ID:

dsi_1837

Coordinate:

3l:7448280-7448429 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GATCTCGAAGCCAGGAACCAAAGGAATCGCGAGCTCGTTAGCGTTCCAGGGTAAGCCTGCGTCTGGCATCGTAAACAAATGCCCGTCAAAAGGCATTCAGCTAAACACCGACAAAGTAGCAAACAAAATATATGTGGACAGCCAGCCCTCCATTTTGTATATGTGTATAATATGGGAACTTGCCAAGTTCAAGGCAGGAGTTGAAGATGTCTATATATGATGCATTGTATCCACAATTATGGCAGAGGGA ************************************************.....(((((..(((((...((..(((((((((........))))))..((((.............))))............)))..)).)))))....((((.((((((....)))))).))))((((((...))))))...)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	SRR902009 testis	SRR618934 dsim w501 ovaries
............................................................................................................................................................................................................................TGCATTGTATCCACAATTATGGCAGA....	26	0	1	1.00	1	1	0	0	0	0	0	0
................ACCAAAGGAATCGCGAGCTCGT....................................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0
..........................TCGCGAGCTCGTTAGCGTTCCAGG........................................................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0
............AGGAACCAAAGGAATCGCGAGCTCGTT...................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0
....................AAGGAATCGAGAGCTC......................................................................................................................................................................................................................	16	1	4	0.75	3	0	1	2	0	0	0	0
.....................AGGAATCGAGAGCTC......................................................................................................................................................................................................................	15	1	9	0.56	5	2	1	2	0	0	0	0
............................................................................................................................................................................................TCAAAGCAGGACTTGAAGAGGT........................................	22	3	5	0.20	1	0	0	0	0	1	0	0
....................................................................................................................................TGTGGACAGCGATCGCTCCA..................................................................................................	20	3	5	0.20	1	1	0	0	0	0	0	0
.......................................................................................................................................................ATTTAGTATACGGGTATAATA..............................................................................	21	3	5	0.20	1	0	0	0	1	0	0	0
....................AAGGAATCGAGAGCT.......................................................................................................................................................................................................................	15	1	11	0.18	2	0	0	2	0	0	0	0
..................CCAAGGAATCGAGAGCTC......................................................................................................................................................................................................................	18	2	7	0.14	1	0	0	0	0	0	1	0
.....................................................................................................................................GTGGACAGCCAGCTC......................................................................................................	15	1	16	0.06	1	0	0	0	0	0	0	1
...........................................................................................................................................................................................TTCAAGCCAGGAGCTGA..............................................	17	2	20	0.05	1	0	1	0	0	0	0	0
.........................ATCGCAAGATCGTTAGC................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	1

Anti-sense strand reads

CTAGAGCTTCGGTCCTTGGTTTCCTTAGCGCTCGAGCAATCGCAAGGTCCCATTCGGACGCAGACCGTAGCATTTGTTTACGGGCAGTTTTCCGTAAGTCGATTTGTGGCTGTTTCATCGTTTGTTTTATATACACCTGTCGGTCGGGAGGTAAAACATATACACATATTATACCCTTGAACGGTTCAAGTTCCGTCCTCAACTTCTACAGATATATACTACGTAACATAGGTGTTAATACCGTCTCCCT ************************************************.....(((((..(((((...((..(((((((((........))))))..((((.............))))............)))..)).)))))....((((.((((((....)))))).))))((((((...))))))...)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
....................................................................................................GAGTTGTCGCTGCTTCATCGT.................................................................................................................................	21	3	2	0.50	1	0	1	0	0
..................................................................................................TCAATTTGTGGATGTTTCAT....................................................................................................................................	20	2	2	0.50	1	1	0	0	0
......................................................................CGTTTGTTTCCGGGCAGTTT................................................................................................................................................................	20	2	3	0.33	1	0	0	1	0
.................................................................................................................................................................................................................AGATCTATACTACGTCA........................	17	2	16	0.06	1	0	0	0	1
..............................................................................TACGCGCAGTAGTCCGTAA.........................................................................................................................................................	19	3	20	0.05	1	0	0	0	1

Generated: 04/24/2015 at 09:32 AM