ID:

dsi_18449

 Coordinate:

2l:9994213-9994458 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-49.1 -49.1 -49.1

Flybase annnotation

exon [2l_9994459_9994641_+]; CDS [2l_9994459_9994641_+]; exon [2l_9993744_9994212_+]; CDS [2l_9993744_9994212_+]; intron [2l_9994213_9994458_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCCCGTCATCTTGATAACAGCGAATCTGAAAACCTTTGGTATATATAATGTAAGTTATCTGGTGACTATGTAGCTAAATATCCATACAGATAATTAATTTAGTCTGTTTTACAACCTAAAACTAAATTAACACCTTAATTCTGCTTACACGATAAGGGCTTCCTATCTGAAAGATTGTGGCCTTTATCTAAGTGGTTCAAGTGGTTTATAATTCTCGGCAATGATTTGAAAGGTCAAAAGAGCTTTTCTGAAGTAGATTTACTTCTAATCATAATTATTCTGTTTTAATTTCAAGGATTACCCAGTGAATGCTGATGCTGCAGTTTTGCTGGTGCTGATGGAGTT
**************************************************....(((((((((((..(((........)))..))).))))))))(((((((((.................)))))))))..(((......(((((((...((((((((((....((((...))))...))))))))))))))))).......)))..........(((.(((((((.(((((.((....)).)))))..((((((....)))))).......)))))))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M025
embryo
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
.................................................................................................................................................................TCCTATCTGAAAGATTGTG...................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................GTTTTGCTGGTGCTGATGGAGTT 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................AGCGAATCTGAAAACCTTTGGTAT............................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..........CTTGATAACAGCGAATCTGAAAACC....................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TGCTGATGCTGCAGTTCTGCTGGT............ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........ATCTTGATAACAGCGAATCTGAAAACC....................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................GTTTTGCTAGTGCTGATGGA... 20 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................CAGTTTTGCTGGTGCTGATG..... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................TCTGAAAGATTGTGGCCTTTAT.............................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
..............ATAACAGCGAATCTGAAAACCTTTGGT................................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TCTCAAGTGGATTTACTTCT............................................................................... 20 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................ATTTGAAAGGTCAAAAGAGCC..................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AAGGGCTTCCTCTCTGCAGGA........................................................................................................................................................................... 21 3 4 0.50 2 0 0 0 0 0 0 0 0 0 2
.......................................................................................................................................................................................................................TCGTCAATGATTGGAAAGGAC.............................................................................................................. 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................ATTCGAAAGGTCAAGAGA........................................................................................................ 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................TCTGTTCGACACCCTAAAAC............................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................TTGTTCAAGTGGTTTAGA....................................................................................................................................... 18 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................GCTTTGCTGGTGCTGATGGT... 20 2 10 0.10 1 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

AAGGGCAGTAGAACTATTGTCGCTTAGACTTTTGGAAACCATATATATTACATTCAATAGACCACTGATACATCGATTTATAGGTATGTCTATTAATTAAATCAGACAAAATGTTGGATTTTGATTTAATTGTGGAATTAAGACGAATGTGCTATTCCCGAAGGATAGACTTTCTAACACCGGAAATAGATTCACCAAGTTCACCAAATATTAAGAGCCGTTACTAAACTTTCCAGTTTTCTCGAAAAGACTTCATCTAAATGAAGATTAGTATTAATAAGACAAAATTAAAGTTCCTAATGGGTCACTTACGACTACGACGTCAAAACGACCACGACTACCTCAA
**************************************************....(((((((((((..(((........)))..))).))))))))(((((((((.................)))))))))..(((......(((((((...((((((((((....((((...))))...))))))))))))))))).......)))..........(((.(((((((.(((((.((....)).)))))..((((((....)))))).......)))))))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
...............................................................................................................................................................................................................................................................................................TTAAAGTTTCTAATGGGCC........................................ 19 2 2 1.50 3 2 1 0 0 0 0 0
....GCAGTAGGACTATTGTCGC................................................................................................................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0
....GCAGTAGAACTATTGTCGCTT................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................AAAGTTTCTAATGGG.......................................... 15 1 13 0.38 5 0 1 0 0 4 0 0
......................................................................................................................................................................................................................................................................................AAGACAAAATTGTAGGTCCTA............................................... 21 3 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................TTAAAGTTTCTAATGGG.......................................... 17 1 4 0.25 1 0 1 0 0 0 0 0
............ACTGTTGCCGCTGAGACTTTT......................................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................................TTAAAGTTTCTAATGGGC......................................... 18 2 8 0.25 2 0 1 0 0 1 0 0
...........................................................................................................AAAATGTTAGATTTTGATAT........................................................................................................................................................................................................................... 20 2 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................TTTAAAGTTTCTAATGGGCC........................................ 20 3 11 0.18 2 0 2 0 0 0 0 0
................................................................................................................................................................................................................................................................................................TAAAGTTTCTAATGGGC......................................... 17 2 20 0.15 3 0 3 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................AAAGTTTCTAATGGGCC........................................ 17 2 14 0.14 2 0 2 0 0 0 0 0
................................................................................................................................................................................................CACCAAGTTCTGCAAGTAT....................................................................................................................................... 19 3 15 0.13 2 0 0 2 0 0 0 0
..................................................................................GGTATGTCTATTAAG......................................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 1
...........................................................................................................................................................................TTCTAACACCGGGAA................................................................................................................................................................ 15 1 11 0.09 1 0 0 0 0 0 1 0
..................................................................................................................................................................................................CCAAGTTAACCAACTAGTAA.................................................................................................................................... 20 3 16 0.06 1 0 0 1 0 0 0 0
...............................................................................................................................................CGGATGTGCTATTCTC........................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................TTCGAGTTTTCTCGA..................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:9994163-9994508 + dsi_18449 TT-CCCGTCATCTTGATAACAGCGAATCTGAAAACCTTTGGTATATATAATGTAAGTTA-TCTGGTGAC-TATGTAGCTAAATATCCATACAG---AT---AATTA-------ATTT-----------------------------------------------------------------------------------------------------------------------------------------AGTCT--G-TTTTACAACC-TA------AAACT--------------------------------------------AAATTA----------------------------------------------------------ACAC-----------------------------CT-TAAT--TCTGCTTACACGATAAGGG-CTTCCTATCTGAAAGATTGTGGCCTTTATCTAAGTG-----G-TTCAAGTGGTT-TATAATTCT--CGG--CAATGATTTGAAAGGTC-AAAAGAGCTTTTCTGAAGTAGATTTAC-------------------------------TTCTAATCA---------------------------------------------TAA---------------TTATTCTGT-TTTAATTTCAAGGATTACCCAGTGAATGCTGATGCTGCAGTTTTGCTGGTGCTGATGGAGTT
droSec2 scaffold_3:5741118-5741466 + TT-CCCGTCATCTTGATAACAGCGAATCTGAAAACCTTTGGTATATATAATGTAAGTAA-TCTGGTGAC-TTTGTAGCTAAATATCCATACAG---AT---GATTA-------ATTT-----------------------------------------------------------------------------------------------------------------------------------------AGTCTAAG-TTTTACAACC-TA------AAACT--------------------------------------------AAATTA----------------------------------------------------------ACAC-----------------------------CT-TAAT--TCTGCTTACAAGATATGGG-CTTCCTATCTGAAAGATTGTGGCCTTTATCTAAGTG-----G-TTCAAGTGGTTTTATGATTCT--CGG--CACTGATTTTAAAGGTC-AAAAGAGCTTATCTGAAGTAGATTCAC-------------------------------TTCTAATCA---------------------------------------------TAA---------------TTATTCTGT-CTTAATTTGAAGGATTACCCAGTGAATGCCGATGCTGCAGTTTTGCTGGTGCTGATGGAGTT
dm3 chr2L:10315908-10316241 + TC-CCCGTCATCTTGATAACCGCGAATCTGAAAACCTTTGGTATATATAATGTAAGTAA-TCTGGTGAC-TGAGTAG-------------------AT---GAATA-------ATTT-----------------------------------------------------------------------------------------------------------------------------------------AGTCTCTGATTTTGCAACC-TA------AAACT--------------------------------------------AAAATA----------------------------------------------------------ACAC-----------------------------CA-TAAT--TCTGCTTACAAGATAAGGG-CTTCTTATCTGAAAGATTGTGGCCTTTATCTAAGTG-----G-TTCAAGTGGATTTATGATTCT--CGG--CAATGATTTGAAAGGTC-AAAAGAGCTTATCTGAAGTAGATTCAC-------------------------------TTATAATCA---------------------------------------------TAA---------------TTATTTTGT-CTTAAATTCAAGGATTATCCGGTGAATGCTGATGCTGCAGTTTTGCTGGTGCTGATGGAGTT
droEre2 scaffold_4929:10922899-10923319 + TT-CCCGTCATCTTAATAACCGCGAATCTGAAAACCTTTGGTATATATAATGTAAGTAA-TTTTGTGAC-TCAGTAGCTAAATTTCCGTGGAG---AT---GAATT-------ATTTT---------------------------TACG--------------TTTTTATCGGAAAATAAT---------------A-----CAAGAGGAAT--------------------------TTGAAAAAAAAAATTTTTTCTTAG-TTATCAAAGC-TAAAAAGTAAACT-------------------------------ACAATAACACGT-------TG-GG--------------------TATCACCATA-----AC-------------TTAAAAG-----------------------------TTTTA--TTTCTGCTTTCAAGATAAGAG-CTTCCTATCTAAAAGATTGTGGCCTTTATCAAAGTG-----G-TTCAAGTGGTTTTGTGATTTT--AGG--CAATCATTTG--AGGTC-AAAAGAGCTGATCTGAAGTAAATGCAC-------------------------------ATC-----------------------------------------------------A---------------TTATTATGT-CTTAATTTCTAGGATTACCCGGTGAATGCCGATGCTGCAGTTTTGCTGGTACTGATGGAGTT
droYak3 2L:12994533-12994951 + TT-CCCGTCATCTTGATAACCGCGAATCTGAAAACCTTTGGTATATATAATGTAAGTAA-TTTTGTGAC-TCAGG-----------------G---AT---GATAA-------ATTTGC---------------------------ATG--------------TTTTTATCGGAAACTAAA---------------A-----AAAGAGCTAT--------------------------C---------AAACTT-----TAG-TTTTTAAAGCGTTAAAGGTAAACTTAACAAACT----------------------AACATAACACGCT------GGT-----------------------ATCACCTTAACATAAC-------------TGAAAAA-----------------------------TTTAA--TTTCTGCTTACAAGATAAGAG-CTCACTATCTAAAAGATTATCGCCTTTATCTAAATG-----G-TTCAAGTGGTTTTCTAATGCT--AGG--CAATGATTTGAAAGGTC-AA-AAAGCTTATCTGAAGTAAATGCAGTAAATGAAG-------------------------TAATCA---------------------------------------------AAA---------------TTATGATGT-TTTAACTTCTAGGATTACCCGGTGAATGCTGATGCTGCAGTTTTGCTGGTGCTGATGGAGTT
droEug1 scf7180000409554:4603532-4603985 - TT-CCCGTCATCCTAATAACCGCGAATCTGAAAACTTTTGGGATATACAATGTAAGTGA-TTTTATATTAT----------------------ACCGGA------------------T------------------TACATCTATAACGGTTTTAATTTTAAAAGGTCATATAAAACAAAAAAATGGTTG------------------------------------------------------------------------------------------GTAAAATTCACGAAATAAAAAAATCGTCAAACAAGTTAAGAATTACACGT-------GGGTTTGTAGACCACAGAGAATACG------GGGA-----AC-------------TTATAAG-----------------------------T---AATTATTTGCTTACAAAATAGAAA-CTACTTATCTGAAAGATTATGGTCTTTATCTAACATTG-TAT-TTCAAGTGGTCTGGTGA-ACT--GGA--CTATAATTTAA---GTT-A-AGTTGCTTATCTATAGAAAATACAT-------------------------------ATCGAAACAAGG----TGTAATTTTATT---TTACATGTGTAA-----------------TC------GTTTA-----TA--TTTTGTTTATAGGATTATCCAGTGAATGCTGATGCCGCCGTTTTACTTGTGCTAATGGAACT
droBia1 scf7180000302422:8223127-8223540 + TT-CCCGTCATCTTGATAACCGCAAATCTGAAAACCTTTGGAATATATAATGTAAGTAG-ACTTTTCAA-TA--------------------AACGCAACTTTT-------------------------TTATAAAAAAA-----------------------------------------------TCGGCTAGGATCATCAAAAAGTTCTTACTTGAAGATTCTTCCACTTTGTAAC---------GTACTC-----TT-------ACACATTTTT----------------------------------AAAAAAGGCACTACACGT-------GGT-----------------------ATTAACTCAAAATA--------------------------------------------------------------TGTCTGTGTGATAAGAC-TTCCCTATCTGAAAGTTTATGATCTTTATCTAAGTTTT-TCTTTTAAAGTAGTTTCATGTTTCT--ATA--CATTTAATTAAAAGCTA-CAAACAGATTATCTACAATCAA-----------------------------------------------------------A---------------TATTTCATGTGATATAA-CA-TT------A---TATTTCTCTCTCAATCATTAAGGATTATCCACTAAATGCTGATGCTGCCGTTCTGCTGGTGCTGATGGAACT
droTak1 scf7180000415438:528264-528735 + TT-CCTGTCATCTTGATCACCGCGAATCTGAAAACTTTTGGAATATATAATGTAAGTAA-TGTTATCTTCTA--------------------AACTTTACTTTTCA-------CTTTTAATTCATTTCATTTTAATATTATCTGCTACG-----------------------------------------------------------TTTT--------------------------T---------TAATTT-----TT-------ATTTATTTAAAAGTAAATTA-----------------------------AACAATTACACGT-------GGAGG--------------------TAACACCTTAACATAAT-------------TCAAGAAGTACAAATAAACGCATTTGTACAAATAAAC-GCA--TTTGTACTTCAAAGATAAGGGCCTTCCTATCTATAAGATGATAATCTTTATCTAAGCT-----T-TTAGTTTGGTTTTATGATTATTATGA--CTATTATTTAAGAGGTC-AAGAGTTGTTATCTATAGCATGT--AT-------------------------------CTCTAAACAAAAAA--AGTAA---TGTTTTATAAAA----------TGTCATACTATTT-TT------G---GTTTTCTCT--CTGAATCGTAGGACTATCCAGTGAATGCTGATGCTGCCGTTTTACTGGTGCTTATGGAACT
droEle1 scf7180000491186:3408181-3408422 + CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGATAAGAA-CTCTTTATCTGAAAGATTACGGTCTTGATCTAACTTTGGTTTTTCAAGGTTATTTCATAAACCT--AAAAAAAAAGATTTACTGGGTC-CAAAGTGGTTGTCTATAGTAAATACAA-------------------------------ATCGTAACAAAA----AGCAACTATGTTT---------------TACGAAATGTAT-TA-AT------G---TTTTCCTTTATCAACTTTTTAGGATTACCCGGTTAATGCAGATGCAGCCGTTTTGTTGGTGCTCATAGAACT
droRho1 scf7180000766254:13759-14211 - TC-CCCGTCATATTAATAACCGCAAATCTAAAAACATTTGGAATATATAATGTAAGGCGTTATGCT-----TAAA-----------------A---AA---TATTA-------TTTTAG---------------------------ATA--------------CGTTTATATAAAATTAAAGTAATGTAGGTTAGGA-----AAAACGCTTT--------------------------C---------AAACTT-----TT-------ATATCTTGAT----------------------------------AAGTAAAAGATTACACGT-------GGCCG--------------------TAACAACTTAACATAAT-------------TCAAGAC-----------------------------CA-TAAATCTTTGCTTTCACGATAAGAT-TTCCCTATCTGAAAGACTATGGTCTTTGATAAACTG-----A-T---ATTAGCTCCATGATTCT--AAA--CAATGCCATACTAGTTA-TAAAGTGCTTGTTTATCGTAAATGCAC-------------------------------ATCTTAACAAAAAG--AGAAATTATGTTTTGGGAATAGTTATTTTTTGTAATATAC-TCATT------GTT-------TATCTTATATTTTTAGGATTATCCTGTTAATGCTGATGCTGCCGTTTTATTGGTGCTCATAGAACT
droFic1 scf7180000453838:547992-548343 + TT-CCCGTCATCTTAATAACCGCGAATCTAAAAACCTTTGGAATCTATAATGTAAGTAC-TTTTAT--------TAGCTTAAAATCCGTAATG---AG---AAATCAC--------------------------------------------------------------CCAAAAATAAT---------------A-----C------------------------------------------------------ATGTCA----CTTACC-TA------AAAAG--------------------------------------------ACATTA----------------------------------------------------------------------------------------------GCAT--TCACTTTACAAGATAAGAG-CTCCTTATCTGAAAGCTCATTATGATTATCTAACCGATTTTTTATCAGGCGGTTCAGTGATTTT--AGA--TAACGTTTTAAGAGGTC-AAAAGATGCTATTTATAGTATTA-------------------------------------------------------AGGG---------------CTTTTTATGTAATACAAA---------------TTTT--TCTTTTATCTCTTAAGGATTACCCGGAGAACGCCGATGCTGCTGTTTTACTGATGCTCATTGAGCT
droKik1 scf7180000302472:3020105-3020164 - TA-CCCGTCATTCTTATAACAGCTAACCTGAAAACGTTTGGCATATACAATGTAAGTTG-CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12916:14149069-14149201 + ---------------------------------ACTTTTGGCATATATAATGTGAGTAT-TCAAA------GAATAG-------------------TT---TTTTA-------ATTT-----------------------------------------------------------------------------------------------------------------------------------------AAATACTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCAAGG---------TCTTTTATTTGATTAGGATTATCCGTTGAATGCAGATGCTGCTGTTTTATTTGCACTTGTTGAATT
droBip1 scf7180000396572:2811046-2811167 - A----------------------------------------------TAATGTGAGTAT-TCAAA------G------------------------AA---AAAATATTTTAAATTA---------------------------------------------------------------A---------------A-----C------------------------------------------------------AACTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCC---------------------------------------------TT-------------CT-------TGTTTTATTTGATTAGGATTATCCGTTGAATGCTGATGCTGCTGTTTTATTAGCACTTGTTGAATT
dp5 Unknown_group_3:15644-15983 + TA-CCAGTAATATTGATAACGGCAACTCTCAAAACATTTGGTGTATTTAATGTAAGTAT-TATGCTATTTT----------------------TTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT-----------------------GTCACCTCAGCATATTAGCCATAACCTTCTGAAGGAATACA-------GCTATTG-CCCAACACA----------AACTTTG----------------------------------------------------------------------------------------C-TTGAAATGACAA-AATAATCTGCAAGAAGCCAACGTAGTTTATATTGTATTTATATTATTAGTCCGTGTTCTTTCACATACAATATATTATTCTATT---CGACTTGGTCTTTCTTTTTATTAGC-TAATTTGAATGGCT-------TG--TTTTATTTTCAGGACTATCCCGTGAATGCTGATGTAACAGTCTTACTGGCACTCATAGAAAT
droPer2 scaffold_1:1293794-1294134 + TA-CCAGTAATATTGATAACGGCAACTCTCAAAACATTTGGTGTATTTAATGTAAGTAT-TATGCAATTTT----------------------TTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT-----------------------GTCACCTCAGCATATTAGCCATAACCTTCTGAAGGAATACA-------GCTATTGTCCCAACACA----------AACTTTG----------------------------------------------------------------------------------------C-TTGAAATGACAA-AATAATCTGCAAGAAGCCAACGTAGTTTATATTGTATTTATATTATTAGTCCGTGTTCTTTCACATACAATATATTATTCTATT---CGACTTGGTCTTTCTTTTTATTAGC-TAATTTGAATGGCT-------TG--TTTTATTTTCAGGACTATCCCGTGAATGCTGATGTAACAGTCTTACTGGCACTCATAGAAAT
droWil2 scf2_1100000004968:2663667-2663734 - AA-TTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTTTTGTAGGATTACCCGTTGAATGCCGATGCAGCTGTGCTTATGATACTAATGGAGAT
droVir3 scaffold_12728:141331-141411 + AA-TCAT--------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA---------------TTATTATAT-TTTTTTTTTCAGGATTATCCCTTAAATGCTGATTCCGCGGTGTTAATGGCACTTATAGAAAT
droMoj3 scaffold_6500:30434737-30434795 + TTACCTCTTATTTTGATCACAGCCAATTTGAAGACATTTGGCATAATTAATGTAAGTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15126:7664732-7664845 - TT-AAAATAACTCC---------------------------------------------------------TCATAAATAAATAAATACATAA---GC---AATGA-------ATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-----------------------------------------------------------------------------------------------------------------TCA-TTTTTTTTTTAGGATTATCCATTAAATGCTGATGCCGCAGTTTTGATGTCACTTATAGAAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TT-CCCGTCATCTTGATAACAGCGAATCTGAAAACCTTTGGTATATATAATGTAAGTTA-TCTGGTGAC-TATGTAGCTAAATATCCATACAG---AT---AATTA-------ATTT-----------------------------------------------------------------------------------------------------------------------------------------AGTCT--G-TTTTACAACC-TA------AAACT--------------------------------------------AAATTA----------------------------------------------------------ACAC-----------------------------CT-TAAT--TCTGCTTACACGATAAGGG-CTTCCTATCTGAAAGATTGTGGCCTTTATCTAAGTG-----G-TTCAAGTGGTT-TATAATTCT--CGG--CAATGATTTGAAAGGTC-AAAAGAGCTTTTCTGAAGTAGATTTAC-------------------------------TTCTAATCA---------------------------------------------TAA---------------TTATTCTGT-TTTAATTTCAAGGATTACCCAGTGAATGCTGATGCTGCAGTTTTGCTGGTGCTGATGGAGTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATCTGAAAGATTGTG..............................................................................................................................................................................................................................................................................1911.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTGGTGCTGATGGAGTT2311.00100010000000000000
....................AGCGAATCTGAAAACCTTTGGTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
...........CTTGATAACAGCGAATCTGAAAACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.........ATCTTGATAACAGCGAATCTGAAAACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTTTGCTGGTGCTGATG.....2011.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAAAGATTGTGGCCTTTAT......................................................................................................................................................................................................................................................................2211.00100000000000010000
...............ATAACAGCGAATCTGAAAACCTTTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAAAGGTC-AAAAGAGCC.................................................................................................................................................................................................2111.00110000000000000000
droSec2
TT-CCCGTCATCTTGATAACAGCGAATCTGAAAACCTTTGGTATATATAATGTAAGTAA-TCTGGTGAC-TTTGTAGCTAAATATCCATACAG---AT---GATTA-------ATTT-----------------------------------------------------------------------------------------------------------------------------------------AGTCTAAG-TTTTACAACC-TA------AAACT--------------------------------------------AAATTA----------------------------------------------------------ACAC-----------------------------CT-TAAT--TCTGCTTACAAGATATGGG-CTTCCTATCTGAAAGATTGTGGCCTTTATCTAAGTG-----G-TTCAAGTGGTTTTATGATTCT--CGG--CACTGATTTTAAAGGTC-AAAAGAGCTTATCTGAAGTAGATTCAC-------------------------------TTCTAATCA---------------------------------------------TAA---------------TTATTCTGT-CTTAATTTGAAGGATTACCCAGTGAATGCCGATGCTGCAGTTTTGCTGGTGCTGATGGAGTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAGATTGTGGCCTTT........................................................................................................................................................................................................................................................................1911.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGG-CTTCCTATCTGAAAGATTGT...............................................................................................................................................................................................................................................................................2711.0010010
.......................................................................................ATACAG---AT---GATTA-------ATTT-----------------------------------------------------------------------------------------------------------------------------------------AGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.........................................................................................ACAG---AT---GATTA-------ATTT-----------------------------------------------------------------------------------------------------------------------------------------AGTCTAAG-T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGCTGATGGAGTT1911.0010010
dm3
TC-CCCGTCATCTTGATAACCGCGAATCTGAAAACCTTTGGTATATATAATGTAAGTAA-TCTGGTGAC-TGAGTAG-------------------AT---GAATA-------ATTT-----------------------------------------------------------------------------------------------------------------------------------------AGTCTCTGATTTTGCAACC-TA------AAACT--------------------------------------------AAAATA----------------------------------------------------------ACAC-----------------------------CA-TAAT--TCTGCTTACAAGATAAGGG-CTTCTTATCTGAAAGATTGTGGCCTTTATCTAAGTG-----G-TTCAAGTGGATTTATGATTCT--CGG--CAATGATTTGAAAGGTC-AAAAGAGCTTATCTGAAGTAGATTCAC-------------------------------TTATAATCA---------------------------------------------TAA---------------TTATTTTGT-CTTAAATTCAAGGATTATCCGGTGAATGCTGATGCTGCAGTTTTGCTGGTGCTGATGGAGTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCGGTGAATGCTGATGCTGCAGT.....................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001100000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000020000000
................TAACCGCGAATCTGAAAACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGTGAATGCTGATGCTGCAGT.....................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATCCGGTGAATGCTGATGCT..........................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTTTTGCTGGTGCTGATGGAGT.2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATGCTGCAGTTTTGCTGGTGC..........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TTGATAACCGCGAATCTGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGCTGATGGAGT.1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCGGTGAATGCTGATGCT..........................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCTGATGCTGCAGTT....................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TAACCGCGAATCTGAAAACCTTTGGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGTGAATGCTGATGCTGCAGT.....................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGTGAATGCTGATGCTGCAGTT....................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTG-----G-TTCAAGTGGATTTAA.........................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TCTTGATAACCGCGAATCTGAAAACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TTGATAACCGCGAATCTGAAAACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CGCGAATCTGAAAACCTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TCTTGATAACCGCGAATCTGAAAACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCCGGTGAATGCTGATGCTGCAGT.....................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTTTGCTGGTGCTGATGGA...2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TTCAAGTGGATTTATGAT......................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGTGAATGCTGATGCTGCAGTTTT..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATCTGAAGTAGATTCAC-------------------------------TTATA...........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.C-CCCGTCATCTTGATAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGCAGTTTTGCTGGTGCT.........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT--CGG--CAATGATTTGAAAG..............................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCGGTGAATGCTGATGCTGCAGTT....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ACCGCGAATCTGAAAACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TTGATAACCGCGAATCTGAAAACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCCGGTGAATGCTG...............................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTTTTGCTGGTGCTGATG.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGATTCT--CGG--CAATGATTTGAAAG..............................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
TC-CCCGTCATCTTGATAACCGCGAATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATGCTGCAGTTTTGCTGG.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGTGAATGCTGATGC...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGTGAATGCTGATGCT..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCGGTGAATGCTGATGCTGCA.......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATTCT--CGG--CAATGATTTG..................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTGGTGCTGATG.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGGTGCTGATGGAGT.1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCTGGTGCTGATGGAGT.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGTGAATGCTGATGCTGCAGTTT...................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.C-CCCGTCATCTTGATAACCGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ATCTTGATAACCGCGAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ATAACCGCGAATCTGAAAACCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
..........TCTTGATAACCGCGAATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATGCTGATGCTGC........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGTGAATGCTGATGCTGC........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................GTAAGTAA-TCTGGTGAC-TGAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGCTGATGGAGTT1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCGGTGAATGCTGATGC...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAAAGGTC-AAAAGAGCTTATCT............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TCATCTTGATAACCGCGAATCTGAAAACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTC-AAAAGAGCTTATCT............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTTATCTGAAGTAG.....................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATGCTGATGCTGCAGT.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CTTGATAACCGCGAATCTGAAAACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCGGTGAATGCTGATGCT..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTGCTGGTGCTGATGG....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTTTGCTGGTGCTGATGGAGT.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GTCATCTTGATAACCGCGAATCTGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CTTGATAACCGCGAATCTGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTTTGCTGGTGCTGA.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCTGGTGCTGATGGT...1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TT-CCCGTCATCTTAATAACCGCGAATCTGAAAACCTTTGGTATATATAATGTAAGTAA-TTTTGTGAC-TCAGTAGCTAAATTTCCGTGGAG---AT---GAATT-------ATTTT---------------------------TACG--------------TTTTTATCGGAAAATAAT---------------A-----CAAGAGGAAT--------------------------TTGAAAAAAAAAATTTTTTCTTAG-TTATCAAAGC-TAAAAAGTAAACT-------------------------------ACAATAACACGT-------TG-GG--------------------TATCACCATA-----AC-------------TTAAAAG-----------------------------TTTTA--TTTCTGCTTTCAAGATAAGAG-CTTCCTATCTAAAAGATTGTGGCCTTTATCAAAGTG-----G-TTCAAGTGGTTTTGTGATTTT--AGG--CAATCATTTG--AGGTC-AAAAGAGCTGATCTGAAGTAAATGCAC-------------------------------ATC-----------------------------------------------------A---------------TTATTATGT-CTTAATTTCTAGGATTACCCGGTGAATGCCGATGCTGCAGTTTTGCTGGTACTGATGGAGTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGCTGCAGTTTTGC................1811.0010000010
droYak3
TT-CCCGTCATCTTGATAACCGCGAATCTGAAAACCTTTGGTATATATAATGTAAGTAA-TTTTGTGAC-TCAGG-----------------G---AT---GATAA-------ATTTGC---------------------------ATG--------------TTTTTATCGGAAACTAAA---------------A-----AAAGAGCTAT--------------------------C---------AAACTT-----TAG-TTTTTAAAGCGTTAAAGGTAAACTTAACAAACT----------------------AACATAACACGCT------GGT-----------------------ATCACCTTAACATAAC-------------TGAAAAA-----------------------------TTTAA--TTTCTGCTTACAAGATAAGAG-CTCACTATCTAAAAGATTATCGCCTTTATCTAAATG-----G-TTCAAGTGGTTTTCTAATGCT--AGG--CAATGATTTGAAAGGTC-AA-AAAGCTTATCTGAAGTAAATGCAGTAAATGAAG-------------------------TAATCA---------------------------------------------AAA---------------TTATGATGT-TTTAACTTCTAGGATTACCCGGTGAATGCTGATGCTGCAGTTTTGCTGGTGCTGATGGAGTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCGGTGAATGCTGATGCTGCA.......................2411.00101000000000
.................AACCGCGAATCTGAAAACCTTTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.....................GCGAATCTGAAAACCTTTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGCAGTTTTGCTGGTGCTGATGG....2711.00101000000000
droEug1
TT-CCCGTCATCCTAATAACCGCGAATCTGAAAACTTTTGGGATATACAATGTAAGTGA-TTTTATATTAT----------------------ACCGGA------------------T------------------TACATCTATAACGGTTTTAATTTTAAAAGGTCATATAAAACAAAAAAATGGTTG------------------------------------------------------------------------------------------GTAAAATTCACGAAATAAAAAAATCGTCAAACAAGTTAAGAATTACACGT-------GGGTTTGTAGACCACAGAGAATACG------GGGA-----AC-------------TTATAAG-----------------------------T---AATTATTTGCTTACAAAATAGAAA-CTACTTATCTGAAAGATTATGGTCTTTATCTAACATTG-TAT-TTCAAGTGGTCTGGTGA-ACT--GGA--CTATAATTTAA---GTT-A-AGTTGCTTATCTATAGAAAATACAT-------------------------------ATCGAAACAAGG----TGTAATTTTATT---TTACATGTGTAA-----------------TC------GTTTA-----TA--TTTTGTTTATAGGATTATCCAGTGAATGCTGATGCCGCCGTTTTACTTGTGCTAATGGAACTSizeHit CountTotal NormTotal
No Reads
droBia1
TT-CCCGTCATCTTGATAACCGCAAATCTGAAAACCTTTGGAATATATAATGTAAGTAG-ACTTTTCAA-TA--------------------AACGCAACTTTT-------------------------TTATAAAAAAA-----------------------------------------------TCGGCTAGGATCATCAAAAAGTTCTTACTTGAAGATTCTTCCACTTTGTAAC---------GTACTC-----TT-------ACACATTTTT----------------------------------AAAAAAGGCACTACACGT-------GGT-----------------------ATTAACTCAAAATA--------------------------------------------------------------TGTCTGTGTGATAAGAC-TTCCCTATCTGAAAGTTTATGATCTTTATCTAAGTTTT-TCTTTTAAAGTAGTTTCATGTTTCT--ATA--CATTTAATTAAAAGCTA-CAAACAGATTATCTACAATCAA-----------------------------------------------------------A---------------TATTTCATGTGATATAA-CA-TT------A---TATTTCTCTCTCAATCATTAAGGATTATCCACTAAATGCTGATGCTGCCGTTCTGCTGGTGCTGATGGAACTSizeHit CountTotal NormTotal
No Reads
droTak1
TT-CCTGTCATCTTGATCACCGCGAATCTGAAAACTTTTGGAATATATAATGTAAGTAA-TGTTATCTTCTA--------------------AACTTTACTTTTCA-------CTTTTAATTCATTTCATTTTAATATTATCTGCTACG-----------------------------------------------------------TTTT--------------------------T---------TAATTT-----TT-------ATTTATTTAAAAGTAAATTA-----------------------------AACAATTACACGT-------GGAGG--------------------TAACACCTTAACATAAT-------------TCAAGAAGTACAAATAAACGCATTTGTACAAATAAAC-GCA--TTTGTACTTCAAAGATAAGGGCCTTCCTATCTATAAGATGATAATCTTTATCTAAGCT-----T-TTAGTTTGGTTTTATGATTATTATGA--CTATTATTTAAGAGGTC-AAGAGTTGTTATCTATAGCATGT--AT-------------------------------CTCTAAACAAAAAA--AGTAA---TGTTTTATAAAA----------TGTCATACTATTT-TT------G---GTTTTCTCT--CTGAATCGTAGGACTATCCAGTGAATGCTGATGCTGCCGTTTTACTGGTGCTTATGGAACTSizeHit CountTotal NormTotal
No Reads
droEle1
CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGATAAGAA-CTCTTTATCTGAAAGATTACGGTCTTGATCTAACTTTGGTTTTTCAAGGTTATTTCATAAACCT--AAAAAAAAAGATTTACTGGGTC-CAAAGTGGTTGTCTATAGTAAATACAA-------------------------------ATCGTAACAAAA----AGCAACTATGTTT---------------TACGAAATGTAT-TA-AT------G---TTTTCCTTTATCAACTTTTTAGGATTACCCGGTTAATGCAGATGCAGCCGTTTTGTTGGTGCTCATAGAACTSizeHit CountTotal NormTotal
No Reads
droRho1
TC-CCCGTCATATTAATAACCGCAAATCTAAAAACATTTGGAATATATAATGTAAGGCGTTATGCT-----TAAA-----------------A---AA---TATTA-------TTTTAG---------------------------ATA--------------CGTTTATATAAAATTAAAGTAATGTAGGTTAGGA-----AAAACGCTTT--------------------------C---------AAACTT-----TT-------ATATCTTGAT----------------------------------AAGTAAAAGATTACACGT-------GGCCG--------------------TAACAACTTAACATAAT-------------TCAAGAC-----------------------------CA-TAAATCTTTGCTTTCACGATAAGAT-TTCCCTATCTGAAAGACTATGGTCTTTGATAAACTG-----A-T---ATTAGCTCCATGATTCT--AAA--CAATGCCATACTAGTTA-TAAAGTGCTTGTTTATCGTAAATGCAC-------------------------------ATCTTAACAAAAAG--AGAAATTATGTTTTGGGAATAGTTATTTTTTGTAATATAC-TCATT------GTT-------TATCTTATATTTTTAGGATTATCCTGTTAATGCTGATGCTGCCGTTTTATTGGTGCTCATAGAACTSizeHit CountTotal NormTotal
No Reads
droFic1
TT-CCCGTCATCTTAATAACCGCGAATCTAAAAACCTTTGGAATCTATAATGTAAGTAC-TTTTAT--------TAGCTTAAAATCCGTAATG---AG---AAATCAC--------------------------------------------------------------CCAAAAATAAT---------------A-----C------------------------------------------------------ATGTCA----CTTACC-TA------AAAAG--------------------------------------------ACATTA----------------------------------------------------------------------------------------------GCAT--TCACTTTACAAGATAAGAG-CTCCTTATCTGAAAGCTCATTATGATTATCTAACCGATTTTTTATCAGGCGGTTCAGTGATTTT--AGA--TAACGTTTTAAGAGGTC-AAAAGATGCTATTTATAGTATTA-------------------------------------------------------AGGG---------------CTTTTTATGTAATACAAA---------------TTTT--TCTTTTATCTCTTAAGGATTACCCGGAGAACGCCGATGCTGCTGTTTTACTGATGCTCATTGAGCTSizeHit CountTotal NormTotal
No Reads
droKik1
TA-CCCGTCATTCTTATAACAGCTAACCTGAAAACGTTTGGCATATACAATGTAAGTTG-CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
---------------------------------ACTTTTGGCATATATAATGTGAGTAT-TCAAA------GAATAG-------------------TT---TTTTA-------ATTT-----------------------------------------------------------------------------------------------------------------------------------------AAATACTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCAAGG---------TCTTTTATTTGATTAGGATTATCCGTTGAATGCAGATGCTGCTGTTTTATTTGCACTTGTTGAATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATCCGTTGAATGCAGATGCTGCTGT.....................2911.001010000
droBip1
A----------------------------------------------TAATGTGAGTAT-TCAAA------G------------------------AA---AAAATATTTTAAATTA---------------------------------------------------------------A---------------A-----C------------------------------------------------------AACTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCC---------------------------------------------TT-------------CT-------TGTTTTATTTGATTAGGATTATCCGTTGAATGCTGATGCTGCTGTTTTATTAGCACTTGTTGAATTSizeHit CountTotal NormTotal
No Reads
dp5
TA-CCAGTAATATTGATAACGGCAACTCTCAAAACATTTGGTGTATTTAATGTAAGTAT-TATGCTATTTT----------------------TTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT-----------------------GTCACCTCAGCATATTAGCCATAACCTTCTGAAGGAATACA-------GCTATTG-CCCAACACA----------AACTTTG----------------------------------------------------------------------------------------C-TTGAAATGACAA-AATAATCTGCAAGAAGCCAACGTAGTTTATATTGTATTTATATTATTAGTCCGTGTTCTTTCACATACAATATATTATTCTATT---CGACTTGGTCTTTCTTTTTATTAGC-TAATTTGAATGGCT-------TG--TTTTATTTTCAGGACTATCCCGTGAATGCTGATGTAACAGTCTTACTGGCACTCATAGAAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTAACAGTCTTACTGGCACT.........2612.0020200000000
.....................GCAACTCTCAAAACATTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.............TGATAACGGCAACTCTCAAAACATCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGTCTTACTGGCACT.........2011.0010100000000
.......................AACTCTCAAAACATTTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................GGCAACTCTCAAAACATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............ATAACGGCAACTCTCAAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATCCCGTGAATGCTGATGT...........................2311.0010000100000
........AATATTGATAACGGCAACTCTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.........ATATTGATAACGGCAACTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
TA-CCAGTAATATTGATAACGGCAACTCTCAAAACATTTGGTGTATTTAATGTAAGTAT-TATGCAATTTT----------------------TTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT-----------------------GTCACCTCAGCATATTAGCCATAACCTTCTGAAGGAATACA-------GCTATTGTCCCAACACA----------AACTTTG----------------------------------------------------------------------------------------C-TTGAAATGACAA-AATAATCTGCAAGAAGCCAACGTAGTTTATATTGTATTTATATTATTAGTCCGTGTTCTTTCACATACAATATATTATTCTATT---CGACTTGGTCTTTCTTTTTATTAGC-TAATTTGAATGGCT-------TG--TTTTATTTTCAGGACTATCCCGTGAATGCTGATGTAACAGTCTTACTGGCACTCATAGAAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................AACGGCAACTCTCAAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.005500000
.................AACGGCAACTCTCAAAACATTTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.003300000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTACTGGCACTCATAGA...2011.001010000
.............TGATAACGGCAACTCTCAAAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGAATGCTGATGTAAC........................1911.001000010
.....AGTAATATTGATAACGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..............GATAACGGCAACTCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droWil2
AA-TTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTTTTGTAGGATTACCCGTTGAATGCCGATGCAGCTGTGCTTATGATACTAATGGAGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATGATACTAATGGAGAT2111.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCGTTGAATGCCGATGCAGCTG......................2511.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAATGCCGATGCAGCTGTGC...................2411.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCGATGCAGCTGTGC...................1811.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCGATGCAGCTGTGCTTATG..............2611.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATGCAGCTGTGCTTATGATAT..........2511.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAGGATTACCCGTTGAATGCC................................2511.00100100
droVir3
AA-TCAT--------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA---------------TTATTATAT-TTTTTTTTTCAGGATTATCCCTTAAATGCTGATTCCGCGGTGTTAATGGCACTTATAGAAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCCTTAAATGCTGATTCCGCGGT.....................2613.003000000000000001000000000000000000000000000000000000000000001010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCCTTAAATGCTGATTCCGCGG......................2512.002002000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCTGATTCCGCGGT.....................1811.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATGGCACTTATAGA...1811.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATGCTGATTCCGCGGT.....................2011.001000000000000000000000000000000000000000000000000000000000000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTTAAATGCTGATTCCGCGGT.....................2511.001000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTTAAATGCTGATTCCG.........................2111.001000000000000000000000000000000000000000100000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTTAAATGCTGATTCCGCGGTGT...................2711.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
TTACCTCTTATTTTGATCACAGCCAATTTGAAGACATTTGGCATAATTAATGTAAGTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
TTACCTCTTATTTTGATCACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.............TGATCACAGCCAATTTGAAGACATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..ACCTCTTATTTTGATCACAGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droGri2
TT-AAAATAACTCC---------------------------------------------------------TCATAAATAAATAAATACATAA---GC---AATGA-------ATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-----------------------------------------------------------------------------------------------------------------TCA-TTTTTTTTTTAGGATTATCCATTAAATGCTGATGCCGCAGTTTTGATGTCACTTATAGAAGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:55 PM