ID:

dsi_18346

Coordinate:

2r:4777889-4778038 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-16.8	-16.5	-16.4

Flybase annnotation

intergenic

No Repeatable elements found

mature

star

Sense Strand Reads

GTCGTCACTCGAATACTTGGTGCATTGGTGTGTGCTCATTGAGCGCCTGGGTAAATATAATTAATGTTTTGTCATCAAACGCCCCATTTTGTCCATAGTTTTGTAAATTAACTGTTTTTGTTTGTTTTTTTTTTTTTTGCAAAAGTAATATGTTTTGTTGACGATAGAGGTGTGCAAATGCCAACAACTTTTCATTTGATATCGATATACCACCACTTGATGTAATCCGAGTCCAGAACCTCTTATCAAT ************************************************...............((((((.(((...(((((.....(((((.(((((((((((((............................)))))))))..........)))).)))))....)))))....))).))).)))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	GSM343915 embryo	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
...............CTTGGTGCATTGGTGTGT.........................................................................................................................................................................................................................	18	0	1	2.00	2	2	0	0	0	0	0	0	0
........................................................................................................AAATTCACTGTTTTCGTTTGTTGT..........................................................................................................................	24	3	1	1.00	1	0	1	0	0	0	0	0	0
.......CTCGAATACTTGGTGCATTGG..............................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0
...............................................................................................................CTGTTTTTGTTTGTTTTT.........................................................................................................................	18	0	6	0.33	2	0	0	0	2	0	0	0	0
........................................................................................................................................................................................................................................CCAGAACCTCTTACC...	15	1	6	0.17	1	0	0	0	0	0	1	0	0
.........................................................................................................................TTGTTTTTTTTTTTTTTGGAAAA..........................................................................................................	23	1	9	0.11	1	0	0	0	0	0	0	1	0
.......................................................................................................................................TTTGAAAAAGTCATCTGTTTT..............................................................................................	21	3	11	0.09	1	0	0	0	0	1	0	0	0
..............................................CTGGGTAAATAGAGTTGATG........................................................................................................................................................................................	20	3	16	0.06	1	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................GTAATCCGAGTCGAGGA............	17	2	16	0.06	1	0	0	0	0	1	0	0	0
.......................................................................................................................................................GTTTTGTTGACGAGA....................................................................................	15	1	16	0.06	1	0	0	0	0	1	0	0	0
....................................TATTGGGCGCCAGGGTAAA...................................................................................................................................................................................................	19	3	18	0.06	1	0	0	0	1	0	0	0	0
.........................................................................................TGTCCATGGTTTTGT..................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	1

Anti-sense strand reads

CAGCAGTGAGCTTATGAACCACGTAACCACACACGAGTAACTCGCGGACCCATTTATATTAATTACAAAACAGTAGTTTGCGGGGTAAAACAGGTATCAAAACATTTAATTGACAAAAACAAACAAAAAAAAAAAAAACGTTTTCATTATACAAAACAACTGCTATCTCCACACGTTTACGGTTGTTGAAAAGTAAACTATAGCTATATGGTGGTGAACTACATTAGGCTCAGGTCTTGGAGAATAGTTA ************************************************...............((((((.(((...(((((.....(((((.(((((((((((((............................)))))))))..........)))).)))))....)))))....))).))).)))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	O002 Head	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902009 testis	M025 embryo	SRR553486 Makindu_3 day-old ovaries
...................................................................................................................................................TATACAAAACAACTGCTATCTCCAC..............................................................................	25	0	1	2.00	2	2	0	0	0	0	0	0
............................................................................................................ATTGACAAAAACAAACAAAA..........................................................................................................................	20	0	1	2.00	2	0	2	0	0	0	0	0
..............................................................................TGCGGGGTAAAACAGGTATCAAAACAT.................................................................................................................................................	27	0	1	2.00	2	0	0	2	0	0	0	0
.............................................................................................................................................................AACTGCTATCTCCACACGTTT........................................................................	21	0	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................ACAAAACAACTGCTATCTC.................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0
......................................................................CAGTAGTTTGCGGGGTAA..................................................................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0
....................................................................................GTAAAACAGGTATCAAAA....................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................TGGTCGTGCACTACATTA........................	18	2	3	0.33	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................TATGGTTGCGAACTACAT..........................	18	2	4	0.25	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................GAAAAGTAAATTATAGCT.............................................	18	1	5	0.20	1	0	1	0	0	0	0	0
.................................................................................................................................................................................TCCGGTTGTTGAAAAGTGA......................................................	19	2	6	0.17	1	0	0	0	1	0	0	0
................................................................................................................................AAAAAAAAAAGGTTGTCATT......................................................................................................	20	2	12	0.08	1	0	0	0	0	1	0	0
..................................................................................................................AAAAACAAACAAAAAAAAA.....................................................................................................................	19	0	19	0.05	1	0	0	0	0	1	0	0
............................................................................................GGTATCAAAATATTT...............................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	1

Generated: 04/23/2015 at 03:10 AM