dsi_18432

exon [3l_16540519_16540673_+]; CDS [3l_16540519_16540673_+]; intron [3l_16540674_16541704_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TATGTGCAACCTCGTTTCCTCACCGCCTTGAACCACAGCCGCGACGTCAGGTAGGTGCCAGGGCTATATTTAAGCGGTCAGCAACTATCCACCCACCTGAGCAGGAGCACTCCGACCACGTCTTCACACCCTGATTTTTCTCTCAGGCTCAGATTCTTCTCTAGTCTCAGTTTATCTTTGTCTCTTTCATGAAGTGCACTATTTTCATCGTGTACTGTACTTTTTATCTTTGATTCTCTAAACATTTTAC ************************************************...((((((((((............((((........(((.............))).......))))...........)))))........((.(((((.(((......)))))))).)).....((((((.......)))))).)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	M053 female body	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
........................GCCTTGAACCACAGCCGCGACGTCAGCT......................................................................................................................................................................................................	28	1	1	2.00	2	2	0	0	0	0	0	0	0
........................GCCTTGAACCACAGCCGCGA..............................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0
.............................GAACCACAGCCGCGACGTCAGC.......................................................................................................................................................................................................	22	1	1	1.00	1	0	1	0	0	0	0	0	0
...................TCACCGCCTTGAACCACA.....................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0
......CAACCTCGTTTCCTCACCGC................................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	1	0	0	0
........ACCTCGTTTCCTCACCGCCTTGAACCACA.....................................................................................................................................................................................................................	29	0	1	1.00	1	0	0	1	0	0	0	0	0
..................................................GCAGGTGCCATGGCTGTATTT...................................................................................................................................................................................	21	3	5	0.20	1	0	0	0	0	0	1	0	0
..................................................................................................................................................GCTGAGATTCTTCTGTA.......................................................................................	17	2	17	0.06	1	0	0	0	0	0	0	1	0
.............................................................................................................CTGCGACAACGTCTTCACT..........................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1

ATACACGTTGGAGCAAAGGAGTGGCGGAACTTGGTGTCGGCGCTGCAGTCCATCCACGGTCCCGATATAAATTCGCCAGTCGTTGATAGGTGGGTGGACTCGTCCTCGTGAGGCTGGTGCAGAAGTGTGGGACTAAAAAGAGAGTCCGAGTCTAAGAAGAGATCAGAGTCAAATAGAAACAGAGAAAGTACTTCACGTGATAAAAGTAGCACATGACATGAAAAATAGAAACTAAGAGATTTGTAAAATG ************************************************...((((((((((............((((........(((.............))).......))))...........)))))........((.(((((.(((......)))))))).)).....((((((.......)))))).)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M023 head	SRR553488 RT_0-2 hours eggs
................AGGAGTTGCGGAACTTGC........................................................................................................................................................................................................................	18	2	2	0.50	1	1	0	0
................................................................................................................................................TCCGAGTCTAAGAGCAGA........................................................................................	18	2	4	0.25	1	0	1	0
.....................................CGGCGATCCAGTCCAT.....................................................................................................................................................................................................	16	2	8	0.13	1	1	0	0
..................................................................................................................................................CGAGTCTAGTAAGAGAT.......................................................................................	17	2	16	0.06	1	0	0	1
.........................................................................................................................................................................................................................ATGGAAAATAGAAAC..................	15	1	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3l:16540624-16540873 +	dsi_18432	TATGTGCAACCTCGTTTCCTCACCGCCTTGAACCACAGCCGCGACGTCAGGTAGGTGCCA--G-----GG-CTAT-A--TTTAA--GCGGT--CAGCAACTAT---------CCACCCACCTGA---GC----------------------------------AGGAGCACTCCGACCACGTCTTCACACCCTGA--------------------------------TTTTTCTCTCAGGCTCAGATTCTTC--------TCTAGTCT--CAGTTTAT-----CTT--------T-GTCTCT----TTC-ATGAAGTGCA----CTAT--------TTTCATCGTGTACTGTAC-----TT--TTTATC-TTTGAT--TCTCTAA----------------------------------------------ACATTTTAC
droSec2	scaffold_0:9019462-9019711 +		TATGTGCAACCTCGTTTCCTCACCGCCTTGAACCACAGCCGCGACGTCAGGTAGGTGCCA--G-----GG-CTAT-A--TTTTA--GCGGT--CAGCAACTAT---------CCACCCACCTGA---GC----------------------------------AGCAGCACTCCGACCACGTCTTCACACCCTGA--------------------------------TTTTTCTCTCAGGCTCAGATTCTTC--------TCTAGTCT--CAGTTTAT-----CTT--------T-GTCTCT----TTC-ATGAAGTGCA----CTAT--------TTTCATCGTGTACTGTAC-----TT--TTTATC-TTTGAT--TCTCTAA----------------------------------------------ACATTTTAA
dm3	chr3L:16958029-16958278 +		TATGTGCAACCTCGTTTCCTCACCGCCTTGAACCACAGCCGCGACGTCAGGTAGGTGCCA--G-----GG-CTAT-A--TTTAA--GCGGT--CAGCAACTAT---------CCACCCACAAGA---GC----------------------------------AGGAGCACTCCGACCACGTCCTCACTCCCTGA--------------------------------TTTTTCTCTCAGGCTCAGATTCTTC--------TATAGTCT--CAGTTTAT-----CTT--------T-GTCTAT----TTC-ATAAAGTGCA----CTAT--------TTTCATCGTGTACTGTAC-----TT--TTTATC-TTTGAT--TCTCTAA----------------------------------------------ACATTTTAC
droEre2	scaffold_4784:16884601-16884849 -		TATGTGCAACCTCGTTTCCTCACCGCCTTGAACCACAGCCGCGACGTCAGGTAGGTGCCA--G-----GG-CTAT-A--TCTAA--GCGGT--CAGCAACTAT---------CCACCCACCTGA---AC----------------------------------AGGAGCACTCCGACCACGTCCTCACACCCCGA--------------------------------TTT-TTTCTCAGTCTCAGATTCTTC--------TCTAGTCT--CAGTTTCT-----CCT--------T-GTCTCT----TTC-ATGAAGTGCA----CTAT--------TTTCATCGTGCACTGTAC-----TC--TTTATC-TTTGAT--TCTCCAA----------------------------------------------ACATTTTAC
droYak3	3L:17117097-17117346 -		TATGTGCAACCTCGCTTCCTCACCGCCCTGAACCACAGCCGCGACGTCAGGTAGGTGACA--G-----GG-CTAT-A--TCTAA--GCGGT--CAGCAAGTAT---------CCACCCACCTGA---AC----------------------------------AGGAGCACTCCGACCACGTCCTCACACCACGA--------------------------------TTTTTCTCTCTGGCTCAGATTCTTC--------TCTAGTCT--CAGTTTAT-----CTT--------T-GTCTCT----TTC-ATGAAGTGCA----CTAT--------TTTCATCGTGCACTGTAC-----TA--CTTATC-TTTGAT--TCTCTAA----------------------------------------------ACATTTTAC
droEug1	scf7180000409711:380529-380784 -		TATGTGCAGCCCCGATTCCTCACCGCCTTGAACCACAGCCGCGATGTCAGGTAGGTGCCA--G-----GG-CAAT-A--TTTAA--GGGGT--CAGCAACTAT---------CCACCCACCTGA------------------------------------GGCAGGAGCACTCCGTCCACTACCTCACGCCCCAA-------------------------------ACTTTTCTCTCAGGCTCAGATTCTTC--------TCCAGTCT--TAGTTTAT---CTCTT--------T-GTCTCT----TTA-ATAGAGTGCA----CTTT--------TCTCATCGTGCACCGTATA--TGAT---TTTAC-TTTGAT--TCTCTGA----------------------------------------------ATATCTTGC
droBia1	scf7180000302428:3154106-3154356 -		TACGTGCAGCCCCGTTTCCTCACCGCCCTGAACCACAGCCGCGACGTCAGGTAGGTGCCA--G-----GG-CTAA-G--GTTAA--GCGTT--CAGCAACCAT---------CCACCCGGCTGA------------------------------------GACAGGAGCACTCCGACCACGTCCTCACGCCCCAG--------------------------------TTTTCCTCTCAGTCTCAGATTCGTC--------TCCAGCCT--TAGTTTAT-----TTT--------T-GACTCT----T-A-ATGGAGTGCA----CTAT--------TCTCATCGTGCACTGTATC--T--C--TTTTAC-TTTGAA--TCTCTGA----------------------------------------------ATATCTTAC
droTak1	scf7180000415352:403620-403845 -		TACGTGCAGCCTCGTTTCCTCACCGCCCTGAACCACAGCCGCGACATCAGGTAGGTGCCA--G-----TA-ATA--------AA--GGG------------AT---------CCACCCATCTGA------------------------------------GACAGGAGCACTCCGATAAAGTCCTCACGCCCCAG--------------------------------TTTTTCTCTCAGTCTCAGATTC-----------------------GCTTCT-----TCT--------T-ATCCCT----TCA-ATGGAGTGCA----CTAT--------TCTCATCGTGCACTGTATC--TCTT---TTTACTTATGAT--TCTCTGA----------------------------------------------ATATCTTAC
droEle1	scf7180000491255:3393603-3393852 +		TACGTGCAGCCGCGCTTCCTCACCGCCCTGAACCACAGCCGCGATATCAGGTAGGTGCCA--GGGCAGGG-CTAT-A--GTTAA--GCGGT--CAGCAAATAC---------CCATCCGCCTGA------------------------------------AAGAGGAGCACTCCAACCACGTC--------CCGA--------------------------------TTCTTCTCTCAGGCTCCAGTTCTTC--------TCCAGTCG--CGGTTTTT-----CTA--------T-GTCTCT----TCA-CTGGAGTGCA----CTAT--------ACTCATCGTGCACTGTATC--TATT--TTTTAC-TTTGAT--ACTCTGA----------------------------------------------ATATTTTA-
droRho1	scf7180000779902:113134-113378 -		TACGTGCAGCCGCGCTTCCTCACCGCCCTCAACCACAGCCGCGATGTCAGGTAGGTGCCA--G-----GG-CTAA-A--GTTAA--GCGGT--CAGCAAATAC---------CCAC-CACCTGA------------------------------------AAGATGTGCACTTCAACCACGTCCCCACGCCCCTA--------------------------------CTCTTCTCTCAGGATCCAGTTCTTC--------TCCAGTCA--CAGTTTAT-----CTA--------T-GTCTCT----TTA-ATGGAGTGCA----CTAT--------ACTCACTGTGCACTGT--------T---TTTAC-TTTGAT--TCTCTGA----------------------------------------------ATATTCTA-
droFic1	scf7180000454113:3650372-3650617 -		TACGTGCAGCCCCGTTTCCTCACCGCCCTCAACCACGGTCGCGATGTCAGGTAGGTGTTA--G-----AA-TCATCA--CTTAA--G--AT--CAACCCA-----CTGGTGTCCACCTACTTAAAAAAC----------------------------------AGCAGCACC-CAAAGAAGT------ACCCTGA--------------------------------TT------TTAGGCTCCGATTCTTC--------TCCAGTCT--CAGTTTAT-----CTA--------TAATCTCC----TTT-ATAGTGTGCA----CTAT--------ACTCATCGTGCACTGTATC--AGTT---TTTAT-TTTGAT--TCTCTCA----------------------------------------------ATATCTTAC
droKik1	scf7180000302486:795853-796102 +		TATGTGCAGCCCCGCTTCCTCACCGCCCTTAACCACAGCCGCGACGTCAGGTAGGTGCCA--G-----GG-CTAG-A--ACCCTAAGCAGT--CAT-------------------CCCACCTGG------------------------------------TAGAG----ACTGAGTCCGCGCC-T--CAGCCTGA----------TC--------------------CCTTTCCCCCAGGCTACGTATCTTC--------TGCAGTCTCTCTGTGTAT-----CTC--------T-GTCCCT----TGGAGTGAAGTGCACCCACTAC--------TCTCACCGTGCACTGTATC--TGTTTTTTTTAC-TTTGAT--TCTCTCA----------------------------------------------ATATCTTTC
droAna3	scaffold_13337:13664027-13664268 -		TACGTCCAGCCGCGTTTCCTCACCGCCCTCAACCACAGCCGCGACGTGAGGTAGGTGCCG--G-----GGTCTAG-AAATCTAA--GGCCA--CAGAATCAATCC-------AC-CCGACCCGA--------------------------------------------------------GTCC-----CCCT-----------------------------------GTCTATCTCAGGGTCCAATTCTTCAAACATTCTCTTCTAT--TAGT---T-----CTC--------T-GTCTCCACAATCT-CTGGCGTGCA----CCGC------TCTCTCATCGTGCACTGTGTC--TAAT---TTTAC-GTTGATTTTCTCTGA----------------------------------------------TTATCTTCC
droBip1	scf7180000395832:605465-605702 -		TATGTCCAGCCGCGTTTCCTGACCGCCCTCAATCACAGCCGCGATGTGAGGTAGGTGCCG--G-----GGTCTAG-A--ACCAA--ATGGCTATAGAATCAAA---------CCTCCCCCA-----------------------------------------------------------------AGACCCTAG--------------------------------AATCTCGCTCAGGGTCGGATTCTTCAAACATATTCTTCTAT--TAGT---T-----CTC--------T-GTCTCCACAATCT-CTGGCGTGCA----CCAC--------TCTCATCGTGCACTGTCTC--TAAT---TTTAC-GTTGATTTTCTCTGA----------------------------------------------TTATCTTCC
dp5	XR_group8:4780610-4780900 +		TATGTCCAGCCCCGTTTCCTCACCGCCCTCAACCACAGTCGCGATGTCAGGTAGGTGCCACAG-----GG-CCAG-G--GCTAA--ACTTT--AAGCAACGAC---------ACAC-GATCCGA------------------------------------CCCAC----AC------------CTGAAGCCCCGACCCAGCCCCATCGCTCTCTTGGATAGACTCTCTCTCTCTCTCTCTCTCTGTTTCTCT--------CTCTCTT-----GTTTTTTTTCTCCGTTTCTCTGTTATCAA-------C-TTAGAGTGCA----CCTCTCTCTCTCTCTCATCGTGCACTCTTTACTCGATTAAGATTC-TTTGAT--TCTCTTA----------------------------------------------TCTTATCTA
droPer2	scaffold_29:1022666-1022734 +		TCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------T-GTCTCT----CTC-TCATCGTGCA----AGTC--------TGTGCTCGGGTGCGA--------------TTCA-GCTGAT--TCTCCAA----------------------------------------------TCTTATCAG
droWil2	scf2_1100000004511:1297707-1297763 +		TATGTTCAGCCACGTTTCCTTACCTCTCTAAATCACAGTCGCGATGTCAGGTAGGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13049:10205616-10205889 -	dvi_19313	TATGTCCAGCCGCGTTTCCTCACCGCTCTCAACCACAGCCGTGATATCAGGTGCGTGCTA--A-----CT------------------ATT--AAGTTTCTAT---------CCAAGCAATACC----AAGAGAAACACAGAAATCCGCCCCATGCCACAACAAGTCGCAATCTCTTTACTCTCTCTCTCTCTCA-------------------------------ATTTTTCTCTCTGGATTTGT-----------------------------------------------------------------------TAG----CTGC------TCTC------TG--CAGTTTT--TTCT---TTTAC-GTTGGTTTTCTGTGACTTAAGTTTAATTATTTTAATTCAACTGCACTTAATGCACTCTATTATTTATTAG
droMoj3	scaffold_6680:10591526-10591603 +		TATGTACAGCCCCGTTTCCTCACCGCCCTCAACCACAGCCGTGATATCAGGTGCGTAG-----------------------TTA--GCATT--AAGCAACCAT---------CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15110:9036718-9036790 +		TATGTCCAGCCGCGTTTCCTCACTGCGCTGAACCATAGCCGTGACATCAGGTACGTGCCT--A-----GA---------TTTAA--GTGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TATGTGCAACCTCGTTTCCTCACCGCCTTGAACCACAGCCGCGACGTCAGGTAGGTGCCA--G-----GG-CTAT-A--TTTAA--GCGGT--CAGCAACTAT---------CCACCCACCTGA---GC----------------------------------AGGAGCACTCCGACCACGTCTTCACACCCTGA--------------------------------TTTTTCTCTCAGGCTCAGATTCTTC--------TCTAGTCT--CAGTTTAT-----CTT--------T-GTCTCT----TTC-ATGAAGTGCA----CTAT--------TTTCATCGTGTACTGTAC-----TT--TTTATC-TTTGAT--TCTCTAA----------------------------------------------ACATTTTAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................GCCTTGAACCACAGCCGCGA............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................GAACCACAGCCGCGACGTCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TCACCGCCTTGAACCACA...................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CAACCTCGTTTCCTCACCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........ACCTCGTTTCCTCACCGCCTTGAACCACA...................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TATGTGCAACCTCGTTTCCTCACCGCCTTGAACCACAGCCGCGACGTCAGGTAGGTGCCA--G-----GG-CTAT-A--TTTTA--GCGGT--CAGCAACTAT---------CCACCCACCTGA---GC----------------------------------AGCAGCACTCCGACCACGTCTTCACACCCTGA--------------------------------TTTTTCTCTCAGGCTCAGATTCTTC--------TCTAGTCT--CAGTTTAT-----CTT--------T-GTCTCT----TTC-ATGAAGTGCA----CTAT--------TTTCATCGTGTACTGTAC-----TT--TTTATC-TTTGAT--TCTCTAA----------------------------------------------ACATTTTAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................GAACCACAGCCGCGACGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	1
....................CACCGCCTTGAACCACAGCCGCGACG..........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
...GTGCAACCTCGTTTCCTCACCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
..........................CTTGAACCACAGCCGCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..TGTGCAACCTCGTTTCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
TATGTGCAACCTCGTTTCCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
...........................TTGAACCACAGCCGCGACGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
...........................TTGAACCACAGCCGCGACG..........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
...........TCGTTTCCTCACCGCCTTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
.ATGTGCAACCTCGTTTCCTCACCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
..............................AACCACAGCCGCGACGTC........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
..................CTCACCGCCTTGAACCACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
....................CACCGCCTTGAACCACAGCC................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0

dm3

TATGTGCAACCTCGTTTCCTCACCGCCTTGAACCACAGCCGCGACGTCAGGTAGGTGCCA--G-----GG-CTAT-A--TTTAA--GCGGT--CAGCAACTAT---------CCACCCACAAGA---GC----------------------------------AGGAGCACTCCGACCACGTCCTCACTCCCTGA--------------------------------TTTTTCTCTCAGGCTCAGATTCTTC--------TATAGTCT--CAGTTTAT-----CTT--------T-GTCTAT----TTC-ATAAAGTGCA----CTAT--------TTTCATCGTGTACTGTAC-----TT--TTTATC-TTTGAT--TCTCTAA----------------------------------------------ACATTTTAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........CCTCGTTTCCTCACCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ACCACAGCCGCGACGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TGTGCAACCTCGTTTCCTCACCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ACCGCCTTGAACCACAGCCGCGACGTC........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ACCTCGTTTCCTCACCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ACCTCGTTTCCTCACCGCCTTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................CCGCCTTGAACCACAGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CACCGCCTTGAACCACAGCC................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TCACCGCCTTGAACCACAGCCGC..............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CACAGCCGCGACGTCAGGTAGGTGC..............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................A---GC----------------------------------AGGAGCACTCCGACCA.....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................AGCCGCGACGTCAGGTAGG.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TATGTGCAACCTCGTTTCCTCACCGCCTTGAACCACAGCCGCGACGTCAGGTAGGTGCCA--G-----GG-CTAT-A--TCTAA--GCGGT--CAGCAACTAT---------CCACCCACCTGA---AC----------------------------------AGGAGCACTCCGACCACGTCCTCACACCCCGA--------------------------------TTT-TTTCTCAGTCTCAGATTCTTC--------TCTAGTCT--CAGTTTCT-----CCT--------T-GTCTCT----TTC-ATGAAGTGCA----CTAT--------TTTCATCGTGCACTGTAC-----TC--TTTATC-TTTGAT--TCTCCAA----------------------------------------------ACATTTTAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........TCGTTTCCTCACCGCCTTGAACCACAGCC................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	38.00	38	0	0	0	0	0	0	38
.ATGTGCAACCTCGTTTCCTCACCGCCT............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0	0
.....................ACCGCCTTGAACCACAGCCGCGACGTC........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0	0
................................CCACAGCCGCGACGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.............GTTTCCTCACCGCCTTGAA........................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.............................GAACCACAGCCGCGACGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
.........................CCTTGAACCACAGCCGCGACGTC........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.........CCTCGTTTCCTCACCGCCTTGAACC......................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
......................CCGCCTTGAACCACAGCCGCGACGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.....GCAACCTCGTTTCCTCACCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.......AACCTCGTTTCCTCACCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.....GCAACCTCGTTTCCTCACCGCCC............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
..............................AACCACAGCCGCGACGTC........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
..............................AACCACAGCCGCGACGTCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..TGTGCAACCTCGTTTCCTCACCGCCT............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.ATGTGCAACCTCGTTTCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
........................GCCTTGAACCACAGCCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.............GTTTCCTCACCGCCTTGAACCACAGCCGC..............................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
.................CCTCACCGCCTTGAACCAC....................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
...........................TTGAACCACAGCCGCGACGTCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.ATGTGCAACCTCGTTTCCTCACCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
..TGTGCAACCTCGTTTCCTCACCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
....................CACCGCCTTGAACCACAGCCGCGA............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
............................TGAACCACAGCCGCGACGTC........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
TATGTGCAACCTCGTTTCCTCACC................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.....GCAACCTCGTTTCCTCACCGCCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
TATGTGCAACCTCGTTTCCTCACCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
........ACCTCGTTTCCTCACCGCCTTGAACCACA...................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
..........................CTTGAACCACAGCCGCGACGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.....GCAACCTCGTTTCCTCACC................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
.........................CCTTGAACCACAGCCGCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...............TTCCTCACCGCCTTGAACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..............................AACCACAGCCGCGACGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
...................TCACCGCCTTGAACCACAGCCG...............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..................CTCACCGCCTTGAACCACAGCCGC..............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.........CCTCGTTTCCTCACCGCCTTGAACCACA...................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.........CCTCGTTTCCTCACCGCCT............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
....................CACCGCCTTGAACCACAGCCGC..............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
............................TGAACCACAGCCGCGACGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...........................TTGAACCACAGCCGCGACG..........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................GGAGCACTCCGACCACGTCCT...............................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
................TCCTCACCGCCTTGAACCACAGCC................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
TATGTGCAACCTCGTTTCCTCACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0

droYak3

TATGTGCAACCTCGCTTCCTCACCGCCCTGAACCACAGCCGCGACGTCAGGTAGGTGACA--G-----GG-CTAT-A--TCTAA--GCGGT--CAGCAAGTAT---------CCACCCACCTGA---AC----------------------------------AGGAGCACTCCGACCACGTCCTCACACCACGA--------------------------------TTTTTCTCTCTGGCTCAGATTCTTC--------TCTAGTCT--CAGTTTAT-----CTT--------T-GTCTCT----TTC-ATGAAGTGCA----CTAT--------TTTCATCGTGCACTGTAC-----TA--CTTATC-TTTGAT--TCTCTAA----------------------------------------------ACATTTTAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................GAACCACAGCCGCGACGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.............................GAACCACAGCCGCGACGTC........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
....................CACCGCCCTGAACCACAGCC................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
...................TCACCGCCCTGAACCACAGCC................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............CGCTTCCTCACCGCCCTGAACCAC....................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......AACCTCGCTTCCTCACCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................CGCCCTGAACCACAGCCGC..............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................CTGAACCACAGCCGCGACGT.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................CCTGAACCACAGCCGCGACGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................CCCTGAACCACAGCCGCGACGTCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................TCACCGCCCTGAACCACAGCCGCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........CCTCGCTTCCTCACCGCCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
....................CACCGCCCTGAACCACAGCCGCGA............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....GCAACCTCGCTTCCTCACC................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................GCCCTGAACCACAGCCGC..............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TATGTGCAGCCCCGATTCCTCACCGCCTTGAACCACAGCCGCGATGTCAGGTAGGTGCCA--G-----GG-CAAT-A--TTTAA--GGGGT--CAGCAACTAT---------CCACCCACCTGA------------------------------------GGCAGGAGCACTCCGTCCACTACCTCACGCCCCAA-------------------------------ACTTTTCTCTCAGGCTCAGATTCTTC--------TCCAGTCT--TAGTTTAT---CTCTT--------T-GTCTCT----TTA-ATAGAGTGCA----CTTT--------TCTCATCGTGCACCGTATA--TGAT---TTTAC-TTTGAT--TCTCTGA----------------------------------------------ATATCTTGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TACGTGCAGCCCCGTTTCCTCACCGCCCTGAACCACAGCCGCGACGTCAGGTAGGTGCCA--G-----GG-CTAA-G--GTTAA--GCGTT--CAGCAACCAT---------CCACCCGGCTGA------------------------------------GACAGGAGCACTCCGACCACGTCCTCACGCCCCAG--------------------------------TTTTCCTCTCAGTCTCAGATTCGTC--------TCCAGCCT--TAGTTTAT-----TTT--------T-GACTCT----T-A-ATGGAGTGCA----CTAT--------TCTCATCGTGCACTGTATC--T--C--TTTTAC-TTTGAA--TCTCTGA----------------------------------------------ATATCTTAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TACGTGCAGCCTCGTTTCCTCACCGCCCTGAACCACAGCCGCGACATCAGGTAGGTGCCA--G-----TA-ATA--------AA--GGG------------AT---------CCACCCATCTGA------------------------------------GACAGGAGCACTCCGATAAAGTCCTCACGCCCCAG--------------------------------TTTTTCTCTCAGTCTCAGATTC-----------------------GCTTCT-----TCT--------T-ATCCCT----TCA-ATGGAGTGCA----CTAT--------TCTCATCGTGCACTGTATC--TCTT---TTTACTTATGAT--TCTCTGA----------------------------------------------ATATCTTAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TACGTGCAGCCGCGCTTCCTCACCGCCCTGAACCACAGCCGCGATATCAGGTAGGTGCCA--GGGCAGGG-CTAT-A--GTTAA--GCGGT--CAGCAAATAC---------CCATCCGCCTGA------------------------------------AAGAGGAGCACTCCAACCACGTC--------CCGA--------------------------------TTCTTCTCTCAGGCTCCAGTTCTTC--------TCCAGTCG--CGGTTTTT-----CTA--------T-GTCTCT----TCA-CTGGAGTGCA----CTAT--------ACTCATCGTGCACTGTATC--TATT--TTTTAC-TTTGAT--ACTCTGA----------------------------------------------ATATTTTA-	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TACGTGCAGCCGCGCTTCCTCACCGCCCTCAACCACAGCCGCGATGTCAGGTAGGTGCCA--G-----GG-CTAA-A--GTTAA--GCGGT--CAGCAAATAC---------CCAC-CACCTGA------------------------------------AAGATGTGCACTTCAACCACGTCCCCACGCCCCTA--------------------------------CTCTTCTCTCAGGATCCAGTTCTTC--------TCCAGTCA--CAGTTTAT-----CTA--------T-GTCTCT----TTA-ATGGAGTGCA----CTAT--------ACTCACTGTGCACTGT--------T---TTTAC-TTTGAT--TCTCTGA----------------------------------------------ATATTCTA-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TACGTGCAGCCCCGTTTCCTCACCGCCCTCAACCACGGTCGCGATGTCAGGTAGGTGTTA--G-----AA-TCATCA--CTTAA--G--AT--CAACCCA-----CTGGTGTCCACCTACTTAAAAAAC----------------------------------AGCAGCACC-CAAAGAAGT------ACCCTGA--------------------------------TT------TTAGGCTCCGATTCTTC--------TCCAGTCT--CAGTTTAT-----CTA--------TAATCTCC----TTT-ATAGTGTGCA----CTAT--------ACTCATCGTGCACTGTATC--AGTT---TTTAT-TTTGAT--TCTCTCA----------------------------------------------ATATCTTAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TATGTGCAGCCCCGCTTCCTCACCGCCCTTAACCACAGCCGCGACGTCAGGTAGGTGCCA--G-----GG-CTAG-A--ACCCTAAGCAGT--CAT-------------------CCCACCTGG------------------------------------TAGAG----ACTGAGTCCGCGCC-T--CAGCCTGA----------TC--------------------CCTTTCCCCCAGGCTACGTATCTTC--------TGCAGTCTCTCTGTGTAT-----CTC--------T-GTCCCT----TGGAGTGAAGTGCACCCACTAC--------TCTCACCGTGCACTGTATC--TGTTTTTTTTAC-TTTGAT--TCTCTCA----------------------------------------------ATATCTTTC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TACGTCCAGCCGCGTTTCCTCACCGCCCTCAACCACAGCCGCGACGTGAGGTAGGTGCCG--G-----GGTCTAG-AAATCTAA--GGCCA--CAGAATCAATCC-------AC-CCGACCCGA--------------------------------------------------------GTCC-----CCCT-----------------------------------GTCTATCTCAGGGTCCAATTCTTCAAACATTCTCTTCTAT--TAGT---T-----CTC--------T-GTCTCCACAATCT-CTGGCGTGCA----CCGC------TCTCTCATCGTGCACTGTGTC--TAAT---TTTAC-GTTGATTTTCTCTGA----------------------------------------------TTATCTTCC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................AACCACAGCCGCGACGTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	4	0	0	0	0	0
...............................ACCACAGCCGCGACGTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	3	0
...GTCCAGCCGCGTTTCCTCACC................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	3
..............................AACCACAGCCGCGACGTGA.......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.......................CGCCCTCAACCACAGCCGCGACGTGAG......................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.....CCAGCCGCGTTTCCTCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
........................GCCCTCAACCACAGCCGCGACGTG........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................AACCACAGCCGCGACGTGAG......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........GCGTTTCCTCACCGCCCTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.............................CAACCACAGCCGCGACGTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...GTCCAGCCGCGTTTCCTCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.ACGTCCAGCCGCGTTTCCTCACC................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....TCCAGCCGCGTTTCCTCACCGCCCTC..........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............CGTTTCCTCACCGCCCTCAACCACAGCC................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.............................CAACCACAGCCGCGACGTG........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
............................TCAACCACAGCCGCGACG..........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.................CCTCACCGCCCTCAACCACAGCCGC..............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...GTCCAGCCGCGTTTCCTCACCGCCC............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
....................CACCGCCCTCAACCACAGCCGCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................T---T-----CTC--------T-GTCTCCACAATCT-CTGGCGTGC.........................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...........GCGTTTCCTCACCGCCCTCAACCACAGCC................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
................................CCACAGCCGCGACGTGAG......................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0

droBip1

TATGTCCAGCCGCGTTTCCTGACCGCCCTCAATCACAGCCGCGATGTGAGGTAGGTGCCG--G-----GGTCTAG-A--ACCAA--ATGGCTATAGAATCAAA---------CCTCCCCCA-----------------------------------------------------------------AGACCCTAG--------------------------------AATCTCGCTCAGGGTCGGATTCTTCAAACATATTCTTCTAT--TAGT---T-----CTC--------T-GTCTCCACAATCT-CTGGCGTGCA----CCAC--------TCTCATCGTGCACTGTCTC--TAAT---TTTAC-GTTGATTTTCTCTGA----------------------------------------------TTATCTTCC	Size	Hit Count	Total Norm	Total
No Reads

dp5

TATGTCCAGCCCCGTTTCCTCACCGCCCTCAACCACAGTCGCGATGTCAGGTAGGTGCCACAG-----GG-CCAG-G--GCTAA--ACTTT--AAGCAACGAC---------ACAC-GATCCGA------------------------------------CCCAC----AC------------CTGAAGCCCCGACCCAGCCCCATCGCTCTCTTGGATAGACTCTCTCTCTCTCTCTCTCTCTGTTTCTCT--------CTCTCTT-----GTTTTTTTTCTCCGTTTCTCTGTTATCAA-------C-TTAGAGTGCA----CCTCTCTCTCTCTCTCATCGTGCACTCTTTACTCGATTAAGATTC-TTTGAT--TCTCTTA----------------------------------------------TCTTATCTA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................GCCCTCAACCACAGTCGCGATGTC........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	0	1	0	0	0	0	0	0
.............................CAACCACAGTCGCGATGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................CAACCACAGTCGCGATGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0
....................CACCGCCCTCAACCACAGTCGCGATGTC........................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	2	0	0	0	0	0	0	0
..............................AACCACAGTCGCGATGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...........................CTCAACCACAGTCGCGATGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...GTCCAGCCCCGTTTCCTCACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............GTTTCCTCACCGCCCTCAACC......................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....CCAGCCCCGTTTCCTCACCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................CAACCACAGTCGCGATGTC........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................CTCAACCACAGTCGCGATGTCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................CACCGCCCTCAACCACAGTCGCGATGT.........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................CACAGTCGCGATGTCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................ACCGCCCTCAACCACAGTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................CACCGCCCTCAACCACAGTCGC..............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................AACCACAGTCGCGATGTCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TCTCTCTCTCTCTGTTTCTCT--------....................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................CTCTCTCTCTCTCTCTGTT.................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

TCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------T-GTCTCT----CTC-TCATCGTGCA----AGTC--------TGTGCTCGGGTGCGA--------------TTCA-GCTGAT--TCTCCAA----------------------------------------------TCTTATCAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

TATGTTCAGCCACGTTTCCTTACCTCTCTAAATCACAGTCGCGATGTCAGGTAGGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................AATCACAGTCGCGATGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	2	0	1	0
............................TAAATCACAGTCGCGATGTC........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0
...........................CTAAATCACAGTCGCGATGT.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
................TCCTTACCTCTCTAAATCACAGTCGCGA............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
..........................TCTAAATCACAGTCGCGATGTCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
........................TCTCTAAATCACAGTCGCGATGTC........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
................TCCTTACCTCTCTAAATCACAGTC................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
..........................TCTAAATCACAGTCGCGATGTC........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....................ACCTCTCTAAATCACAGTCGCGATGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0
.........................CTCTAAATCACAGTCGCGAT...........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
.................................CACAGTCGCGATGTCAGCC....................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
....................TACCTCTCTAAATCACAGTCGC..............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..................................ACAGTCGCGATGTCAGGTAGGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	23	1	1.00	1	0	0	0	1	0
....................TACCTCTCTAAATCACAGTCGCGATGTC........................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0
..................................ACAGTCGCGATGTCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	1	0

droVir3

TATGTCCAGCCGCGTTTCCTCACCGCTCTCAACCACAGCCGTGATATCAGGTGCGTGCTA--A-----CT------------------ATT--AAGTTTCTAT---------CCAAGCAATACC----AAGAGAAACACAGAAATCCGCCCCATGCCACAACAAGTCGCAATCTCTTTACTCTCTCTCTCTCTCA-------------------------------ATTTTTCTCTCTGGATTTGT-----------------------------------------------------------------------TAG----CTGC------TCTC------TG--CAGTTTT--TTCT---TTTAC-GTTGGTTTTCTGTGACTTAAGTTTAATTATTTTAATTCAACTGCACTTAATGCACTCTATTATTTATTAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................CACCGCTCTCAACCACAGCCGTGATATC........................................................................................................................................................................................................................................................................................................................................................................................................	28	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CACCGCTCTCAACCACAGCCGT..............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................GCTCTCAACCACAGCCGTGATATC........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CACCGCTCTCAACCACAGCC................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CACCGCTCTCAACCACAGCCGTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GCTCTCAACCACAGCCGTGATA..........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GTTTCCTCACCGCTCTCAACCACAGCCGT..............................................................................................................................................................................................................................................................................................................................................................................................................	29	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CTCACCGCTCTCAACCACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GCTCTCAACCACAGCCGTGATATCA.......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CCGCTCTCAACCACAGCCGTGA............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GTTTCCTCACCGCTCTCAACC......................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CCTCACCGCTCTCAACCACAGCCGT..............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................CTCAACCACAGCCGTGATATCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CACCGCTCTCAACCACAGCCGTGATA..........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CGCTCTCAACCACAGCCGT..............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TCACCGCTCTCAACCACAGCCGTGATATC........................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................ATCTCTTTACTCTCTCTCTCT.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TCCTCACCGCTCTCAACCACAGCC................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ACCGCTCTCAACCACAGCCGTGATATC........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TCACCGCTCTCAACCACAGCCGTGATA..........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TATGTCCAGCCGCGTTTCCTCACCGCTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TTTCCTCACCGCTCTCAACC......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GCTCTCAACCACAGCCGTGATAT.........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GCTCTCAACCACAGCCGTGA............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CCGCTCTCAACCACAGCCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GCCGCGTTTCCTCACCGCTCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TCCTCACCGCTCTCAACCACAGCCGT..............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............TTCCTCACCGCTCTCAACCACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ACCGCTCTCAACCACAGCC................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CACCGCTCTCAACCACAGCCGTGA............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CGTTTCCTCACCGCTCTCAACCC.....................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CTCTCAACCACAGCCGTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TCACCGCTCTCAACCACAGCC................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GTTTCCTCACCGCTCTCAACCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TGTCCAGCCGCGTTTCCTCACC................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GCTCTCAACCACAGCCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CTCACCGCTCTCAACCACAGCCGT..............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TCTGGATTTGT-----------------------------------------------------------------------TAG----CTGC------T.........................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........GCGTTTCCTCACCGCTCTCAACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGCCGCGTTTCCTCACCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TCACCGCTCTCAACCACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CTCAACCACAGCCGTGATA..........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAACCACAGCCGTGATATCA.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CAGCCGTGATATCAGGTGCG.................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............GTTTCCTCACCGCTCTCAACCACAGCCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............TTTCCTCACCGCTCTCAACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CCTCACCGCTCTCAACCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ACAGCCGTGATATCAGCCA...................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TATGTACAGCCCCGTTTCCTCACCGCCCTCAACCACAGCCGTGATATCAGGTGCGTAG-----------------------TTA--GCATT--AAGCAACCAT---------CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........CCCGTTTCCTCACCGCCCTCAACC......................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........CCCCGTTTCCTCACCGCCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........................CCTCAACCACAGCCGTGATA..........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...................TCACCGCCCTCAACCACAGCCGT..............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....................ACCGCCCTCAACCACAGCCGTGATATCAG......................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
............................TCAACCACAGCCGTGATATC........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
.............................CAACCACAGCCGTGATATCAG......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................CGCCCTCAACCACAGCCGTGATAT.........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
.....ACAGCCCCGTTTCCTCACCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................TCACCGCCCTCAACCACAGCCGTGA............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................ACCGCCCTCAACCACAGCCGT..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droGri2

TATGTCCAGCCGCGTTTCCTCACTGCGCTGAACCATAGCCGTGACATCAGGTACGTGCCT--A-----GA---------TTTAA--GTGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_18432

3l:16540674-16540823 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads