ID:

dsi_18368

 Coordinate:

3l:7921235-7921413 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-25.8 -25.7 -25.6

Flybase annnotation

exon [3l_7921058_7921234_+]; CDS [3l_7921058_7921234_+]; CDS [3l_7921414_7921559_+]; exon [3l_7921414_7921559_+]; intron [3l_7921235_7921413_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TACGTCTCACCACGCGTTCTCACGGATGTGCTCAACTATCTGAAGAATGCGTAAGTACTTTAGTATTAAATAAATTCTCCTGTGACATTCAAAAAATCACTTTCCAAAAGTCCTCCCGGTCTGAAAAGTTTTCAAGCTGATAAGGTGTAGTTTTTATAATTGCAATTAAGAAAGTCGATTTAAATCAGTTATGACCCGTTTTTTTTAATGTAACTTATTCCGTTTGCAGGGTAAGCCACGCCTACACCTGGAAGCTGATTAAGCCTCACATGGTGGCTG
**************************************************((((((....((.(((((((.(((.......(((((.......(((((((((((.......(((..((((.(((((...))))).))))...)))(((((((.....))))))).....)))))).)))))......))))).......))).)))))))))))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
..........CACGCGTTCTCACGGATG........................................................................................................................................................................................................................................................... 18 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
...................TCACGGATGTGCTCAACTATCC.............................................................................................................................................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................GCGCAAGTAGTTTAGTAGTAA.................................................................................................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................CTCACGGATGTGCTCAACTATCTGAAG.......................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................AATTAAGAAAGTCGATTTAAATCAGT.......................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................................................AGCTGATTAAGCCTCACATGGTGGC.. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................AAGTGCTCAACTATCAGAAGAA........................................................................................................................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................GTGCTCAACTATCTGAAG.......................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................GTGCTCAACTATCTGAAGA......................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................ACTGATGTGCTCAACTATCTGAAGA......................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................TGTGCTTAACTATCTGAAGAATGCGGT.................................................................................................................................................................................................................................. 27 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................GATTAAGCCTCACATGGT..... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................AGCCACGCCTACACCTGGAAGCTGA..................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTATAATTGCAGGTAAAAAAGTC....................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..........................TGTGCTCAACTATCTGAAG.......................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..............CGTCCTCACTGATGTGCTCAACTATC............................................................................................................................................................................................................................................... 26 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................GCCTACACCTGGAAGCTGATTAAGCCT............. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.............................GCTCAACTATCTGAAGA......................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............GCGTTCTCACGGATGTGCTCA..................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
..........................TGTGCTCAACTATCTGAAGAATGCGGTA................................................................................................................................................................................................................................. 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................TGTGCTCAACTATCAGAAGAAGA...................................................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................TGATGTGCTCAACTATCTGAAGAATGC..................................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CCATTGAGATCAGTTATGACC................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..............................CTAAACTATCTGAAGCATG...................................................................................................................................................................................................................................... 19 2 6 0.33 2 0 0 0 2 0 0 0 0 0 0
...............................................................................................................................................................................CGGTTTAGATCAGTCATGAC.................................................................................... 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................TACAAACTTTTCAAGCTGATA......................................................................................................................................... 21 3 12 0.08 1 0 0 0 0 0 1 0 0 0 0
..................................................GTAAGTAGTTTAGTGGTAAA................................................................................................................................................................................................................. 20 3 13 0.08 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................TTTCCAAAAGTCGTC.................................................................................................................................................................... 15 1 15 0.07 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................AAAAGTTTGAAAGCTGAT.......................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

ATGCAGAGTGGTGCGCAAGAGTGCCTACACGAGTTGATAGACTTCTTACGCATTCATGAAATCATAATTTATTTAAGAGGACACTGTAAGTTTTTTAGTGAAAGGTTTTCAGGAGGGCCAGACTTTTCAAAAGTTCGACTATTCCACATCAAAAATATTAACGTTAATTCTTTCAGCTAAATTTAGTCAATACTGGGCAAAAAAAATTACATTGAATAAGGCAAACGTCCCATTCGGTGCGGATGTGGACCTTCGACTAATTCGGAGTGTACCACCGAC
**************************************************((((((....((.(((((((.(((.......(((((.......(((((((((((.......(((..((((.(((((...))))).))))...)))(((((((.....))))))).....)))))).)))))......))))).......))).)))))))))))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
............................................................................................................TCAGGAAGGCCAGAC............................................................................................................................................................ 15 1 2 1.00 2 0 1 0 0 1 0 0 0 0
......................................................................................................AGGTGTTCAGGAGCGCTAGA............................................................................................................................................................. 20 3 4 1.00 4 3 0 0 0 0 0 1 0 0
.............................................................................................................CAGGAGGGCCAGACTTTTC....................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................AGGTGTTCAGGAGTGCTAGA............................................................................................................................................................. 20 3 9 1.00 9 8 0 0 0 0 0 1 0 0
............................................................................................................TCAGGATGGCCAGACT........................................................................................................................................................... 16 1 2 0.50 1 0 1 0 0 0 0 0 0 0
......................................................................................................AGGTGTTCAGGAGAGCCAGAT............................................................................................................................................................ 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0
......................................................................................................AGGTGGTCAGGAGTGCCAGA............................................................................................................................................................. 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................CATTGGGTGCGGATGTT................................ 17 2 8 0.25 2 0 1 0 0 0 1 0 0 0
.......................................................................................................................................................AAAATGTTAACGTTAGTTC............................................................................................................. 19 2 10 0.20 2 0 0 0 0 2 0 0 0 0
............................................................................................................................................................................................................................................GTGGCGATGTGGACCTT.......................... 17 2 14 0.14 2 0 0 0 2 0 0 0 0 0
...................................................................................................GCGAGGTTTTCAGGAGTGC................................................................................................................................................................. 19 3 9 0.11 1 0 0 1 0 0 0 0 0 0
......................................................................................................AGGTGGTCAGGAAGGCCAGA............................................................................................................................................................. 20 3 9 0.11 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................TTCCACATCACTAAGATTAA...................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 1
............................................................................................................TCAGGAAGGTCAGACTT.......................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................GGTGGGGATGTGAACCT........................... 17 2 12 0.08 1 0 0 0 0 0 1 0 0 0
...CAGATTGGTGCCCATGAG.................................................................................................................................................................................................................................................................. 18 3 13 0.08 1 0 0 0 0 0 0 0 1 0
.................................................................................................ACGAAAGGTTTTCAGGA..................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0
..............................................................................................................AGGAGGTCCAGACTCTACA...................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0
..ACAGAGTGCTGCCCAAG.................................................................................................................................................................................................................................................................... 17 3 20 0.05 1 0 0 0 0 0 1 0 0 0
...............................................................AAAATTTATTTAAGAGAAC..................................................................................................................................................................................................... 19 2 20 0.05 1 0 1 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:33 AM