------AAA-TC-A---TAGG------------------------------GA----------TGCCCCCGCGACGTCAT---CGG---------------CGACGTCAC--------G-----------GAGTGCACAAGTGATAACA-GCCA--------------GTCGCATATAT--A------CATACATAC----A--TA------CATATATACCGCAGTCTATATATA-------AC-ACACC----------TTTCG-ATTCC-CAGGTTCTGCCGCGTCGCCTCGATTGGCAGGGAAACGAGCATGAACAGACCTTSizeHit CountTotal NormTotal
No Reads
droEle1
CTGAATTGT----------------GGGTTTGCTTGGG-----CCACGGGA---TA------------T--AGTCTGTAGTCCGTCC-----------------------------------------------------------------A-A-----AAAGAGAA-----------------AAACA---G------------AA--A-TTAA---TAGG------------------------------GA----------TGCCCCCGCGACGTCAT---CGA---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAACA-GGCA--------------GTC-TATAT----------------ATACAAACATATGTACA---AT----ACATATATATATATATA----TATAT-TC-CC----------ATTCC-ATTTC-CAGGTCTTGCCGCGTCGCCTCGACTGGCAGGGAAATGAGCATGAACAGACCTTSizeHit CountTotal NormTotal
No Reads
droRho1
CTGAATTGT----------------GGGTTGGCTGGGG-----CCACGGGA---TA------------T--AGTCTGTAGTCCGTCC-----------------------------------------------------------------A-A-----AAAGAGA--A-------AAAA-CAACAACA---AA--------------------A---AAGG------------------------------GA----------TACCCCCGCAACGTCAT---CGA---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAACAAGGCA--------------GTC-TGTAT------------ATACATAC----A--TA------TATA----------------------------T-TC-CC----------ATTCC-ATTTC-CAGGTCTTGCCGCGTCGCCTCGACTGGCAGGGAAATGAGCATGAACAGACCTTSizeHit CountTotal NormTotal
No Reads
droFic1
CTGAATTGT----------------GGGTTTGCTGGGG-----CCACGGGA---TATA---------------------GTCCGTCC-----------------------------------------------------------------A-A-----AAAGAGA--AAAC----A--------------ACAAAAACACTA----AAA-AC-A---TAGG------------------------------GA----------TGC-CCCGCTACGTCAT---CGA---------------CGACGTCAC--------G-----------GAGTGCA--AGTGATAACA-GCCA--------------GTC------------------------------A--TA------TATATTGCCC----TCTATACCTATATGAATGT-TCCCA----------TTCCA-ATCCC-CAGGTTTTGCCGCGTCGCCTCGATTGGCAGGGAAACGAGCATGCACAGACCTTSizeHit CountTotal NormTotal
No Reads
droKik1
CTGAATT-T----------------GG------TCTGG-----CCACGGGA---TA------------C--GGT---TCGTCTGTCCAAGAGTAG----------------------GTA-----------------------GCGCCGGC----GAAAAAAAAAGTA-----------------AAACA---AAAAAG----------------A---AAGG------------------------------GA----------TGC-CCCGCGACGTCAT---CAT---------------AAACGTCAT--------A-----------GAGTGCA--AGTGATAACA-CCTA--------------C------------A------AACGAACGC----A--CACACATGCATACGTA-------CTATACATA--T----AT-TCTCCCTCCCCTCCTAT--C-GCCCG-CAGGTTCTGCCCCGTCGCATTGATTGGCTGGGGAATGAGCATGAACAGACCTTSizeHit CountTotal NormTotal
No Reads
droAna3
CTGAGACGT----------------GGG---------------------G-----ATA--------------GTCCATCGTCCGTC--------------------------TG------------------GCCCTGGTCTGGCGCTGAC---------TAGGTAA--AAAGTCTA--AAAAAA--------------------AAA--A-TCGG---AAGG------------------------------GA----------TGC-CCCACTACGTCATTATCAT---------------AAGCGTCAT-TGATTG-G-----------GAATGCA--AGTGATAACA-G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................G-----ATA--------------GTCCATCGTCCGTC--------------------------TG------------------GCCCTG......................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droBip1
CTGAGACGT----------------GGG---------------------------ATA--------------GTCCATCGTCCGTC--------------------------TG------------------GCCCTGGTCTACCGCTGAG---------TAGGTGA--AAAGTCTA--AAAAAA-------------------AAAA--ATTT-C---AAGG------------------------------GA----------TGC-CCCACTACGTCACAGTCAT---------------AAGCGTCAT-TGATTG-G-----------AAATGCA--AGTGATAACA-G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CTATACTGAGAACTGAAACCATAGTCCGCTAGCTT---TTGGGCCCCGGGA---T--AGCCCGCCCGAT--AGTC-------------------------------------TGCCTG----------------GTCTGTCCG---CTTGC----TAA--A--------------------AAAT-------------------AAGA--A-TTGT---CGGTGACGTTGTA----------------------------------GTCCCCCCTGCCCCGT---TGACTACGTCATTGTT-TCGATGTTCGTCAGCGCAGCAAGCAGGCAGCGGTGCA--AGTGATAACA-GCTCACATTCCCTTCTCC----------------------------------------------------CCA---------C------------------CTCTTCTACCTTT---CTCCA-CAGGTTCTGCCGCGACGCATTGACTGGCTGGGAAATGAGCATCAGCAGACCTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................GT---CGGTGACGTTGTA----------------------------------GTCCCC................................................................................................................................................................................................................................................................2112.0020101000000
...............................................................CCCGAT--AGTC-------------------------------------TGCCTG----------------GTCT......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAGCATCAGCAGACCTT2111.0010100000000
....................................................................................................................................................................................................................................TGTA----------------------------------GTCCCCCCTGCCCCGT---T..................................................................................................................................................................................................................................................2111.0010100000000
...................................................................AT--AGTC-------------------------------------TGCCTG----------------GTCTGTCCG---..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTCTGCCGCGACGCATTG...............................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---CTCCA-CAGGTTCTGCCGCG.......................................2211.0010100000000
............................CTAGCTT---TTGGGCCCCGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................................................................................................................TTGT---CGGTGACGTTGTA----------------------------------GTC...................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
CTGACAACT-----GAAACCATAGTCCGCTAGCTT---TTGGGCCCCGGGG---T--AGCCCGCCCGAT--AGTC-------------------------------------TGCCTG----------------GTCTGTCCG---CTTGC----TAA--A--------------------AAAG-------------------AAGA--A-TTGT---CGGTGACGTTGTA----------------------------------GTCCTCCCTGCCCCGT---TGACTACGTCATTGTT-TCGATGTTCGTCAGCGCAGCAAGCAGGCAGCGGTGCA--AGTGATAACA-GCTCATATTCCCTTCTCC----------------------------------------------------CCA---------C------------------CTCTTCTACCTTT---CTCCA-CAGGTTCTGCCGCGACGCATTGACTGGCTGGGAAATGAGCATCAGCAGACCTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................TCTGTCCG---CTTGC----TAA--A--------------------AAAG-------------------....................................................................................................................................................................................................................................................................................................................................2113.003300000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACTGGCTGGGAAATGAGC.............2112.002000002
..........................................................GCCCGCCCGAT--AGTC-------------------------------------TGCCTG----------------GT........................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCATTGACTGGCTGGGA....................2011.001000001
....................................................................................................................................................................................................................................................................................................................................................................ATATTCCCTTCTCC----------------------------------------------------CCA---------C------------------CTC........................................................................2111.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGACGCATTGACTGGCT........................1911.001100000
..........................................................................................................................................................................................................................................................................................................GTT-TCGATGTTCGTCAGCGCA................................................................................................................................................................................................................2111.001100000
.......................................................................................................................................................................................AG-------------------AAGA--A-TTGT---CGGTGACGTT...........................................................................................................................................................................................................................................................................................................2111.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATTGACTGGCTGGGA....................1911.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCTGGGAAATGAGCATCAGC.......2511.001000001
................................................................................................................TGCCTG----------------GTCTGTCCG---CTTGC----.....................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..............................AGCTT---TTGGGCCCCGGGG---G--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.051010000
droWil2
CTGGCAAGT----------------GAATTTTTCAGTG-----GCTGGTGGTCATATG---------------------GT------------AGTCAGTCTGTCT---GTCTG------------------TCGTCTGTCTGCCGTTTAATAAT-AA--AAAG----TAGGT----AAAA-------CAACAAAAAC------------A-TTGCGGCTGATGACGTAGTA-----------------GGTAGATTCCCACTTCACCCCCCGCAGCTGTAC---CAT---------------TAATGACA-------------------------TCC--AGTGATAACA-TTTC-TATTGTCTTCCCC----------------------------------------------------CTA---------C------------------CCCGTTT--CTT--T-ATGTATTAGGTATTGCCCCGACGCATTGACTGGCTGGGAAATGAGCATGAACAGACCTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCTGGGAAATGAGC.............1912.00200020
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGACGCATTGACTGGCTG.......................2011.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCCCGACGCATTGACTG...........................2111.00110000
..................................................GTCATATG---------------------GT------------AGTCAGTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
droVir3
CTGAAAC-T----------------GAA------CTGA-----ATTCGCAT---AA------------C--GGT---GCGACAGTATGGGAGAAGTCCGTCTGTCTACTGTCTGTCCGTACCG---------TCGTCTGTCCG---CATAA----TAA--AAG-----TAGGT----AAAAA------------------------AA-------A---TAGG-----------CTCCCGGCTGTGACG----GA----------AGCGACGGCGACGTCAT---TAT------------T-TTGGTGCCCA--------GC----------AAGTGCA--AGTGATAACA-AAT--------------------------------------------------------------TTTGACTGC---------------------------CGCTTCTTCCTT--C-GCCCA-CAGGTACTGCCCCGGCGCATTGACTGGCTGGGCAATGAACATGAGCAGACCTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................TACTGTCTGTCCGTACCG---------TCGTC.......................................................................................................................................................................................................................................................................................................................................................................................................2313.003100000000000000000000001000000000000000000000000100000000000000
.........................................................................................................TACTGTCTGTCCGTACCG---------TCG.........................................................................................................................................................................................................................................................................................................................................................................................................2113.003001010000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................GCTGTGACG----GA----------AGCGACGGCGA............................................................................................................................................................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................ACTGTCTGTCCGTACCG---------TCGT........................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TACTGTCTGTCCGTACCG---------TCGTT.......................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................TACTGTCTGTCCGTACCG---------TCGT........................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
....................................................................................................................................................................................................................................................TGACG----GA----------AGCGACGGCGACGT.........................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCCCCGGCGCATTGACTG...........................2111.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................TACTGTCTGTCCGTACCG---------TCGTCT......................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGC---------------------------CGCTTCTTCCTT--C-GC.........................................................2011.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................CTACTGTCTGTCCGTACCG---------TC..........................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................ACG----GA----------AGCGACGGCGACGTCA.......................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................A---TAGG-----------CTCCCGGCTGTGACG----GT----------.......................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................ACA-AAT--------------------------------------------------------------TTTGACTGC---------------------------CGCTTC.....................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TACTGTCTGTCCGTACCG---------TCGTCTA.....................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAACATGAGCAGACCTT2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TACTGTCTGTCCGTACCG---------TCGTCA......................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000100000000000000000000000000000000000000
droMoj3
CTGAATCGT----------------ATA---------------------------A------------C--------------GTACGGGAGAAGTCCGTCTGTC-------T----GTACCG---------CCGTTTGTCCG---CTTAG----TAA--AAG-----TAGGT----AAAAA----------------------------------------------AGTAGGCTCCCGGCTGTGGCGGGCAGA----------AGCAACGGCGACGTCAT---TAT------------T-TTGATGCCCA--------GC----------AAGTGCA--AGTGATAACA-AAT-----------------------------------TTTGA---------------------------ATGC---------------------------CGCTTCTTCTAT--A-ACCCC-CAGGTACTGCCCCGACGCATTGACTGGCTGGGCAATGAGCATGAACAGACATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................T------------T-TTGATGCCCA--------GC----------AAGTGC..............................................................................................................................................................................................2011.001000010
droGri2
CTGAAATTG------AAAC----------TGAA-CTGA-----AT-CGCAT---AG------------CGCGGT---GCGGCAGTATG---GAAGTCCGTATGTC-------TGTCCGTATCGTAGCGTCTACCGTCTGTCTG---CTTAA----TAA--AAG-----TAGGT----AAAAAGAAATACA---A---------------AA-AT-G---TAGG------------------------------------------CTC-CCTGCGACGTCAT---TAT------------TCTCGATGCCCC--------GC----------AAGTGCA--AGTGATAACG-AAT----------------------------------------------------------------TTTTGTTTGTCTCTCCCCT--C----GC-CCGCC----------CACCC-ACACA-CAGGTACTGCCGAGGCGCATCGACTGGCTGGGAAATGAGCATGACCAGACCTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:42 PM