dsi_18308

exon [3l_16539565_16540459_+]; CDS [3l_16539565_16540459_+]; exon [3l_16538638_16539506_+]; CDS [3l_16538638_16539506_+]; intron [3l_16539507_16539564_+]

##################################################----------------------------------------------------------################################################## AACCGCTTCTCGTCGCCGCCACCGAACGCTGCTGAATTCGTGATTCACAAGTATGCTCAAGAAATGTTATTTAAACTTCAAATACTAATTAACCGATTTCTTCCCAAGGGGTCTATTGCGAGTGTTGGCCGCTCGCAAGGCAATGGTGGACGAAAAGG ************************************************........(((((((((((.(((............))).))))..)))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	GSM343915 embryo	M023 head	SRR553485 Chicharo_3 day-old ovaries	M053 female body	O001 Testis	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR618934 dsim w501 ovaries
..CCGCTTCTCGTCGCCGCCACC.......................................................................................................................................	21	0	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0
................................................................................................................CTATTGCGAGTGTTGGCC............................	18	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CGCAAGGCAATGGTGGAC.......	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
AACCGCTTCTCGTCGCCGC...........................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GTCTATTGCGAGTGTTGGC.............................	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................GAGTGTTGGCCGCTCGCAAGGCA................	23	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................TTGGCCGCTCGCAAGGCAAT..............	20	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................CCGAACGCTGCTGAATTCGTGATTCACA.............................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........CTCGTCGCCGCCACCGAAC...................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................CGCCACCGAACGCTGCTGAATT........................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................CGAACGCTGCTGAATTCG......................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................CGCTCGCAAGGCAATGGTGGACGAAAAG.	28	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................CAAGGCAATGGTGGAAGATGAG.	22	3	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............CCGCCACCGAACGCTGCTGAATTC.......................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................GTCTATTGCGAGTGTTGGCCGCTCG.......................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................ACGCTGCTGAATTCGTGATTCACA.............................................................................................................	24	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
....................ACCGAACGCTGCTGAATTCGTGAT..................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................TATGGTGAAGAAATCTTATTTAAA...................................................................................	24	3	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................CGAAAGGCAAGGGTGGAC.......	18	2	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
...................CACCGAACGGTTCTGAAGT........................................................................................................................	19	3	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1
.....CTTCTCGTCGCCGACA.........................................................................................................................................	16	1	12	0.08	1	0	0	0	0	1	0	0	0	0	0	0

TTGGCGAAGAGCAGCGGCGGTGGCTTGCGACGACTTAAGCACTAAGTGTTCATACGAGTTCTTTACAATAAATTTGAAGTTTATGATTAATTGGCTAAAGAAGGGTTCCCCAGATAACGCTCACAACCGGCGAGCGTTCCGTTACCACCTGCTTTTCC ************************************************........(((((((((((.(((............))).))))..)))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M024 male body	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries
..................................................................................................................................CGGGCGTTCCATTACCAC..........	18	2	4	0.25	1	0	1	0	0	0	0
.........AGCAGCGGCGGTGCCTCCCG.................................................................................................................................	20	3	6	0.17	1	0	0	1	0	0	0
..................................................................................................ACAAGGGTTCCCCAG.............................................	15	1	6	0.17	1	1	0	0	0	0	0
..................................................................................................AGAAGGGTTCGCCAG.............................................	15	1	8	0.13	1	1	0	0	0	0	0
...............................................................................TTTATGAGTAATGGGCTAGA...........................................................	20	3	9	0.11	1	0	0	0	0	1	0
.........................................................................................ACTGGCTAAAGAAGG......................................................	15	1	9	0.11	1	0	0	0	1	0	0
..........GCAGCGGCGGTGCCT.....................................................................................................................................	15	1	14	0.07	1	0	0	0	0	0	1
..........GCAGCGGCGCTAGCTTGTG.................................................................................................................................	19	3	20	0.05	1	0	0	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:16539457-16539614 +	dsi_18308	AACCGCTTCTCGTCGCCGCCACCGAACGCTGCTGAATTCGTGATTCACAAGTATGCTCAAGAAATGTT---------ATTTAAACT------------------------TCAAAT-ACTAAT-----------------------TAAC---CGATTT-C-TTCCCAAGGGGTCTATTGCGAGTGTTGGCCGCTCGCAAGGCAATGGTGGACGAAAAGG
droSec2	scaffold_0:9018295-9018452 +		AACCGCTTCTCGTCGCCGCCACCGAACGCTGCTGAATTCGTGATTCACAAGTATGGTCAAGAAAAGTT---------ACTTAAACT------------------------GCAAAT-ACTAAT-----------------------TAAC---TGATTT-C-TTCCCAAGGGGTCTATTGCGAGTGTTGGCCGCTCGCAAGGCAATGGTGGACGAAAAGG
dm3	chr3L:16956862-16957019 +		AACCGCTTCTCGTCGCCACCACCGAACGCTGCTGAATTCGTGATTCACAAGTATGGTCGAGAAAAATT---------ACTTAAACT------------------------TCAAAT-ACTAAT-----------------------TAAC---CAATTT-C-TTCCTAAGGGGTCTATTGCGAGTGTTGGCCGCTCGCAAGGCAATGGTGGACGAAAAGG
droEre2	scaffold_4784:16885859-16886015 -		AACCGATTCTCGTCGCCGCCTCCAAACGCTGCCGAATTCGTGATTCACAAGTAAGATCGGTAAAAGAT---------TTTTTAACT------------------------TTAAAT-ACTAAT-----------------------TTAA---AAATTC-C--TTCCCAGGGGTCTATTGCGAGTGTTGGCCGCTCGCAAGGCCATGGTGGACGAAAAGG
droYak3	3L:17118356-17118513 -		AACCGATTCTCGTCGCCGCCTCCAAACGCCGCTGAATTCGTGATTCACAAGTAAGACCGCAAAAAGAT---------ACTTTGACT------------------------TCAAAT-ACTAAT-----------------------TTAC---CGATTC-C-TTCGCAAGGGGTCTATTGAGAGTGTTGGCCGCTCGCAAGGCCATGGTAGACGAAAAGG
droEug1	scf7180000409711:381795-381953 -		AACCGTTTCTCGTCACCACCCCCGAACGCTGCTGAATTTGTGATCCACAAGTAAGAATCCTAGACATT---------ATTATTACT------------------------TCAAAT-TTTTAT-----------------------TTAA---CAATCC-ATCATTCCAGGGGTCTGATGCGTGTGTTGGCCGCCCGCAAAGCCATGGTTGACGACAAGG
droBia1	scf7180000302428:3155366-3155524 -		AACCGCTTCTCGTCGCCGCCTCCGAACGCTGCTGAATTCGTGATCCACAAGTAAGAACCACCCAAACC---------ATAAGCTCG------------------------TCATAT-ACTTAT-----------------------TTAT---CAATCT-ATCTTTTCAGGGGTCTGATGCGCGTGTTGGCCGCCCGCAAGGCCATGGTGGACGAGAAGG
droTak1	scf7180000415352:404855-404949 -		TATCACTTCTT-------------------------------------------------------------------------CT------------------------TCGAAT-ATTCAT-----------------------TTAC---TGATTG-CTTTTTCCAGGGGTCTTCTGCGCGTGTTGGCCGCCCGCAAGGCCATGGTGGACGACAAGA
droEle1	scf7180000491255:3392431-3392591 +		AACCGCTTCTCGTCGCCGCCCCCGAATGCCGCCGAATTCGTGATCCACAAGTAAGTCAAAGCA-AGCA-------CTAGCAATTAT------------------------ATAAAT-ACTAAT-----------------------TGATTA-TTTAAC-C-TTTTCCAGGGGTCTGATGCGCGTGTTGGCCGCCCGCAAGGCGATGGTGGACGAGAAGG
droRho1	scf7180000779902:114389-114547 -		AACCGCTTCTCTTCGCCGCCTCCGAACGCAGCTGAATTCGTGATCCACAAGTAAGACTAATTAACACC---------AATATTAAT------------------------TTCATT-ACTAAT-----------------------TGAA---TAATCC-CATTTTCCAGGGGTCTGATGCGCGTGTTGGCCGCTCGCAAGGCGATGGTTGATGACAAGC
droFic1	scf7180000454113:476176-476363 -		GAGATCTTCTCCAGTCCTCCGCCACCAGAGCACAAATTTGAGATGCACAAGTGAGTTGCACTAAAGAT---------TATATACCT---------ATTTA----------TTTTAT-TTATATATTAAAATCTTATAACTGTTATAATCCCT-TTACAT-C-CTTTTTAGGGGCATCCACCGCATCCTGGCGCTGCGCAAGCAGATGGTGCAGGACAAGG
droKik1	scf7180000302486:794689-794842 +		AACCGTTTCTCGTCGCCGCCACCCAATGCCGCGGAATTCGTGATCCACAAGTGAGTTTCTAGGAAGTA---------A-----TCC------------------------TTGGAT-TTTTAT-----------------------TTTA---ATATCT-CAATGTTTAGGGGTCTGCTCCGTGTGCTGGCCGCCCGCAAGGCGATGGTGGACGAGAAGA
droAna3	scaffold_13337:13665282-13665443 -		AACCGATTCTCGTCGCCCCCACCCAATGCCGCTGAATTCGTGATCCACAAGTAATCCAGAA----ACTGCGAAAACTACTTGATCT--------------TGTG-------------ACTAAC-----------------------CATC---CTATTCCC-ATTTTCAGGGGTCTGCTGCGTGTGTTGGCTGCCCGCAAGGCTATGGTTGATGAGAAGA
droBip1	scf7180000395832:606716-606874 -		AACCGATTCTCATCTCCACCACCCAATGCCGCTGAATTCGTGATCCACAAGTAATTAAGAG----ACTATT---CCTACCTGAGCT--------------TATG-------------ATTAAC-----------------------CATC---CAATTC-CTATTTCCAGGGGTCTGCTGCGTGTGCTGGCTGCCCGCAAGACTATGGTTGATGAGAAGA
dp5	XR_group8:4779426-4779591 +		AACCGTTTCTCCATGCCACCACCCAATGCCGCTGAATTCGTGATCCACAAGTGAGTTCCGCCTCAG----G---ACTGTTCGATTTATTATCGAGGCTT--------------------ATAT-----------------------GTGT-CCTTATTT---CCGTCTAGGGGTCTGATGCGTGTGTTGGCCGCCCGCAAGAACATGGTCGACGAGAAGA
droPer2	scaffold_29:399226-399397 +		GAGGTCTACTCGAGTCCGCCACCCAAGGAGCACAAGTTCGAGGTCCACAAGTAAGTCACCCTGCCAG---T---CCTGCCCTGCCCAAAGTCCATCCTTCT---------AGAGCC-ACTCAT-----------------------CG-----CGATC----TCTTCCAGGGGTATCCTGCGTATTCTGGCGCTGAGGAGAAAGCTGGTCGAGTCCAAGC
droWil2	scf2_1100000004511:1296523-1296685 +		AATCGTTTCTCATCGCCACCACCAAATGCGGCGGAATTCGTTATCCACAAGTGAGTTGTCCTGCATCT---------G---------GGATTTATTTTCATGTG-------------ATTAAT-----------------------CGCTA--CTCTTTCC-AATTTCAGGGGTTTGCTGCGTGTCTTGGCCGCCCGCAAGGCCATGGTGGACGAGAAAA
droVir3	scaffold_13049:10206900-10207068 -		AACCGTTTCTCGTCGCCACCACCAAATGCCGCTGAATTTGTCATTCACAAGTGAGTAGCCAA----CCGCGGT----G---------CCAGCTAACTTGGTCCAACTAATCCACAA-ACTAAT-----------------------TA--------TCT-T-TCGCGCAGGGGTCTCATGCGCGTTTTGGCCGCTCGCAAGGCCATGGTTGATGAGAAGG
droMoj3	scaffold_6680:10590347-10590509 +		AATCGTTTCTCTTCGCCACCACCCAATGCTGCAGAATTCGTTATTCACAAGTGAGTGAACCACACAAA-------CTAATCCGTAT------------------------AACAATTACCAAC-----------------------TGTGCT-CTATTC-C-TTATTCAGGGGTCTTATGCGTGTTTTGGCTGCTCGCAAAGCCATGGTTGATGAGAAGG
droGri2	scaffold_15110:9035543-9035701 +		AATCGTTTCTCGTCTCCACCACCCAATGCCGCTGAATTTGTCATTCACAAGTGAGTAGCAA----GCGGAT---CA-CATCACATC------------------------ACAAGC-AGAGAA-----------------------TTAT---CCTTTT-C-CTCTACAGGGGTCTGATGCGCGTTTTGGCCGCTCGCAAGGCGATGGTTGATGAGAAGG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AACCGCTTCTCGTCGCCGCCACCGAACGCTGCTGAATTCGTGATTCACAAGTATGCTCAAGAAATGTT---------ATTTAAACT------------------------TCAAAT-ACTAAT-----------------------TAAC---CGATTT-C-TTCCCAAGGGGTCTATTGCGAGTGTTGGCCGCTCGCAAGGCAATGGTGGACGAAAAGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..CCGCTTCTCGTCGCCGCCACC.....................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CTATTGCGAGTGTTGGCC............................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CGCAAGGCAATGGTGGAC.......	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
AACCGCTTCTCGTCGCCGC.........................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GTCTATTGCGAGTGTTGGC.............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................GAGTGTTGGCCGCTCGCAAGGCA................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TTGGCCGCTCGCAAGGCAAT..............	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................CCGAACGCTGCTGAATTCGTGATTCACA...........................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CTCGTCGCCGCCACCGAAC.................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CGCCACCGAACGCTGCTGAATT......................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CGAACGCTGCTGAATTCG....................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CGCTCGCAAGGCAATGGTGGACGAAAAG.	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............CCGCCACCGAACGCTGCTGAATTC.....................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GTCTATTGCGAGTGTTGGCCGCTCG.......................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACGCTGCTGAATTCGTGATTCACA...........................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ACCGAACGCTGCTGAATTCGTGAT................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AACCGCTTCTCGTCGCCGCCACCGAACGCTGCTGAATTCGTGATTCACAAGTATGGTCAAGAAAAGTT---------ACTTAAACT------------------------GCAAAT-ACTAAT-----------------------TAAC---TGATTT-C-TTCCCAAGGGGTCTATTGCGAGTGTTGGCCGCTCGCAAGGCAATGGTGGACGAAAAGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................................................................................................................................................AGTGTTGGCCGCTCGCAAGGCAATGGT...........	27	1	2.00	2	0	0	2	0
.ACCGCTTCTCGTCGCCGCCACC.....................................................................................................................................................................................................	22	1	2.00	2	0	1	1	0
...................................................................................................................................................................................................CGCAAGGCAATGGTGGAC.......	18	1	2.00	2	0	0	1	1
.......................................................................................................................................................................................GTGTTGGCCGCTCGCAAGGC.................	20	1	2.00	2	1	0	1	0
.......................................................................................................................................................................................GTGTTGGCCGCTCGCAAGG..................	19	1	2.00	2	0	0	2	0
..................................................................................................................................................................................................TCGCAAGGCAATGGTGGAC.......	19	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................GTGTTGGCCGCTCGCAAGGCA................	21	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................CGCAAGGCAATGGTGGACGAAAA..	23	1	1.00	1	0	0	1	0
.......TCTCGTCGCCGCCACCGAACGCTGC............................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................GTGTTGGCCGCTCGCAAGGCAAT..............	23	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................TCGCAAGGCAATGGTGGACGAAAAGG	26	1	1.00	1	0	0	0	1
..........CGTCGCCGCCACCGAACGCTGCTGAA........................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
...............................................................................................................................................................................................CGCTCGCAAGGCAATGGT...........	18	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................GTGTTGGCCGCTCGCAAGGCAATGGT...........	26	1	1.00	1	1	0	0	0
AACCGCTTCTCGTCGCCGCCACC.....................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
..........................................................................................................................................................................GGGTCTATTGCGAGTGTTGGCCGCT.........................	25	1	1.00	1	0	0	1	0
............TCGCCGCCACCGAACGCT..............................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
.............CGCCGCCACCGAACGCTGCTGA.........................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................GCAATGGTGGACGAAAAG.	18	1	1.00	1	0	0	1	0
.ACCGCTTCTCGTCGCCGCCACCGAACGCT..............................................................................................................................................................................................	29	1	1.00	1	1	0	0	0
..................................................................................................................................................................................TGCGAGTGTTGGCCGCTCGCAAGGC.................	25	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................GTTGGCCGCTCGCAAGGCAATGGTGG.........	26	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................GCAATGGTGGACGAAAAGG	19	1	1.00	1	0	0	1	0
...............................................................................................................................................................................TATTGCGAGTGTTGGCCGCT.........................	20	1	1.00	1	0	0	1	0
.......................GAACGCTGCTGAATTCGTG..................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
.......................GAACGCTGCTGAATTCGT...................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
................................................................................................................................................................................................GCTCGCAAGGCAATGGTGGACG......	22	1	1.00	1	1	0	0	0
........................AACGCTGCTGAATTCGTGATTCACA...........................................................................................................................................................................	25	1	1.00	1	0	0	0	1
......................................................................................................................................................................................AGTGTTGGCCGCTCGCAA....................	18	1	1.00	1	0	0	0	1
..................................................................................................................................................................................TGCGAGTGTTGGCCGCTCGCAAGGCA................	26	1	1.00	1	0	1	0	0
.................................GAATTCGTGATTCACAAGG........................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................GTTGGCCGCTCGCAAGGCAATGGTG..........	25	1	1.00	1	0	0	1	0
......................................................................................................................................................................................AGTGTTGGCCGCTCGCAAG...................	19	1	1.00	1	0	0	1	0

dm3

AACCGCTTCTCGTCGCCACCACCGAACGCTGCTGAATTCGTGATTCACAAGTATGGTCGAGAAAAATT---------ACTTAAACT------------------------TCAAAT-ACTAAT-----------------------TAAC---CAATTT-C-TTCCTAAGGGGTCTATTGCGAGTGTTGGCCGCTCGCAAGGCAATGGTGGACGAAAAGG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....GCTTCTCGTCGCCACCACC.....................................................................................................................................................................................................	19	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CAAGGCAATGGTGGACGAAAAG.	22	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ACCGCTTCTCGTCGCCACC........................................................................................................................................................................................................	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CGCCACCACCGAACGCTGCTGAA........................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CGTCGCCACCACCGAACGCTG.............................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CGCAAGGCAATGGTGGAC.......	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CAAGGCAATGGTGGACGAAA...	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................CTATTGCGAGTGTTGGCC............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CCGAACGCTGCTGAATTCGTGATTCAC............................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CGTCGCCACCACCGAACG................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CGAGTGTTGGCCGCTCGCAAGGCAA...............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CGCTGCTGAATTCGTGATTCACAA..........................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TGCGAGTGTTGGCCGCT.........................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACGCTGCTGAATTCGTGATATC.............................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AACCGATTCTCGTCGCCGCCTCCAAACGCTGCCGAATTCGTGATTCACAAGTAAGATCGGTAAAAGAT---------TTTTTAACT------------------------TTAAAT-ACTAAT-----------------------TTAA---AAATTC-C--TTCCCAGGGGTCTATTGCGAGTGTTGGCCGCTCGCAAGGCCATGGTGGACGAAAAGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................................GGGTCTATTGCGAGTGTTGGCC............................	22	1	2.00	2	2	0	0	0	0	0	0
....GATTCTCGTCGCCGCCTCC.....................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0
............................................................................................................................................................................GTCTATTGCGAGTGTTGGCCGC..........................	22	1	1.00	1	1	0	0	0	0	0	0
...........................GCTGCCGAATTCGTGATTCA.............................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.........TCGTCGCCGCCTCCAAAC.................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................ATTGCGAGTGTTGGCCGCTCGCAAGGCCA...............	29	1	1.00	1	1	0	0	0	0	0	0
.........................ACGCTGCCGAATTCGTGATTCA.............................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................TATTGCGAGTGTTGGCCGCTC........................	21	1	1.00	1	1	0	0	0	0	0	0
..........CGTCGCCGCCTCCAAACGCT..............................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................AGGCCATGGTGGACGAAAA..	19	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................ATTGCGAGTGTTGGCCGCTC........................	20	1	1.00	1	0	0	0	0	1	0	0
....GATTCTCGTCGCCGCCTCCA....................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................GTGTTGGCCGCTCGCAAGGC.................	20	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................GCTCGCAAGGCCATGGTGGA........	20	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................GCTCGCAAGGCCATGGTGGACGAAA...	25	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................TCGCAAGGCCATGGTGGAC.......	19	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................AGTGTTGGCCGCTCGCAA....................	18	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................GCTCGCAAGGCCATGGTGGAC.......	21	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................GAGTGTTGGCCGCTCGCAAG...................	20	1	1.00	1	0	0	0	1	0	0	0
.....................CCAAACGCTGCCGAATTCGTGATT...............................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
............................................................................................................................................................................GTCTATTGCGAGTGTTGGCCGCT.........................	23	1	1.00	1	0	0	0	0	0	1	0
.......................AAACGCTGCCGAATTCGTGATTCACA...........................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...........................GCTGCCGAATTCGTGATT...............................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
...........................GCTGCCGAATTCGTGATTCACAAG.........................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
....................TCCAAACGCTGCCGAATTCGTGATT...............................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................AGGCCATGGTGGACGAAA...	18	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................GCAAGGCCATGGTGGACGAAA...	21	1	1.00	1	0	0	0	0	1	0	0
...CGATTCTCGTCGCCGCCTCC.....................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................GGTCTATTGCGAGTGTTGGCCGCT.........................	24	1	1.00	1	1	0	0	0	0	0	0
............TCGCCGCCTCCAAACGCTGC............................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................CGCTCGCAAGGCCATGGTGGAC.......	22	1	1.00	1	0	1	0	0	0	0	0
.............................TGCCGAATTCGTGATTCACA...........................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................CGCAAGGCCATGGTGGAC.......	18	1	1.00	1	1	0	0	0	0	0	0
..........CGTCGCCGCCTCCAAACGCTGCCG..........................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
............................CTGCCGAATTCGTGATTCACAA..........................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................GCTCGCAAGGCCATGGTGGACG......	22	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................GGGTCTATTGCGAGTGTTGGCCGCTCGCA.....................	29	1	1.00	1	0	0	0	0	0	1	0
.................GCCTCCAAACGCTGCCGAATTCGTGATT...............................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
........CTCGTCGCCGCCTCCAAACGC...............................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
........................AACGCTGCCGAATTCGTGATTCAC............................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................GAGTGTTGGCCGCTCGCA.....................	18	1	1.00	1	1	0	0	0	0	0	0
.................................GAATTCGTGATTCACAAGGGT......................................................................................................................................................................	21	2	0.50	1	0	0	0	0	1	0	0

droYak3

AACCGATTCTCGTCGCCGCCTCCAAACGCCGCTGAATTCGTGATTCACAAGTAAGACCGCAAAAAGAT---------ACTTTGACT------------------------TCAAAT-ACTAAT-----------------------TTAC---CGATTC-C-TTCGCAAGGGGTCTATTGAGAGTGTTGGCCGCTCGCAAGGCCATGGTAGACGAAAAGG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
AACCGATTCTCGTCGCCGCCTCCAAACGC...............................................................................................................................................................................................	29	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4
................................................................................................................................................................................ATTGAGAGTGTTGGCCGCT.........................	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
............................................................................................................................................................................GTCTATTGAGAGTGTTGGCC............................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
....................................................................................................................................................................................................GCAAGGCCATGGTAGACGAAA...	21	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................AAGGCCATGGTAGACGAAA...	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................................................................................................................................................................................TTGAGAGTGTTGGCCGCTCGCAAGGCC................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AGGCCATGGTAGACGAAAAGG	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................AGGCCATGGTAGACGAAA...	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................GTCTATTGAGAGTGTTGGCCGCT.........................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........CTCGTCGCCGCCTCCAAA..................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................ATTGAGAGTGTTGGCCGCTCGCAAGGCC................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.ACCGATTCTCGTCGCCGCC........................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GGTCTATTGAGAGTGTTGGC.............................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......TTCTCGTCGCCGCCTCCAAA..................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................CGCCGCTGAATTCGTGATTCACAAG.........................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GGGTCTATTGAGAGTGTTGGCCGCT.........................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................AACGCCGCTGAATTCGTGA.................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................CTCCAAACGCCGCTGAATTCGTGATTC..............................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
AACCGATTCTCGTCGCCGC.........................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................CAAACGCCGCTGAATTCGTGATT...............................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
AACCGATTCTCGTCGCCGCCTC......................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....GATTCTCGTCGCCGCCTCCA....................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................GTCTATTGAGAGTGTTGGC.............................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....GATTCTCGTCGCCGCCTCCAAACGCC..............................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................TGAGAGTGTTGGCCGCTCGCAAGGCCA...............	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................TGGCCGCTCGCAAGGCCATGGTAGACGA.....	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................TTGAGAGTGTTGGCCGCTCGCAA....................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................AACGCCGCTGAATTCGTGAT................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................CTATTGAGAGTGTTGGCCGC..........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................AAACGCCGCTGAATTCGTGATT...............................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

AACCGTTTCTCGTCACCACCCCCGAACGCTGCTGAATTTGTGATCCACAAGTAAGAATCCTAGACATT---------ATTATTACT------------------------TCAAAT-TTTTAT-----------------------TTAA---CAATCC-ATCATTCCAGGGGTCTGATGCGTGTGTTGGCCGCCCGCAAAGCCATGGTTGACGACAAGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AACCGCTTCTCGTCGCCGCCTCCGAACGCTGCTGAATTCGTGATCCACAAGTAAGAACCACCCAAACC---------ATAAGCTCG------------------------TCATAT-ACTTAT-----------------------TTAT---CAATCT-ATCTTTTCAGGGGTCTGATGCGCGTGTTGGCCGCCCGCAAGGCCATGGTGGACGAGAAGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TATCACTTCTT-------------------------------------------------------------------------CT------------------------TCGAAT-ATTCAT-----------------------TTAC---TGATTG-CTTTTTCCAGGGGTCTTCTGCGCGTGTTGGCCGCCCGCAAGGCCATGGTGGACGACAAGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AACCGCTTCTCGTCGCCGCCCCCGAATGCCGCCGAATTCGTGATCCACAAGTAAGTCAAAGCA-AGCA-------CTAGCAATTAT------------------------ATAAAT-ACTAAT-----------------------TGATTA-TTTAAC-C-TTTTCCAGGGGTCTGATGCGCGTGTTGGCCGCCCGCAAGGCGATGGTGGACGAGAAGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AACCGCTTCTCTTCGCCGCCTCCGAACGCAGCTGAATTCGTGATCCACAAGTAAGACTAATTAACACC---------AATATTAAT------------------------TTCATT-ACTAAT-----------------------TGAA---TAATCC-CATTTTCCAGGGGTCTGATGCGCGTGTTGGCCGCTCGCAAGGCGATGGTTGATGACAAGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAGATCTTCTCCAGTCCTCCGCCACCAGAGCACAAATTTGAGATGCACAAGTGAGTTGCACTAAAGAT---------TATATACCT---------ATTTA----------TTTTAT-TTATATATTAAAATCTTATAACTGTTATAATCCCT-TTACAT-C-CTTTTTAGGGGCATCCACCGCATCCTGGCGCTGCGCAAGCAGATGGTGCAGGACAAGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AACCGTTTCTCGTCGCCGCCACCCAATGCCGCGGAATTCGTGATCCACAAGTGAGTTTCTAGGAAGTA---------A-----TCC------------------------TTGGAT-TTTTAT-----------------------TTTA---ATATCT-CAATGTTTAGGGGTCTGCTCCGTGTGCTGGCCGCCCGCAAGGCGATGGTGGACGAGAAGA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AACCGATTCTCGTCGCCCCCACCCAATGCCGCTGAATTCGTGATCCACAAGTAATCCAGAA----ACTGCGAAAACTACTTGATCT--------------TGTG-------------ACTAAC-----------------------CATC---CTATTCCC-ATTTTCAGGGGTCTGCTGCGTGTGTTGGCTGCCCGCAAGGCTATGGTTGATGAGAAGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................GCTATGGTTGATGAGAAGA	19	1	8.00	8	1	0	0	0	5	2
..........................................................................................................................................................................GGGTCTGCTGCGTGTGTTGGCT............................	22	1	7.00	7	2	0	0	0	0	5
...........................................................................................................................................................................GGTCTGCTGCGTGTGTTGGC.............................	20	1	6.00	6	3	0	0	0	1	2
..........................................................................................................................................................................GGGTCTGCTGCGTGTGTTGGC.............................	21	1	5.00	5	3	0	0	0	1	1
..........................................................................................................................................................................GGGTCTGCTGCGTGTGTTGGCTGCC.........................	25	1	5.00	5	0	0	0	0	0	5
................................................................................................................................................................................GCTGCGTGTGTTGGCTGCCC........................	20	1	5.00	5	3	0	0	0	2	0
...........................................................................................................................................................................GGTCTGCTGCGTGTGTTGGCTGC..........................	23	1	4.00	4	0	0	0	0	2	2
........................................................................................................................................................................................................GGCTATGGTTGATGAGAAGA	20	1	4.00	4	1	0	0	0	2	1
................................................................................................................................................................................GCTGCGTGTGTTGGCTGCCCGCAAG...................	25	1	4.00	4	3	0	0	0	0	1
......................................................................................................................................................................................TGTGTTGGCTGCCCGCAAG...................	19	1	3.00	3	3	0	0	0	0	0
.......................CAATGCCGCTGAATTCGTG..................................................................................................................................................................................	19	1	3.00	3	1	1	0	0	0	1
..........................TGCCGCTGAATTCGTGATCC..............................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0
............................................................................................................................................................................................GGCTGCCCGCAAGGCTATGGTTGATGA.....	27	1	3.00	3	2	1	0	0	0	0
.........................................................................................................................................................................................................GCTATGGTTGATGAGAAG.	18	1	3.00	3	1	0	0	0	1	1
................................................................................................................................................................................GCTGCGTGTGTTGGCTGC..........................	18	1	3.00	3	2	1	0	0	0	0
...................................................................................................................................................................................GCGTGTGTTGGCTGCCCGCAAG...................	22	1	3.00	3	3	0	0	0	0	0
.........TCGTCGCCCCCACCCAATGCC..............................................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0
.....................CCCAATGCCGCTGAATTCGTG..................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	3
...........................................................................................................................................................................GGTCTGCTGCGTGTGTTGGCTGCC.........................	24	1	3.00	3	2	0	0	0	0	1
.......TCTCGTCGCCCCCACCCAATGCCGCT...........................................................................................................................................................................................	26	1	2.00	2	1	0	0	0	0	1
........................AATGCCGCTGAATTCGTGATCC..............................................................................................................................................................................	22	1	2.00	2	0	0	0	0	1	1
...........................GCCGCTGAATTCGTGATCC..............................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.....................CCCAATGCCGCTGAATTCGT...................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	1	1
.................CCCACCCAATGCCGCTGAATTCGTGATC...............................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
..................CCACCCAATGCCGCTGAATTCGTGATCC..............................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................TGCTGCGTGTGTTGGCTGCCCGCAAGGC.................	28	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................GGTCTGCTGCGTGTGTTGGCTGCCC........................	25	1	2.00	2	1	0	0	0	1	0
...............................................................................................................................................................................................TGCCCGCAAGGCTATGGTTGATGA.....	24	1	2.00	2	2	0	0	0	0	0
.........TCGTCGCCCCCACCCAATGCCGCTGAA........................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................TGCGTGTGTTGGCTGCCC........................	18	1	2.00	2	2	0	0	0	0	0
...................CACCCAATGCCGCTGAATTCGTG..................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	0	1
....GATTCTCGTCGCCCCCACCCAATGCCG.............................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................GTCTGCTGCGTGTGTTGGCTGCCCGC......................	26	1	1.00	1	1	0	0	0	0	0
...................CACCCAATGCCGCTGAATTCGTGA.................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
........................AATGCCGCTGAATTCGTGATCCACAAG.........................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
................................TGAATTCGTGATCCACAAGGGT......................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................GCCCGCAAGGCTATGGTTGATGAGAA..	26	1	1.00	1	1	0	0	0	0	0
........................AATGCCGCTGAATTCGTGATCCA.............................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......TTCTCGTCGCCCCCACCCAATGCCGC............................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................TGTGTTGGCTGCCCGCAAGGCTATG.............	25	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................TGGCTGCCCGCAAGGCTATG.............	20	1	1.00	1	0	0	0	1	0	0
.................CCCACCCAATGCCGCTGAATTCGT...................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................GCCCGCAAGGCTATGGTTGATGAGAAG.	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................CTGCTGCGTGTGTTGGCTGC..........................	20	1	1.00	1	1	0	0	0	0	0
....GATTCTCGTCGCCCCCACCCAATGCCGCT...........................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................TGCTGCGTGTGTTGGCTGCCC........................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................GGCTATGGTTGATGAGAAG.	19	1	1.00	1	0	0	0	0	1	0
.............CGCCCCCACCCAATGCCGCTGAA........................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.........................ATGCCGCTGAATTCGTGATCCACAAG.........................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................CGTGTGTTGGCTGCCCGCA.....................	19	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................CTGCGTGTGTTGGCTGCC.........................	18	1	1.00	1	1	0	0	0	0	0
..........................TGCCGCTGAATTCGTGATCCAC............................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.......TCTCGTCGCCCCCACCCAATGCCG.............................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................GCTGAATTCGTGATCCACAA..........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................CTGCTGCGTGTGTTGGCTGCCCGCA.....................	25	1	1.00	1	1	0	0	0	0	0
..............GCCCCCACCCAATGCCGCTGA.........................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................TCTGCTGCGTGTGTTGGCTGCC.........................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................TGCTGCGTGTGTTGGCTGCCCGCAAGGCT................	29	1	1.00	1	1	0	0	0	0	0
....GATTCTCGTCGCCCCCACCCAAT.................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................CAATGCCGCTGAATTCGTGATC...............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................TGCGTGTGTTGGCTGCCCGCAAG...................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................GCCCGCAAGGCTATGGTTGATG......	22	1	1.00	1	1	0	0	0	0	0
.................................GAATTCGTGATCCACAAG.........................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
........................AATGCCGCTGAATTCGTG..................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................GTCTGCTGCGTGTGTTGGC.............................	19	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................TTGGCTGCCCGCAAGGCTATGGTT..........	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................AAGGCTATGGTTGATGAGAAG.	21	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................GCTGCGTGTGTTGGCTGCC.........................	19	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................TGCTGCGTGTGTTGGCTG...........................	18	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................GCTGCGTGTGTTGGCTGCCCGCAAGG..................	26	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................TGCGTGTGTTGGCTGCCCGCAAGGCT................	26	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................GGGTCTGCTGCGTGTGTTG...............................	19	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................GGTCTGCTGCGTGTGTTGGCT............................	21	1	1.00	1	1	0	0	0	0	0
.....ATTCTCGTCGCCCCCACCCAATGCCGCT...........................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.......................CAATGCCGCTGAATTCGTGATCCACAA..........................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.......................................................................................................G-------------ACTAAC-----------------------CATC---CTATTCCC-AT........................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................TGCGTGTGTTGGCTGCCCGCAAGGC.................	25	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................GGTCTGCTGCGTGTGTTGGCTGCCCGCA.....................	28	1	1.00	1	1	0	0	0	0	0
.ACCGATTCTCGTCGCCCCCACCCAATGC...............................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..............GCCCCCACCCAATGCCGCT...........................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................GTTGGCTGCCCGCAAGGCTA...............	20	1	1.00	1	1	0	0	0	0	0
.......................CAATGCCGCTGAATTCGT...................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................GTCTGCTGCGTGTGTTGGCT............................	20	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................TGCTGCGTGTGTTGGCTGCCCGCAA....................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................TGCGTGTGTTGGCTGCCCGCA.....................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................GCTGCGTGTGTTGGCTGCCCG.......................	21	1	1.00	1	1	0	0	0	0	0
............TCGCCCCCACCCAATGCCGCTGAA........................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................GCCCGCAAGGCTATGGTTGATGAG....	24	1	1.00	1	1	0	0	0	0	0
..............GCCCCCACCCAATGCCGCTG..........................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................CCCAATGCCGCTGAATTCGTGATCCACAA..........................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
....GATTCTCGTCGCCCCCACCCAATGCCGC............................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................GGCTGCCCGCAAGGCTATGGTTGAT.......	25	1	1.00	1	1	0	0	0	0	0
..................CCACCCAATGCCGCTGAATTCGTGA.................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.........................ATGCCGCTGAATTCGTGATCCACA...........................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................AGGCTATGGTTGATGAGA...	18	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................GTTGGCTGCCCGCAAGGCTAT..............	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................GTCTGCTGCGTGTGTTGGCTGCCCGCAA....................	28	1	1.00	1	1	0	0	0	0	0
.........TCGTCGCCCCCACCCAATGCCGCTG..........................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................TGCTGCGTGTGTTGGCTGCC.........................	20	1	1.00	1	0	0	0	0	1	0
....................ACCCAATGCCGCTGAATTCGTG..................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................GCTGAATTCGTGATCCACAAG.........................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................GCGTGTGTTGGCTGCCCG.......................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................GCGTGTGTTGGCTGCCCGC......................	19	1	1.00	1	1	0	0	0	0	0
...........GTCGCCCCCACCCAATGCCGCTGAA........................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................TCTGCTGCGTGTGTTGGCTGCCCGCA.....................	26	1	1.00	1	1	0	0	0	0	0
............................CCGCTGAATTCGTGATCCA.............................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................GGGTCTGCTGCGTGTGTTGG..............................	20	1	1.00	1	1	0	0	0	0	0
...CGATTCTCGTCGCCCCCACCCAATGCCGC............................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
...............CCCCCACCCAATGCCGCTGAATTCG....................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................GTGTGTTGGCTGCCCGCAAGGCT................	23	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................GTGTGTTGGCTGCCCGCAAGG..................	21	1	1.00	1	0	0	0	0	1	0

droBip1

AACCGATTCTCATCTCCACCACCCAATGCCGCTGAATTCGTGATCCACAAGTAATTAAGAG----ACTATT---CCTACCTGAGCT--------------TATG-------------ATTAAC-----------------------CATC---CAATTC-CTATTTCCAGGGGTCTGCTGCGTGTGCTGGCTGCCCGCAAGACTATGGTTGATGAGAAGA	Size	Hit Count	Total Norm	Total
No Reads

dp5

AACCGTTTCTCCATGCCACCACCCAATGCCGCTGAATTCGTGATCCACAAGTGAGTTCCGCCTCAG----G---ACTGTTCGATTTATTATCGAGGCTT--------------------ATAT-----------------------GTGT-CCTTATTT---CCGTCTAGGGGTCTGATGCGTGTGTTGGCCGCCCGCAAGAACATGGTCGACGAGAAGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................GGGTCTGATGCGTGTGTTGGCC............................	22	1	4.00	4	0	2	0	0	0	1	1	0	0	0
...........................................................................................................................................................................GGTCTGATGCGTGTGTTGGCC............................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................GATGCGTGTGTTGGCCGCCCGCA.....................	23	1	2.00	2	0	0	0	0	0	1	1	0	0	0
..............................GCTGAATTCGTGATCCACAA..........................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................GTCTGATGCGTGTGTTGGCC............................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GGTCTGATGCGTGTGTTGGCCGCC.........................	24	1	2.00	2	0	1	0	1	0	0	0	0	0	0
..........................................................................................................................................................................GGGTCTGATGCGTGTGTTGGCCGCC.........................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................GTCTGATGCGTGTGTTGGC.............................	19	1	2.00	2	0	1	0	0	1	0	0	0	0	0
..........................TGCCGCTGAATTCGTGATC...............................................................................................................................................................................	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................GAACATGGTCGACGAGAAGA	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................GAATTCGTGATCCACAAGG........................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........................GCCGCTGAATTCGTGATCC..............................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GGGTCTGATGCGTGTGTTGGC.............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GGGTCTGATGCGTGTGTT................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GGGTCTGATGCGTGTGTTGGCCGC..........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GCCCGCAAGAACATGGTCGAC.......	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GTGTGTTGGCCGCCCGCAA....................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GAACATGGTCGACGAGAAG.	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................GATGCGTGTGTTGGCCGCCCGCAAG...................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................ATGCCGCTGAATTCGTGATCCACA...........................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GCAAGAACATGGTCGACGAGAA..	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................CACCACCCAATGCCGCTG..........................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................GTCTGATGCGTGTGTTGGCCGCC.........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................CACCCAATGCCGCTGAATT......................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................CGCCCGCAAGAACATGGTC..........	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................AATGCCGCTGAATTCGTGATCC..............................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TGTGTTGGCCGCCCGCAAGAACA...............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................ATGCGTGTGTTGGCCGCCCGCAA....................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................CTGATGCGTGTGTTGGCCGCCCGCA.....................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................GCTGAATTCGTGATCCACAG..........................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AGAACATGGTCGACGAGA...	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................CCCAATGCCGCTGAATTCGTGATCCAC............................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CCGCAAGAACATGGTCGACGAG....	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GGGTCTGATGCGTGTGTTGGCCGCCC........................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................CACCACCCAATGCCGCTGAATTCGTG..................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................TGTTGGCCGCCCGCAAGAACATG.............	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................TGATGCGTGTGTTGGCCGCCC........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CGCAAGAACATGGTCGACGA.....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TGATGCGTGTGTTGGCCGCCCGC......................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................GCTGAATTCGTGATCCAC............................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AACATGGTCGACGAGAAG.	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........CATGCCACCACCCAATGCCGCTG..........................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................AATGCCGCTGAATTCGTGATC...............................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GGGTCTGATGCGTGTGTTGGCCG...........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................GCCGCTGAATTCGTGATCCA.............................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CAAGAACATGGTCGACGAGAA..	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................CAAGAACATGGTCGACGAG....	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................AGAACATGGTCGACGAGAA..	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GGTCTGATGCGTGTGTTGGC.............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................GCTGAATTCGTGATCCACA...........................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................TCTGATGCGTGTGTTGGCC............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GAGGTCTACTCGAGTCCGCCACCCAAGGAGCACAAGTTCGAGGTCCACAAGTAAGTCACCCTGCCAG---T---CCTGCCCTGCCCAAAGTCCATCCTTCT---------AGAGCC-ACTCAT-----------------------CG-----CGATC----TCTTCCAGGGGTATCCTGCGTATTCTGGCGCTGAGGAGAAAGCTGGTCGAGTCCAAGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

AATCGTTTCTCATCGCCACCACCAAATGCGGCGGAATTCGTTATCCACAAGTGAGTTGTCCTGCATCT---------G---------GGATTTATTTTCATGTG-------------ATTAAT-----------------------CGCTA--CTCTTTCC-AATTTCAGGGGTTTGCTGCGTGTCTTGGCCGCCCGCAAGGCCATGGTGGACGAGAAAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................AAATGCGGCGGAATTCGTT..................................................................................................................................................................................	19	1	2.00	2	0	0	1	1	0
..........................TGCGGCGGAATTCGTTATCCACA...........................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0
.ATCGTTTCTCATCGCCACCACC.....................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0
..........CATCGCCACCACCAAATGCGGCGGA.........................................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0
........................AATGCGGCGGAATTCGTTATCCACA...........................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0
.....................CCAAATGCGGCGGAATTCGTT..................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
........................AATGCGGCGGAATTCGTTA.................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
............................CGGCGGAATTCGTTATCCACA...........................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
........................AATGCGGCGGAATTCGTTATCCACAAG.........................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................GTGTCTTGGCCGCCCGCAAGGC.................	22	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................CAAGGCCATGGTGGACGAGA...	20	1	1.00	1	0	1	0	0	0
...................CACCAAATGCGGCGGAATTCGTT..................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.........................ATGCGGCGGAATTCGTTATCCA.............................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.ATCGTTTCTCATCGCCACCACCA....................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
..........................TGCGGCGGAATTCGTTATCCA.............................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................CGCAAGGCCATGGTGGACG......	19	1	1.00	1	0	0	1	0	0
..........CATCGCCACCACCAAATGCGGCG...........................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.....TTTCTCATCGCCACCACCAAATGCGGC............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1
.ATCGTTTCTCATCGCCACCAC......................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...CGTTTCTCATCGCCACCACC.....................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.........................ATGCGGCGGAATTCGTTATC...............................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
....................ACCAAATGCGGCGGAATTC.....................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
........................AATGCGGCGGAATTCGTTATCCA.............................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................CCGCCCGCAAGGCCATGGTGGACGAGAA..	28	1	1.00	1	0	0	1	0	0
......................CAAATGCGGCGGAATTCGTT..................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.......................AAATGCGGCGGAATTCGTTATCCAC............................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................................CGCCCGCAAGGCCATGGTGGACGAGAAA.	28	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................GTTTGCTGCGTGTCTTGGCC............................	20	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................GCTGCGTGTCTTGGCCGC..........................	18	1	1.00	1	0	0	0	1	0
.............CGCCACCACCAAATGCGGC............................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0

droVir3

AACCGTTTCTCGTCGCCACCACCAAATGCCGCTGAATTTGTCATTCACAAGTGAGTAGCCAA----CCGCGGT----G---------CCAGCTAACTTGGTCCAACTAATCCACAA-ACTAAT-----------------------TA--------TCT-T-TCGCGCAGGGGTCTCATGCGCGTTTTGGCCGCTCGCAAGGCCATGGTTGATGAGAAGG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....GTTTCTCGTCGCCACCACC.....................................................................................................................................................................................................	19	1	7.00	7	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................TGCGCGTTTTGGCCGCTCGCA.....................	21	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ACCGTTTCTCGTCGCCACC........................................................................................................................................................................................................	19	1	4.00	4	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GGGTCTCATGCGCGTTTTGGC.............................	21	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AATGCCGCTGAATTTGTCA.................................................................................................................................................................................	19	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AACCGTTTCTCGTCGCCACCACCA....................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................ACCACCAAATGCCGCTGAATTTGTCA.................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AATGCCGCTGAATTTGTCATTCA.............................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ACCAAATGCCGCTGAATTTGTCA.................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ACCGTTTCTCGTCGCCACCACCA....................................................................................................................................................................................................	23	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TCTCATGCGCGTTTTGGCC............................	19	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GCCATGGTTGATGAGAAG.	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................ATGCGCGTTTTGGCCGCTCGCA.....................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CGCTCGCAAGGCCATGGTTGATGAGA...	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TTTTGGCCGCTCGCAAGGC.................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CCACCAAATGCCGCTGAATTTGT...................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ACCAAATGCCGCTGAATTTGTC..................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................ATGCGCGTTTTGGCCGCTC........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TTTCTCGTCGCCACCACC.....................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GGTCTCATGCGCGTTTTGGCCGCTC........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ACCACCAAATGCCGCTGAATTTGTC..................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTTTCTCGTCGCCACC........................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................AATGCCGCTGAATTTGTCATTCACAAG.........................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CGCTCGCAAGGCCATGGTTGATGAGAA..	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................TGCCGCTGAATTTGTCATTC..............................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GTCTCATGCGCGTTTTGGCCG...........................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ATGCCGCTGAATTTGTCATT...............................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AAATGCCGCTGAATTTGTCAT................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CGCAAGGCCATGGTTGATGAGAAG.	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CCAAATGCCGCTGAATTTGTC..................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................AAATGCCGCTGAATTTGTCATTCACA...........................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GCCGCTGAATTTGTCATTCA.............................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TGCGCGTTTTGGCCGCTCGCAC....................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GCTCGCAAGGCCATGGTTGATGAGA...	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CGCTCGCAAGGCCATGGTTG.........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AATGCCGCTGAATTTGTC..................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CACCACCAAATGCCGCTGA.........................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AATGCCGCTGAATTTGTCATTCACA...........................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CGCCACCACCAAATGCCGCTGAATTTGTC..................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TGTCATTCACAAGTGAGTAGCCA...............................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ACCGTTTCTCGTCGCCACCACC.....................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TGCGCGTTTTGGCCGCTCGC......................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TCGTCGCCACCACCAAATGCCGCT...........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CCAAATGCCGCTGAATTTGTCA.................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AAATGCCGCTGAATTTGTCA.................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CGCGTTTTGGCCGCTCGCA.....................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTTTCTCGTCGCCACCACCA....................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AACCGTTTCTCGTCGCCAC.........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................CATGCGCGTTTTGGCCGCTCGCA.....................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CGCCACCACCAAATGCCGC............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TCATGCGCGTTTTGGCCGCT.........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CACCACCAAATGCCGCTGAATTTGT...................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GTTTTGGCCGCTCGCAAGGCCATGGTT..........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ACCACCAAATGCCGCTGAATTTGT...................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GCAAGGCCATGGTTGATGAG....	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CGCAAGGCCATGGTTGATGAGAA..	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AAATGCCGCTGAATTTGTCATT...............................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AATGCCGCTGAATTTGTCAT................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GGCCATGGTTGATGAGAA..	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AAATGCCGCTGAATTTGTCATTCA.............................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AACCGTTTCTCGTCGCCACCACC.....................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TTTCTCGTCGCCACCACCAAATGCC..............................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AATGCCGCTGAATTTGTCATTCACAA..........................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CGCCACCACCAAATGCCGCT...........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CGTTTCTCGTCGCCACCACCAA...................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CGCTCGCAAGGCCATGGTT..........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CTCGTCGCCACCACCAAA..................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CAAATGCCGCTGAATTTGTC..................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGCCGCTGAATTTGTCATTCAC............................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CTCATGCGCGTTTTGGCCGCT.........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAGGCCATGGTTGATGAG....	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AATCGTTTCTCTTCGCCACCACCCAATGCTGCAGAATTCGTTATTCACAAGTGAGTGAACCACACAAA-------CTAATCCGTAT------------------------AACAATTACCAAC-----------------------TGTGCT-CTATTC-C-TTATTCAGGGGTCTTATGCGTGTTTTGGCTGCTCGCAAAGCCATGGTTGATGAGAAGG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................................................AGCCATGGTTGATGAGAAG.	19	1	2.00	2	0	0	0	0	0	2
............TCGCCACCACCCAATGCTGCA...........................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................TCTTATGCGTGTTTTGGCTGCTCGCA.....................	26	1	1.00	1	1	0	0	0	0	0
........................AATGCTGCAGAATTCGTTA.................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................GGGTCTTATGCGTGTTTTGGC.............................	21	1	1.00	1	0	0	0	0	0	1
.................ACCACCCAATGCTGCAGAATTCGTT..................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.........................ATGCTGCAGAATTCGTTATTCACA...........................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................ATGCGTGTTTTGGCTGCTCGCAAAGC.................	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................TGCGTGTTTTGGCTGCTCGCAAA...................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................GCTCGCAAAGCCATGGTTGA........	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................GGTCTTATGCGTGTTTTGGC.............................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................TACCAAC-----------------------TGTGCT-CTATTC-C-TTATTCAG..................................................	28	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................CTTATGCGTGTTTTGGCTGCT.........................	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................GTTTTGGCTGCTCGCAAA...................	18	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................GGCTGCTCGCAAAGCCATG.............	19	1	1.00	1	1	0	0	0	0	0

droGri2

AATCGTTTCTCGTCTCCACCACCCAATGCCGCTGAATTTGTCATTCACAAGTGAGTAGCAA----GCGGAT---CA-CATCACATC------------------------ACAAGC-AGAGAA-----------------------TTAT---CCTTTT-C-CTCTACAGGGGTCTGATGCGCGTTTTGGCCGCTCGCAAGGCGATGGTTGATGAGAAGG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_18308

3l:16539507-16539564 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads