dsi_18292

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+

GACAGATGAAACGAAGAACAATAACTACAGCAACGGCCACAACAACAAAGGCATGAACAGCAGCAACAATAATTTTAATAACGATAATAGCCACAATAGCAACTACAACAATTACGGTTACAACAGCAGCAGCTATCGTTACAGTTACCGTTACCGTTACCGTTGCCCTTACACTTACACTTACAATTACGTTCACGAGTCCCGTTTTTTTTTCAGTGCGTGCGTGTATGTGAAATTGTTATTATTAACAACAACAAAAACAACAT ************************************************...(((((....((.........................)).......(((((...(((....(((((.((((((((....)))...)))...)).)))))....)))...)))))........................))))).....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.............................................................................................................................................................................................................................GCGTGTATGTGAAATTGTTATTATT....................	25	0	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................GTACGTGAAATTGTT..........................	15	1	9	0.78	7	0	1	3	2	1
..................................................................................................................................AGCGATCGAAACAGTTACC.....................................................................................................................	19	3	20	0.30	6	0	6	0	0	0
..........................................................................................................................ACAGCAGCGGCTATAGTGA.............................................................................................................................	19	3	20	0.05	1	0	1	0	0	0
.......................ACTACAGCAGCGGCC....................................................................................................................................................................................................................................	15	1	20	0.05	1	0	1	0	0	0
.......................................TAACGAGAAAGGCATGAAC................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1

CTGTCTACTTTGCTTCTTGTTATTGATGTCGTTGCCGGTGTTGTTGTTTCCGTACTTGTCGTCGTTGTTATTAAAATTATTGCTATTATCGGTGTTATCGTTGATGTTGTTAATGCCAATGTTGTCGTCGTCGATAGCAATGTCAATGGCAATGGCAATGGCAACGGGAATGTGAATGTGAATGTTAATGCAAGTGCTCAGGGCAAAAAAAAAGTCACGCACGCACATACACTTTAACAATAATAATTGTTGTTGTTTTTGTTGTA ************************************************...(((((....((.........................)).......(((((...(((....(((((.((((((((....)))...)))...)).)))))....)))...)))))........................))))).....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
...................TTATTGATGTCGTTGCCG.....................................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................ACGCACGCACATACACTT................................	18	0	1	1.00	1	1	0	0	0	0	0
.........TTGCTTCCTGTTATTGATGT.............................................................................................................................................................................................................................................	20	1	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................ATGTGAATGTGAATGTTAATGCAAGT.......................................................................	26	0	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................ACAATATTAATTGTTGT.............	17	1	7	0.29	2	0	0	1	0	1	0
............................................................................................................................................................................................................................................ACAATATTAATTGTTGTTG...........	19	1	4	0.25	1	0	1	0	0	0	0
.............................................................................................................................................................................................GCATGTACTCAGGGCAA............................................................	17	2	5	0.20	1	0	0	0	1	0	0
....................................................................................................................................................................................................................................................AATTGTTGTTGTTTTT......	16	0	8	0.13	1	0	1	0	0	0	0
.........TTGCTTCTTATTATTG.................................................................................................................................................................................................................................................	16	1	9	0.11	1	0	0	1	0	0	0
....................................................................................................................................................................................TATGGTAATGCGAGTGCTC...................................................................	19	3	10	0.10	1	0	0	0	1	0	0
............................................................................................................................................................................................................................................ACAATATTAATTGTTG..............	16	1	13	0.08	1	0	0	0	0	0	1
.......................................................................................................................................................................................GGTAATGCGAGTGCTC...................................................................	16	2	14	0.07	1	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................TGTTGTTTTTGTTGT.	15	0	20	0.05	1	0	1	0	0	0	0
.......................TGATGTCGTCGCCGGTAT.................................................................................................................................................................................................................................	18	2	20	0.05	1	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	x:4908938-4909203 +	dsi_18292	GA-CAGATGAAACGAAGAACAATAACTACAGCAACGGCCACAACAA---CAAAGGCATG----AACAG---CAGCA------------ACAATAA-TTTTAATAA------------CGATAA-------TAGCCACAAT--AGCAAC-----------------------------------------------TACAACAATTACGGT---TACAACAGCA------------------G-------------------------------------------------------------------------------------------------------CAGCTA------TCGTTACAGTTACCGTTACCG----TTACC------GTTGCC--------------------------------CTTACAC---T---TACA--CTTACAATTACGTTCA--------------CGAGTCCCGTT-----TTTTTTTCAG-TGCGTG------CG--TGTATGTGAAA-------------------TTGTTATTATTAACAACAACAAAAACAACAT----------
droSec2	scaffold_33:478046-478220 -		AA-CCACAACTACAAC-AACCACAA---------------CCACTA---CAACAACTTG----TACCC---CAACG------------ACTACGA-CAACCACAA------------CGACTA-------CAACCACTAC--AACGAC-----------------------------------------------TACAACTTGTACCAC---AACAACCACG------------------A-------------------------------------------------------------------------------------------------------CTACCA------CAACTACAACTACAACAACCA----CTACC------ACTACA--------------------------------ACAACTT---G---TACC--CCAACAACTACG------------------------------------------------------------------------------------------------------------------------------------
dm3	chrX:5259431-5259671 +		GA-CAGATGAAACGAAGAACAATAACTACAGCAACGGCCATAACAA---CAAAGGCATG----AACAG---CAGCA------------ACAATAA-TTTTAATAA------------CGATAA-------TAGCCACAAT--AGCAAC-----------------------------------------------TACAACAATTACGGT---TACAACAGCA------------------G-------------------------------------------------------------------------------------------------------CAGCTA------TCGTTACAGTTACC----------------------------------------------------------------------T---TACA--ATTACAATTACGTTCA--------------CGAGTCCCGTT-----TTTTTTCCAG-TGCGTG------CG--TGTATGTGAAA-------------------TTGTTAATATTAACAACAACAAAAACAACAT----------
droEre2	scaffold_4690:2617008-2617272 +		GA-CAGATGAAACGAAGAACAA-GACAACAGCAACGGCCACAACAA---CAAAGGCATG----AACAG---CAGCA------------ACAATAA-TTTTAATAA------------CGATAA-------TAGCCACAAT--AGCAAC-----------------------------------------------AGCAACAATTACAGT---TACAGCAACA------------------G-------------------------------------------------------------------------------------------------------CAGCTA------TCGTTACAGTTACAGTTACAG----TTACC------GTTACC--------------------------------GTTGCCG---T---TACA--CTTACAATTACGTTCA--------------CGAGTCCCGTT-----TTTTTTCCAG-TGCGTG------CG--TGTATGTGAAA-------------------TTGTTATTATTAACAACAACAAAACCTACAT----------
droYak3	X:3206860-3207134 -		GA-CAAATGAAACGAAGAACAAAAACTACAGCAACGGCCACAACAA---CAAAGGCATG----AACAG---CAGCA------------ACAATAA-TTTTAATAA------------CGATAA-------TAGCCACAAT--AGCAAC-----------------------------------------------AACAACAATTACAGTTACA--GTAAATTACAGTTACAGTTA----------------------------------------------------------------------------------------------C---AGCAAC---AGCAGCTA------TCGTTACAGTTACC----------------------GTTACT--------------------------------GTTGCCG---T---TACA--CTTGCAATTACGTTTA--------------CGAGTCCCGTT-----TT-TTTTCAG-TGCGTG------CG--TGTATGTGAAA-------------------TTGTTATTATTAACAACAAAAAAAACAACAT----------
droEug1	scf7180000409182:185904-186176 +		AA--AGCAAGAG-------C---AACAACGGCAACAGAAACAGCAA---CAAAGGCATG----AACAG---CAGTA------------ACAATAA-TTTTAATAA------------CGATAATAGCCAT-----ATAAT--AGCAAC---AAGAACAACAACAACAACAACAGCAACGGCAAAAACAACAA-T-TA---CAATT------------------------ACGATTA----------------------------------------------------------------------------------------------C---GATTGCAACGACGGTTA------TCGTTACAGTTACC------------------------------------------------------------------G---T---TACACTCTTACAATTACGTTGA--------------CGAGTCCCGTTATATTTTTTTTCCAG-TGCGTG------CG--TGTATGTGAAA-------------------TTGTTATTATTAATAACAAC---------AA----------
droBia1	scf7180000301345:234620-234836 -		AA-CAGATGAAACGCAAAGCAA--A------CAACGG---CAACAA---CAAAGGCATG----AACAG---GAGCA------------ACAATAA-TTTTAATAA------------CGTTAA-------TAGCCGCAAT--TA--------------------------------------------------------CAATTACAGT---TACAAT---------------AACCAAC------------------------------------------------------------------------------------------------------AACAGTTA------TCGTTAGAGTTACC------------------------------------------------------------------G---T---TACA--CTTACCATTACGATTA--------------CGAGTCCCGTT-----TTTTTTCCAG-TGCGTG------CG--TGTATGTGCAA-------------------TTGTTATTATTAACAACAAC---------AA----------
droTak1	scf7180000415281:386829-387062 +		AA-CAGATGAAACGAAAAACGACAA------C---AACAACAACAA---TAGAGGCATG----AACAG---CAGCA------------ACAATAA-TATTAATAA------------CGATAA-------TAGCCACAAT--TACAAT-----------------------------------------------TACAGTTACAATT---------------------ACAATTACCAAC------------------------------------------------------------------------------------------------------AACAGTTA------TCGTTGAAGTTACCG---------------------------------------------------------------CTG---T---TACA--CTTACAATTACGTTCA--------------CGAGTCCCGTT-----TTTTTTCCAG-TGCGTG------CG--TGTATGTGAAA-------------------TTGTTATTATTAACAACGACAA---CAACAA----------
droEle1	scf7180000491272:166809-167016 -		A--CAGATGAAACGAAAAACAACAA---------------TAACAA---CAAAGGCATGAATAAACAGCGTCAGCA------------ACAGTAATTTTTAATAT-----------CCGATAA-------TAGCCACA-----GCA--------------------------------------------------ACAACAATTACA---------AC----------------------------------------------------------------------------------------------------------------------------AAC------------------AGTTACC------------------------------------------------------------------G---T---TAAA--CTTACAATTACGTTTA--------------CGAGTCCCGTT----TTTTTTTCCAG-TGCGTG------CG--TGTATGTGAAT-------------------TTGTTATTATTACCAATAACAGAAGCAA-AA----------
droRho1	scf7180000779588:305491-305698 +		AA-CAGATGAAACGAAAAACTACAA------CAA------CAACAA---AAAAGGCATGCATGAACAGCGTCAGAA------------ACAGTAT-TTTTAATAT-----------CCGATAA-------TAGCCACA-----GCA--------------------------------------------------ACAACAATTACAAT-------------------------------------------------------------------------------------------------------------------------------------AACAGTTA------TC------------------------------------------------------------------------------G---T---TACA--CTTACAATTACGTTTA--------------CGAGTCCCGTT-----T-TTTTCCAG-TGCGTG------CG--TGTATGTGAAA-------------------CTGTTATTATTAACAATAACAACAACAAC------------
droFic1	scf7180000454045:376810-377027 +		AA-CAGATGAAACGAAAAACAGCAA---------------CAACAA---CAAAAGCATG----AACAG---CTGCA------------AGCA-------CATTAACAAATAAAAAAAACATAA-------TAGCCACAGG--A-----------------------------------------------------ACAACAATTACAA-------------------------------C------------------------------------------------------------------------------------------------------AACTGTTA------TCGTTACAGTTACC------------------------------------------------------------------G---T---TACA--CTTACAATTACGTTTA--------------CGAGTCCCGTT-----TTTTTTACAG-TGCGTG------AG--TGTATGTGAAA-------------------TTGTTATTATTAACAACAACAACGGCAACAA----------
droKik1	scf7180000302544:951017-951315 +		GG-CATGAACAGCAGC-AGCAAAAATTATAACAACGGCAGCAACAA---CAGCGA----------------CAGCA------------ACTATAG-TTACAATAA------------CAATAA-------GAAATACGAT--AACAATTACAACAATAACACCTGCGGTCACCGCTATATTCACAGTTACAGTCC-ACG-------TT---------------------ACAGTTCCCTAT------------------------------------------------------------------------------------------------------A-TCGTTATAATTCGCGT----------------------------------TACC--------------------------------GTTACCG---T---TACA--CGTACAATTACGTTTACCGCAATCGAAAAGCGAGCTTCAAT-----TTTTTTTCAG-TGCGTG------CG--TGTCTGTGTGCTCCGCCCCAGTCGGTGAAATATCTATT-----------TAGAAATCCTTT----------
droAna3	scaffold_13047:1362607-1362858 +		A--CAAACACAACAAC-AACAACAACAACAACAGCAGCAGCAGCAA---CAGAAACAAG----GACAA---CAACA------------ACAACAA-CTGCAACAA------------CAAGAA-------TGGCAACAACATAACAAA---ACAAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAACGACAAACGCAACAAAACGCAAATT--AACA--------------AC---A---TACA--CTCACAGTT----TTT--------------CAGATTCAGAT-----ATTTGGAGACGGGCCCAAAGGAGTCCACAGAGAT---G-------------------TTGGTACTACAAACAACAACAACAACAACGAGGACAGCGAT
droBip1	scf7180000396434:619920-620125 -		AA-CAACAAAAACGA----CAAAAATTACAACAACAACAAACACAA---AAATTACAAA----AACAA---CAACA------------AAAACAA-CAACGACAA------------CAAAAA-------CAACAACAAA--AACAAC-----------------------------------------------AACAACAATAAAAAT---TACAACAACA------------------A----------------------------------------------------------------------------CAACAAAAATTAC---AACAAC---AACA------------------------ACA----AAAATTACAACAACAACAAAC--------------------------------ACAAAAA---T---TA------------------------------------------------------------------------------------------------------------------CAAAAACAACAACAAGAACAACAA----------
dp5	XR_group8:5517063-5517299 -		GCACACACGGAAGGCGAGACGACGA------C---AA---ACACACAAACACACTCGTA----CAATC---GAGCG------------ACAGAGA-GACATACAC------------CGACAC-------A----------------------------------------------------CACCGACAGGCG-ACG-------AC---------------------GTGGCCCC-CGT------------------------------------------------------------------------------------------------------T-TCCCGAGAGATCGTGT------GAGC----------------------GTCGCT-------------GTCGACGTCGACG----------TAC---A---TACG--GTTACCGTTTCGTTCC--------------CG-TTCCGATC-----GATCGTTCAA-AAA---------AT--CGTATATT-AT-------------------TTATTATTCTTAACAACAAAAATAATAACA-----------
droPer2	scaffold_10:3253848-3254071 -		CAACA-------------------GCAACAGCAGCAGCTACAACTA---CAGCTACAGC----TACAG---CAGCT------------ACAAGAA-CAACAAGAA------------CAACAA-------CAACAACAGC--TACAGC-----------------------------------------------TACAGCAA-TACAAT---AACAATTTCT------------------A-------------------------------------------------------------------------------------------------------CAGCCA------AAACTATAAGTAAG--TTTT-AGA------------GT-------------CACTGGCT--GTCCACGGTCTCTCTCTCTC---T---CTCT--CTCTCTCTCTCTCCCA--------------CTCGTTCTGT---------TTCTCTG-TGTCTG------TG--TCTGTGTCTA--------------------------------------------------T----------
droWil2	scf2_1100000004921:1791829-1792067 -		AA-CAACTACAACAAC-AACAACAACAACAACAACAATTACAACAA---CAACAACAAA----AAT------TACA------AAAACAACAACAA-TTACAACAA------------CAACAA-------CAACCACAAC--AACAAC-----------------------------------------------AACAATAACAACAAC---AACAACAATA------------------A---------------------------------------------------------------------CAACAA-CAACAACAATTAC---AACAAC---AACAACAA------CA------------ACA----ACAATTACA------ACAACA--------------------------------ACAACAACAACAATTA--------------T------------------------------------------------------------------TACAACA-------------------ACAACAATTACAACAACAACAAAAACAGCAA----------
droVir3	scaffold_12726:1985648-1985891 +		AC--AAGAACAATAAC-AACAGAAACAACAACAGCAACAACAGCAA---CAACAA----------------CAACA------------ACAACAA-CAGCAGCAA------------C------------------------ATCAGC-----------------------------------------------TGCAAAAGTAAAG-C---TAAG---------------CTTT--CG-GACTCTGTCGCTGGCTGGCTGCTGTTGCTCTCGGCATTGCCAGCAGCGTTTATAGCTAACCGGGCATTGC-------CAGACGCAAATGC---C------------------------------------------------------------------------------------------------------G---C---TACA------------------------------------------------------GCAG-CGAACG------CG--TCAATAAC-AA-------------------CTGCCACTAGTACAAATAAGAAGAAGAACAA----------
droMoj3	scaffold_6291:1327-1575 -		AA-CAACAACAACAGC-AGCAGCAG------------CAACAACAA---CTACAGCAGC----AGCAG---CAGCAACAACTACAGCAGCAACTG-CTAAAGCAA------------CAACAGAAACTGA-----ATAAC--AATAAC---AACAACAACAGCAGCAGCAGC-----------------------AGCAACAACTACAGC---AGCAGCAGCA---GCAACAACTA----------------------------------------------------------------------------------------------C---A---------------------------GCAGCAGCAGCAGCAG----CAACA------ACAACA--------------------------------GCAGAAA---CTGCTA-----AAGCAACAACA--------------------G-----------------------------------------------AAAC-------------------TGAATAACAACAACAACAACAAAAACAACAA----------
droGri2	scaffold_15203:6433933-6434218 -		AA----ATAATGCGAACAACAACAACAACAGCAACGGCAACAACAA---TAACAACAAT----AACAA---CAGCA------------ACAACAA-CAACAACAA------------CAATAA-------CAGCAGCAGT--AGCAGC-----------------------------------------------AGCAGCAACAACAAT---AATAACAATAGCAGTAACAATAT---------------------------------------------------------------------------CAGCTATAAGCAA-CAAAAGAGCATCAGC---AGCA------------------------ACA----TAAGCAACAG----------C--------------------------------AATGCCA---A--TCAGA--ATGGCGATCATGACTA--------------CGAG----GAT-----ATTTATTTGG-TGCGCGAAGAGTCC--CGCAAGCAAAA-------------------TCAGCAACATCATCAACAGCAGCAGCATCAT----------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GA-CAGATGAAACGAAGAACAATAACTACAGCAACGGCCACAACAA---CAAAGGCATG----AACAG---CAGCA------------ACAATAA-TTTTAATAA------------CGATAA-------TAGCCACAAT--AGCAAC-----------------------------------------------TACAACAATTACGGT---TACAACAGCA------------------G-------------------------------------------------------------------------------------------------------CAGCTA------TCGTTACAGTTACCGTTACCG----TTACC------GTTGCC--------------------------------CTTACAC---T---TACA--CTTACAATTACGTTCA--------------CGAGTCCCGTT-----TTTTTTTCAG-TGCGTG------CG--TGTATGTGAAA-------------------TTGTTATTATTAACAACAACAAAAACAACAT----------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CG--TGTATGTGAAA-------------------TTGTTATTATT..............................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

AA-CCACAACTACAAC-AACCACAA---------------CCACTA---CAACAACTTG----TACCC---CAACG------------ACTACGA-CAACCACAA------------CGACTA-------CAACCACTAC--AACGAC-----------------------------------------------TACAACTTGTACCAC---AACAACCACG------------------A-------------------------------------------------------------------------------------------------------CTACCA------CAACTACAACTACAACAACCA----CTACC------ACTACA--------------------------------ACAACTT---G---TACC--CCAACAACTACG------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

GA-CAGATGAAACGAAGAACAATAACTACAGCAACGGCCATAACAA---CAAAGGCATG----AACAG---CAGCA------------ACAATAA-TTTTAATAA------------CGATAA-------TAGCCACAAT--AGCAAC-----------------------------------------------TACAACAATTACGGT---TACAACAGCA------------------G-------------------------------------------------------------------------------------------------------CAGCTA------TCGTTACAGTTACC----------------------------------------------------------------------T---TACA--ATTACAATTACGTTCA--------------CGAGTCCCGTT-----TTTTTTCCAG-TGCGTG------CG--TGTATGTGAAA-------------------TTGTTAATATTAACAACAACAAAAACAACAT----------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCA--------------CGAGTCCCGTT-----TTTTTTCCAG-T......................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.A-CAGATGAAACGAAGAACAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TGCGTG------CG--TGTATGTGAAA-------------------TTGT.....................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................AATAA-TTTTAATAA------------CGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAAAAACAACA...........	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GA-CAGATGAAACGAAGAACAA-GACAACAGCAACGGCCACAACAA---CAAAGGCATG----AACAG---CAGCA------------ACAATAA-TTTTAATAA------------CGATAA-------TAGCCACAAT--AGCAAC-----------------------------------------------AGCAACAATTACAGT---TACAGCAACA------------------G-------------------------------------------------------------------------------------------------------CAGCTA------TCGTTACAGTTACAGTTACAG----TTACC------GTTACC--------------------------------GTTGCCG---T---TACA--CTTACAATTACGTTCA--------------CGAGTCCCGTT-----TTTTTTCCAG-TGCGTG------CG--TGTATGTGAAA-------------------TTGTTATTATTAACAACAACAAAACCTACAT----------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

GA-CAAATGAAACGAAGAACAAAAACTACAGCAACGGCCACAACAA---CAAAGGCATG----AACAG---CAGCA------------ACAATAA-TTTTAATAA------------CGATAA-------TAGCCACAAT--AGCAAC-----------------------------------------------AACAACAATTACAGTTACA--GTAAATTACAGTTACAGTTA----------------------------------------------------------------------------------------------C---AGCAAC---AGCAGCTA------TCGTTACAGTTACC----------------------GTTACT--------------------------------GTTGCCG---T---TACA--CTTGCAATTACGTTTA--------------CGAGTCCCGTT-----TT-TTTTCAG-TGCGTG------CG--TGTATGTGAAA-------------------TTGTTATTATTAACAACAAAAAAAACAACAT----------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

AA--AGCAAGAG-------C---AACAACGGCAACAGAAACAGCAA---CAAAGGCATG----AACAG---CAGTA------------ACAATAA-TTTTAATAA------------CGATAATAGCCAT-----ATAAT--AGCAAC---AAGAACAACAACAACAACAACAGCAACGGCAAAAACAACAA-T-TA---CAATT------------------------ACGATTA----------------------------------------------------------------------------------------------C---GATTGCAACGACGGTTA------TCGTTACAGTTACC------------------------------------------------------------------G---T---TACACTCTTACAATTACGTTGA--------------CGAGTCCCGTTATATTTTTTTTCCAG-TGCGTG------CG--TGTATGTGAAA-------------------TTGTTATTATTAATAACAAC---------AA----------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AA-CAGATGAAACGCAAAGCAA--A------CAACGG---CAACAA---CAAAGGCATG----AACAG---GAGCA------------ACAATAA-TTTTAATAA------------CGTTAA-------TAGCCGCAAT--TA--------------------------------------------------------CAATTACAGT---TACAAT---------------AACCAAC------------------------------------------------------------------------------------------------------AACAGTTA------TCGTTAGAGTTACC------------------------------------------------------------------G---T---TACA--CTTACCATTACGATTA--------------CGAGTCCCGTT-----TTTTTTCCAG-TGCGTG------CG--TGTATGTGCAA-------------------TTGTTATTATTAACAACAAC---------AA----------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AA-CAGATGAAACGAAAAACGACAA------C---AACAACAACAA---TAGAGGCATG----AACAG---CAGCA------------ACAATAA-TATTAATAA------------CGATAA-------TAGCCACAAT--TACAAT-----------------------------------------------TACAGTTACAATT---------------------ACAATTACCAAC------------------------------------------------------------------------------------------------------AACAGTTA------TCGTTGAAGTTACCG---------------------------------------------------------------CTG---T---TACA--CTTACAATTACGTTCA--------------CGAGTCCCGTT-----TTTTTTCCAG-TGCGTG------CG--TGTATGTGAAA-------------------TTGTTATTATTAACAACGACAA---CAACAA----------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A--CAGATGAAACGAAAAACAACAA---------------TAACAA---CAAAGGCATGAATAAACAGCGTCAGCA------------ACAGTAATTTTTAATAT-----------CCGATAA-------TAGCCACA-----GCA--------------------------------------------------ACAACAATTACA---------AC----------------------------------------------------------------------------------------------------------------------------AAC------------------AGTTACC------------------------------------------------------------------G---T---TAAA--CTTACAATTACGTTTA--------------CGAGTCCCGTT----TTTTTTTCCAG-TGCGTG------CG--TGTATGTGAAT-------------------TTGTTATTATTACCAATAACAGAAGCAA-AA----------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AA-CAGATGAAACGAAAAACTACAA------CAA------CAACAA---AAAAGGCATGCATGAACAGCGTCAGAA------------ACAGTAT-TTTTAATAT-----------CCGATAA-------TAGCCACA-----GCA--------------------------------------------------ACAACAATTACAAT-------------------------------------------------------------------------------------------------------------------------------------AACAGTTA------TC------------------------------------------------------------------------------G---T---TACA--CTTACAATTACGTTTA--------------CGAGTCCCGTT-----T-TTTTCCAG-TGCGTG------CG--TGTATGTGAAA-------------------CTGTTATTATTAACAATAACAACAACAAC------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AA-CAGATGAAACGAAAAACAGCAA---------------CAACAA---CAAAAGCATG----AACAG---CTGCA------------AGCA-------CATTAACAAATAAAAAAAACATAA-------TAGCCACAGG--A-----------------------------------------------------ACAACAATTACAA-------------------------------C------------------------------------------------------------------------------------------------------AACTGTTA------TCGTTACAGTTACC------------------------------------------------------------------G---T---TACA--CTTACAATTACGTTTA--------------CGAGTCCCGTT-----TTTTTTACAG-TGCGTG------AG--TGTATGTGAAA-------------------TTGTTATTATTAACAACAACAACGGCAACAA----------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GG-CATGAACAGCAGC-AGCAAAAATTATAACAACGGCAGCAACAA---CAGCGA----------------CAGCA------------ACTATAG-TTACAATAA------------CAATAA-------GAAATACGAT--AACAATTACAACAATAACACCTGCGGTCACCGCTATATTCACAGTTACAGTCC-ACG-------TT---------------------ACAGTTCCCTAT------------------------------------------------------------------------------------------------------A-TCGTTATAATTCGCGT----------------------------------TACC--------------------------------GTTACCG---T---TACA--CGTACAATTACGTTTACCGCAATCGAAAAGCGAGCTTCAAT-----TTTTTTTCAG-TGCGTG------CG--TGTCTGTGTGCTCCGCCCCAGTCGGTGAAATATCTATT-----------TAGAAATCCTTT----------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

A--CAAACACAACAAC-AACAACAACAACAACAGCAGCAGCAGCAA---CAGAAACAAG----GACAA---CAACA------------ACAACAA-CTGCAACAA------------CAAGAA-------TGGCAACAACATAACAAA---ACAAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAACGACAAACGCAACAAAACGCAAATT--AACA--------------AC---A---TACA--CTCACAGTT----TTT--------------CAGATTCAGAT-----ATTTGGAGACGGGCCCAAAGGAGTCCACAGAGAT---G-------------------TTGGTACTACAAACAACAACAACAACAACGAGGACAGCGAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................AACAACAACAACAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACAACAACAACAACG...........	20	9	0.11	1	0	1	0	0	0	0
..........................AACAACAGCAGCAGCAGCAA---C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	1	0	0	0	1
...................CAACAACAACAACAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0
......................CAACAACAACAGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	1	0	0	0	1
.................AACAACAACAACAACAGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	19	0.05	1	1	0	0	0	0	0
.............AAC-AACAACAACAACAACAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	19	0.05	1	0	1	0	0	0	0
.....................ACAACAACAACAGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
..................ACAACAACAACAACAGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.....................ACAACAACAACAGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
................................AGCAGCAGCAGCAA---CAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
..........................AACAACAGCAGCAGCAGCAA---CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
..................ACAACAACAACAACAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
........ACAACAAC-AACAACAACAACAACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
........................ACAACAACAGCAGCAGCAGCAA---CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
.......................AACAACAACAGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
.................AACAACAACAACAACAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
........................ACAACAACAGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
........ACAACAAC-AACAACAACAACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
......................CAACAACAACAGCAGCAGCAGCAA---C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.......................AACAACAACAGCAGCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1

droBip1

AA-CAACAAAAACGA----CAAAAATTACAACAACAACAAACACAA---AAATTACAAA----AACAA---CAACA------------AAAACAA-CAACGACAA------------CAAAAA-------CAACAACAAA--AACAAC-----------------------------------------------AACAACAATAAAAAT---TACAACAACA------------------A----------------------------------------------------------------------------CAACAAAAATTAC---AACAAC---AACA------------------------ACA----AAAATTACAACAACAACAAAC--------------------------------ACAAAAA---T---TA------------------------------------------------------------------------------------------------------------------CAAAAACAACAACAAGAACAACAA----------	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCACACACGGAAGGCGAGACGACGA------C---AA---ACACACAAACACACTCGTA----CAATC---GAGCG------------ACAGAGA-GACATACAC------------CGACAC-------A----------------------------------------------------CACCGACAGGCG-ACG-------AC---------------------GTGGCCCC-CGT------------------------------------------------------------------------------------------------------T-TCCCGAGAGATCGTGT------GAGC----------------------GTCGCT-------------GTCGACGTCGACG----------TAC---A---TACG--GTTACCGTTTCGTTCC--------------CG-TTCCGATC-----GATCGTTCAA-AAA---------AT--CGTATATT-AT-------------------TTATTATTCTTAACAACAAAAATAATAACA-----------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................CAC-------A----------------------------------------------------CACCGACAGGCG-ACG-------AC---------------------G.............................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	3	0	0
................................................ACACACTCGTA----CAATC---GAGCG------------ACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................ACAAACACACTCGTA----CAATC---GA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GT------------------------------------------------------------------------------------------------------T-TCCCGAGAGATCGTGT------GAGC----------------------GT........................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................CGTA----CAATC---GAGCG------------ACAGAGA-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GT------------------------------------------------------------------------------------------------------T-TCCCGAGAGATCGTGT------....................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AGATCGTGT------GAGC----------------------GTCGCT-------------.......................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTCC--------------CG-TTCCGATC-----..................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC--------------CG-TTCCGATC-----GATCGTTC..........................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTTCGTTCC--------------CG-TTCCGATC-----GATC..............................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................C---A---TACG--GTTACCGTTTCGTTCC--------------C.................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................CG------------ACAGAGA-GACATACAC------------CGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CAACA-------------------GCAACAGCAGCAGCTACAACTA---CAGCTACAGC----TACAG---CAGCT------------ACAAGAA-CAACAAGAA------------CAACAA-------CAACAACAGC--TACAGC-----------------------------------------------TACAGCAA-TACAAT---AACAATTTCT------------------A-------------------------------------------------------------------------------------------------------CAGCCA------AAACTATAAGTAAG--TTTT-AGA------------GT-------------CACTGGCT--GTCCACGGTCTCTCTCTCTC---T---CTCT--CTCTCTCTCTCTCCCA--------------CTCGTTCTGT---------TTCTCTG-TGTCTG------TG--TCTGTGTCTA--------------------------------------------------T----------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................AAGAA-CAACAAGAA------------CAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	1	0	0	0	0

droWil2

AA-CAACTACAACAAC-AACAACAACAACAACAACAATTACAACAA---CAACAACAAA----AAT------TACA------AAAACAACAACAA-TTACAACAA------------CAACAA-------CAACCACAAC--AACAAC-----------------------------------------------AACAATAACAACAAC---AACAACAATA------------------A---------------------------------------------------------------------CAACAA-CAACAACAATTAC---AACAAC---AACAACAA------CA------------ACA----ACAATTACA------ACAACA--------------------------------ACAACAACAACAATTA--------------T------------------------------------------------------------------TACAACA-------------------ACAACAATTACAACAACAACAAAAACAGCAA----------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------TACAACA-------------------ACAACAATTACA.............................	20	16	0.06	1	0	1	0	0	0
.....................................................................................................................................CCACAAC--AACAAC-----------------------------------------------AACAAT..........................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0

droVir3

AC--AAGAACAATAAC-AACAGAAACAACAACAGCAACAACAGCAA---CAACAA----------------CAACA------------ACAACAA-CAGCAGCAA------------C------------------------ATCAGC-----------------------------------------------TGCAAAAGTAAAG-C---TAAG---------------CTTT--CG-GACTCTGTCGCTGGCTGGCTGCTGTTGCTCTCGGCATTGCCAGCAGCGTTTATAGCTAACCGGGCATTGC-------CAGACGCAAATGC---C------------------------------------------------------------------------------------------------------G---C---TACA------------------------------------------------------GCAG-CGAACG------CG--TCAATAAC-AA-------------------CTGCCACTAGTACAAATAAGAAGAAGAACAA----------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................................................................................................................TGTTGCTCTCGGCATTGCCAGCA.....................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................AACAACAACAGCAACAACAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................A------------ACAACAA-CAGCAGCAA------------C------------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................AACAGCAA---CAACAA----------------CAACA------------AC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................AGAAACAACAACAGCAACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CAACAACAGCAA---CAACAA----------------CAACA------------AC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................CAACAGCAA---CAACAA----------------CAACA------------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................CAACAA----------------CAACA------------ACAACAA-CAGCAGCAA------------C------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AACAA----------------CAACA------------ACAACAA-CAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................CAGCAACAACAGCAA---CAACAA----------------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................CAA----------------CAACA------------ACAACAA-CAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AACAA----------------CAACA------------ACAACAA-CAGCAGCAA------------C------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AACAACAGCAACAACAGCAA---CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................A----------------CAACA------------ACAACAA-CAGCAGCAA------------C------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................A------------ACAACAA-CAGCAGCAA------------C------------------------AT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CAACAGCAACAACAGCAA---CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AGCAACAACAGCAA---CAACAA----------------CAACA------------AC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AACAA----------------CAACA------------ACAACAA-CAGCAGCAA------------C------------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AACAGCAACAACAGCAA---CAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................ACAA----------------CAACA------------ACAACAA-CAGCAGCAA------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AA-CAACAACAACAGC-AGCAGCAG------------CAACAACAA---CTACAGCAGC----AGCAG---CAGCAACAACTACAGCAGCAACTG-CTAAAGCAA------------CAACAGAAACTGA-----ATAAC--AATAAC---AACAACAACAGCAGCAGCAGC-----------------------AGCAACAACTACAGC---AGCAGCAGCA---GCAACAACTA----------------------------------------------------------------------------------------------C---A---------------------------GCAGCAGCAGCAGCAG----CAACA------ACAACA--------------------------------GCAGAAA---CTGCTA-----AAGCAACAACA--------------------G-----------------------------------------------AAAC-------------------TGAATAACAACAACAACAACAAAAACAACAA----------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA--------------------G-----------------------------------------------AAAC-------------------TGAATAACAACAACAAC........................	28	11	0.18	2	2	0	0	0	0	0
.........................................................................................................................AGAAACTGA-----ATAAC--AATAAC---AACAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	8	0.13	1	1	0	0	0	0	0
...........................................................................................................................AAACTGA-----ATAAC--AATAAC---AACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	8	0.13	1	1	0	0	0	0	0
........................................................................................................A------------CAACAGAAACTGA-----ATAAC--AATAAC---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	8	0.13	1	0	0	0	0	1	0
........................................................................................................A------------CAACAGAAACTGA-----ATAAC--AATAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	1	0	0	0	0	0
..................................................................................................................................................AC---AACAACAACAGCAGCAGCAGC-----------------------AGCA............................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA--------------------G-----------------------------------------------AAAC-------------------TGAATAACAACAACAA.........................	27	11	0.09	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC-------------------TGAATAACAACAACAACAAC.....................	24	11	0.09	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC-------------------TGAATAACAACAACAACAACA....................	25	11	0.09	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA--------------------G-----------------------------------------------AAAC-------------------TGAATAACAACAACA..........................	26	11	0.09	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-------------------TGAATAACAACAACAACAAC.....................	23	11	0.09	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA--------------------G-----------------------------------------------AAAC-------------------TGAATAACAACA.............................	22	12	0.08	1	1	0	0	0	0	0
....................AGCAG------------CAACAACAA---CTACAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.08	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC-------------------TGAATAACAACAACAAC........................	21	13	0.08	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA--------------------G-----------------------------------------------AAAC-------------------TGAATAACAACAACAACA.......................	26	13	0.08	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA--------------------G-----------------------------------------------AAAC-------------------TGAATAACAACAAC...........................	22	13	0.08	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................GCAACAACTA----------------------------------------------------------------------------------------------C---A---------------------------GCAGCAGCAGC..............................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................ACAACTA----------------------------------------------------------------------------------------------C---A---------------------------GCAGCAGCAGCA.............................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..........................................ACAA---CTACAGCAGC----AGCAG---CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................AGCAGCAGCAGC-----------------------AGCAACAAC.......................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAG----CAACA------ACAACA--------------------------------GC..................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................GCAACAACTACAGC---AGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................ACAACTACAGC---AGCAGCAGCA---.................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..........AACAGC-AGCAGCAG------------CAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0

droGri2

AA----ATAATGCGAACAACAACAACAACAGCAACGGCAACAACAA---TAACAACAAT----AACAA---CAGCA------------ACAACAA-CAACAACAA------------CAATAA-------CAGCAGCAGT--AGCAGC-----------------------------------------------AGCAGCAACAACAAT---AATAACAATAGCAGTAACAATAT---------------------------------------------------------------------------CAGCTATAAGCAA-CAAAAGAGCATCAGC---AGCA------------------------ACA----TAAGCAACAG----------C--------------------------------AATGCCA---A--TCAGA--ATGGCGATCATGACTA--------------CGAG----GAT-----ATTTATTTGG-TGCGCGAAGAGTCC--CGCAAGCAAAA-------------------TCAGCAACATCATCAACAGCAGCAGCATCAT----------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATCATGACTA--------------CGAG----GAT-----ATT...............................................................................................	23	1	1.00	1	1	0
........................................................................................................A------------CAATAA-------CAGCAGCAGT--A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	6	0.17	1	1	0
.............................................................................................AA-CAACAACAA------------CAATAA-------CAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0

dsi_18292

x:4908988-4909153 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads