ID:

dsi_18424

Coordinate:

3l:15702803-15702952 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-23.8	-23.4	-23.4

Flybase annnotation

CDS [3l_15702716_15702802_+]; exon [3l_15702334_15702802_+]; intron [3l_15702803_15703394_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CCGCGGAGGGCAACAGCTACATAACCGCCTACCAAACGGTCATGAAAAAGGTAGCTCACCATAAAACCCACTGGGATTTCCCCCTTTCACCTACGCAACAGAACAAATGTCTGTTAAAAAACTTGAAGTGCGGCTTAATTTTAGATAAATATGGTGGAAAAATACTTAATATTGCTGTTGTGCATTGTCTCTTTTGGATAATTATGCTGGCACTTCTTCTTCACTTTCCTCTAAAAAGTGATATTGTCTA ************************************************.....((((((((.......((((((((...((.(((((.......((((((.......))))))........)))))...))...)))))))).....))))))))...........(((.(((......))).)))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	M023 head	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
..........................................................................................................................TTGAAGTGCGGCTTAATTTTA...........................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................CTTCTTCACTTTCCTCTT.................	18	1	3	0.33	1	0	1	0	0	0	0	0
...............................................AAGGTAGCTGACGATACAACC......................................................................................................................................................................................	21	3	3	0.33	1	1	0	0	0	0	0	0
..............................................................................................................................AGTACGGCTTAATTTTCGAA........................................................................................................	20	3	7	0.14	1	0	0	1	0	0	0	0
..........................................................................................................AAGTCTGTTAAAAAA.................................................................................................................................	15	1	20	0.10	2	0	0	0	1	0	1	0
....................................................................................................................................................................................TGTACTGTCTCTTTTGG.....................................................	17	2	19	0.05	1	0	0	0	0	1	0	0
..............................ACCAGACGGTCCTGAATA..........................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	1	0	0	0
................................................................................................AACAGATCAAATGTC...........................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	1

Anti-sense strand reads

GGCGCCTCCCGTTGTCGATGTATTGGCGGATGGTTTGCCAGTACTTTTTCCATCGAGTGGTATTTTGGGTGACCCTAAAGGGGGAAAGTGGATGCGTTGTCTTGTTTACAGACAATTTTTTGAACTTCACGCCGAATTAAAATCTATTTATACCACCTTTTTATGAATTATAACGACAACACGTAACAGAGAAAACCTATTAATACGACCGTGAAGAAGAAGTGAAAGGAGATTTTTCACTATAACAGAT ************************************************.....((((((((.......((((((((...((.(((((.......((((((.......))))))........)))))...))...)))))))).....))))))))...........(((.(((......))).)))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M024 male body	SRR902008 ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
...GCCTCCCGTTGTCGATGTATT..................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
...................................................................................GAAAGTGGGTGCGTTGTCTTG..................................................................................................................................................	21	1	1	1.00	1	0	1	0	0	0	0
...................GTATTGGCAGATGGTATGAC...................................................................................................................................................................................................................	20	3	3	0.33	1	0	0	1	0	0	0
...................................................ACCGAGTGGTATCTTGG......................................................................................................................................................................................	17	2	8	0.13	1	0	0	0	1	0	0
....................................................TCGAGTGATATCTTGG......................................................................................................................................................................................	16	2	16	0.06	1	0	0	0	1	0	0
.................ATGTATTGGCGGACGCT........................................................................................................................................................................................................................	17	2	16	0.06	1	0	0	0	0	1	0
............................................................................................................................................................................................................................AGTGCATGGAGATTTT..............	16	2	20	0.05	1	1	0	0	0	0	0
..............................TGGTCTGCCAGGACTT............................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	1

Generated: 04/23/2015 at 06:11 PM