ID:

dsi_18297

 Coordinate:

3l:15689667-15689816 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_15689580_15689666_+]; CDS [3l_15689580_15689666_+]; intron [3l_15689667_15692625_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAAGAAGAGCTATGGAACGCAAGCTTTCCGAGTTGGAAGAAGAGCTCAAGGTAATTACAAAAGTGTCCTTTGCTAACCGTAAGCGTTAAAAGTGCCGCCGCTGTTGCTGTTTTTGTGTTCTGAGAACAGGACCCCCACATTGATTGCTATATTGGTTTATTTTTATTTTGATTCCATTCCCCACATGATTTGTCCAAGAGTTTGTGATACTTTTCCCCCAGAAAAGCCTTGTTGCATGTCTCAAATTCTG
**************************************************....((((((..((((.............(((....((((((((..((((.(((.((.(((..(((((((((....))))))....)))..))).)).))).)))).))))))))..)))............))))...)))).....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
......GAGCTATGGAACGCAAGCTTTCCGAGTT........................................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0
..........................................................................................................................................GTTGATTGCTATAATGGT.............................................................................................. 18 2 4 0.25 1 1 0 0 0
......................................................................................................................................................................TTTGATTCCATTCCCCC................................................................... 17 1 5 0.20 1 0 1 0 0
................................................................................................................................................................................TACCCCACATGATTCGGCC....................................................... 19 3 7 0.14 1 0 0 1 0
..........................................................................................AGTGCTGCCGCTGTTG................................................................................................................................................ 16 1 20 0.05 1 0 0 0 1

Anti-sense strand reads

TTTCTTCTCGATACCTTGCGTTCGAAAGGCTCAACCTTCTTCTCGAGTTCCATTAATGTTTTCACAGGAAACGATTGGCATTCGCAATTTTCACGGCGGCGACAACGACAAAAACACAAGACTCTTGTCCTGGGGGTGTAACTAACGATATAACCAAATAAAAATAAAACTAAGGTAAGGGGTGTACTAAACAGGTTCTCAAACACTATGAAAAGGGGGTCTTTTCGGAACAACGTACAGAGTTTAAGAC
**************************************************....((((((..((((.............(((....((((((((..((((.(((.((.(((..(((((((((....))))))....)))..))).)).))).)))).))))))))..)))............))))...)))).....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
......................................................................................................................................................TAACCAAATAAAAATAAA.................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................GCGGAGACAACGACAAATACA...................................................................................................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.....................................TCTTATCCAGTTCCATTAA.................................................................................................................................................................................................. 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.....................................TCTTATCCAGTTCCAGTAA.................................................................................................................................................................................................. 19 3 20 0.50 10 0 0 0 5 0 0 4 0 1 0
............................................................................................ACGGCGGCGACAACG............................................................................................................................................... 15 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0
..............CTTGAGTTCCAAAGGCGCAA........................................................................................................................................................................................................................ 20 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0
.....................................TCTTCGCGAGTTCCAT..................................................................................................................................................................................................... 16 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0
...................................................................................GCAATGCTCAGGGCGGCG..................................................................................................................................................... 18 3 20 0.10 2 0 0 0 0 0 0 0 2 0 0
.......TCGATAGCTTCCGTTCG.................................................................................................................................................................................................................................. 17 2 15 0.07 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................GAAATAAAAAGAAAATTAAGGT.......................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................ATAAAACTAAGGAAAG....................................................................... 16 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Generated: 04/23/2015 at 06:07 PM