ID:

dsi_18284

 Coordinate:

3r:20380842-20381075 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-44.9 -44.9 -44.9

Flybase annnotation

exon [3r_20381076_20381306_-]; CDS [3r_20381076_20381306_-]; exon [3r_20380662_20380841_-]; CDS [3r_20380662_20380841_-]; intron [3r_20380842_20381075_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCGTACACATCTTCATGGACGAGGACTTCAAATCGGCCGAGCACTTTACGGTGGGTGGGTGAATCGTATTTCTAGGTCAATCGGCACATCAAAACCCAATTCGGATGAACTAAGGCGTTGCGCACATATTGTTCAATTAAAATTGCGCCGAAAGCCTTTTAAAAAATATGAATTAAGTCACTGGGCTTAGTCATGATAAATGAGTCTTGAATTGACGTATCAACATACAAAAAAGTTATATCGGGTTAAACCCAATAACCACATTATTGTATTATTATTTTTAGGCCCTTGGAAGTTTGTACTTTGTGCATAAGAATGTTGCTTCTCTGAAGAT
**************************************************((((((.(((..(((.........)))..))).)).((((..((.....))..))))....(((((...(((((.((.(((......))).))))))).....)))))........(((((.(((((((....))))))))))))....(((.(((.......))).)))..................(((.((((...)))).))).))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
..............................AATCGGTCGAGCACTTAACC............................................................................................................................................................................................................................................................................................ 20 3 2 12.50 25 21 4 0 0 0 0 0 0 0 0 0
..............................AATCGGTCGAGGACTTAAC............................................................................................................................................................................................................................................................................................. 19 3 11 12.00 132 110 18 3 0 0 0 0 1 0 0 0
..............................AATCGGCCGAGGACTTAACC............................................................................................................................................................................................................................................................................................ 20 3 4 8.25 33 31 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................CCTTGGAAGTTTGTA................................. 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TATGACACTGGGCTTAGTCAAGAT......................................................................................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................ACGGCCCTTGGAAGTTTGTACTTTGTGC......................... 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................GTTTGTACTTTGTGCATAAGAAT................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................ATATGAATTAAGTCACTGGGCT................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................AATTCGGATGAACTGAGGCGT........................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................GCATCTCTAGCTCAATCGGCA........................................................................................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................GTACCTCTAGCTCAATCGGC......................................................................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................TCACTGGGCTTTGTCA............................................................................................................................................. 16 1 4 0.50 2 0 0 0 0 2 0 0 0 0 0 0
...............................ATCGGTCGAGCACTTAACC............................................................................................................................................................................................................................................................................................ 19 3 13 0.38 5 4 1 0 0 0 0 0 0 0 0 0
...............................ATCGGCCGAGGACTTAACC............................................................................................................................................................................................................................................................................................ 19 3 14 0.36 5 5 0 0 0 0 0 0 0 0 0 0
..............................AATCGGTCGAGGACTTTACC............................................................................................................................................................................................................................................................................................ 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................CATAGGAATGTAGCTTGTCT...... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TCACTGGGCTTTGTCATT........................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................ACTTTGAGCATTTGAATGTTGC............ 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
..........................................ACTTTACTGTGGAAGGGTGA................................................................................................................................................................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................TGCGCCGGAAGCCTT................................................................................................................................................................................ 15 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................AGATGTGAGTCTTGAATTGA....................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0
..................................................GTGGGTAGGGGAATCGTA.......................................................................................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................GAGTCACTGGGCTTTGT............................................................................................................................................... 17 2 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
......................................................GTGGGTCAATAGTGTTTCTA.................................................................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0
..........................TACTAATCGGTCGAGCACT................................................................................................................................................................................................................................................................................................. 19 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................TTTGTGTATAAAAATGTTGGT........... 21 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1
...................................................................ACCTCTAGCTCAATCGGCA........................................................................................................................................................................................................................................................ 19 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0
...............................ATCGGTCGAGGACTTTACC............................................................................................................................................................................................................................................................................................ 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TCACTGGGCTTTGTC.............................................................................................................................................. 15 1 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................GTCCATAGGAATGTAGCTT.......... 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TCACTGGGCTTTGTCAA............................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..........................TACTAATCGGCCGAGGACT................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................AGTTCTATCGGGTAAAGC................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................CTCTAGCTCAATCGGCAGA...................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................AATTTAGTCACTGGGCAGA................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

CGCATGTGTAGAAGTACCTGCTCCTGAAGTTTAGCCGGCTCGTGAAATGCCACCCACCCACTTAGCATAAAGATCCAGTTAGCCGTGTAGTTTTGGGTTAAGCCTACTTGATTCCGCAACGCGTGTATAACAAGTTAATTTTAACGCGGCTTTCGGAAAATTTTTTATACTTAATTCAGTGACCCGAATCAGTACTATTTACTCAGAACTTAACTGCATAGTTGTATGTTTTTTCAATATAGCCCAATTTGGGTTATTGGTGTAATAACATAATAATAAAAATCCGGGAACCTTCAAACATGAAACACGTATTCTTACAACGAAGAGACTTCTA
**************************************************((((((.(((..(((.........)))..))).)).((((..((.....))..))))....(((((...(((((.((.(((......))).))))))).....)))))........(((((.(((((((....))))))))))))....(((.(((.......))).)))..................(((.((((...)))).))).))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
......................................................................................GTAGTTTTGGGTTATGGCTA.................................................................................................................................................................................................................................... 20 2 1 2.00 2 2 0 0 0
.....................................................................................TGTAGTTTTGGGTTATG........................................................................................................................................................................................................................................ 17 1 3 1.33 4 4 0 0 0
................................................................................AGCCCAGTAGTTTTGGGTTATG........................................................................................................................................................................................................................................ 22 3 1 1.00 1 1 0 0 0
..................................................................................CGGTGTAGTTTTGGGTT........................................................................................................................................................................................................................................... 17 1 2 1.00 2 2 0 0 0
....................................................................................GCGTAGTTTTGGGTTA.......................................................................................................................................................................................................................................... 16 1 5 0.60 3 3 0 0 0
...................................................................................CATGTAGTTTTGGGTTA.......................................................................................................................................................................................................................................... 17 1 2 0.50 1 1 0 0 0
.................................................................................ACCGTGTAGTTTTGGGTT........................................................................................................................................................................................................................................... 18 1 2 0.50 1 1 0 0 0
.................................................................................ACCGCGTAGTTTTGGGTTATG........................................................................................................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0
.....................................................................................AGTAGTTTTGGGTTA.......................................................................................................................................................................................................................................... 15 1 20 0.35 7 0 5 0 2
.......................................................................................TAGTTTTGGGTTATACCTA.................................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0
......................................................................................GTAGTTTTGGGTTACG........................................................................................................................................................................................................................................ 16 1 7 0.29 2 2 0 0 0
.....................................................................................CGTAGTTTTGGGTTAA......................................................................................................................................................................................................................................... 16 1 4 0.25 1 1 0 0 0
..................................................................................CCAGGTAGTTTTGGGTTATG........................................................................................................................................................................................................................................ 20 3 4 0.25 1 1 0 0 0
...................................................................................CGGGTAGTTTTGGGTTA.......................................................................................................................................................................................................................................... 17 1 4 0.25 1 1 0 0 0
.......................................................................................TAGTTTTGGGTTATGCCCA.................................................................................................................................................................................................................................... 19 2 4 0.25 1 1 0 0 0
..................................................................................CTGCGTAGTTTTGGGTTA.......................................................................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0
.................................................................................GCCTGGTAGTTTTGGGTT........................................................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0
....................................................................................GGGTAGTTTTGGGTTA.......................................................................................................................................................................................................................................... 16 1 6 0.17 1 1 0 0 0
............................................................................TGTTAGCCGTGCAGTCTTG............................................................................................................................................................................................................................................... 19 3 13 0.15 2 0 0 2 0
...................................................................................CGAGTAGTTTTGGGTT........................................................................................................................................................................................................................................... 16 1 7 0.14 1 1 0 0 0
.................................................................................ACCGCGTAGTTTTGGGTT........................................................................................................................................................................................................................................... 18 2 8 0.13 1 1 0 0 0
..................................................................................TCCTGTAGTTTTGGGTTA.......................................................................................................................................................................................................................................... 18 2 10 0.10 1 1 0 0 0
......................................................................................GTAGTTTTGGGTTATGCCCG.................................................................................................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0
....................................................................................GGGTAGTTTTGGGTTATG........................................................................................................................................................................................................................................ 18 2 12 0.08 1 1 0 0 0
...................................................................................CGGGTAGTTTTGGGTTATGG....................................................................................................................................................................................................................................... 20 3 14 0.07 1 1 0 0 0
....................................................................................GCGTAGTTTTGGGTT........................................................................................................................................................................................................................................... 15 1 18 0.06 1 1 0 0 0
.......................................................................................TAGTTTTGGGTTACG........................................................................................................................................................................................................................................ 15 1 20 0.05 1 1 0 0 0
..........................................................................................................................GAGTATAACAAGTTA..................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:20380792-20381125 - dsi_18284 GCGTACACATCTTCATGGACGAGGACTTCAAATCGGCCGAGCACTTTACGGTGGGTGGG--TGAAT-CGTATTTCTAGGTCAATCGG-CA-CATCAAAAC-C-CAATTCGGATGAACT-----AAGGCGTT--G-----CG-----CACATATTGTTCAATTAAAATTGCGCCGAAAGCC----------TTTT------------------------------------------------------AAAAAAT------------------------------------------------------------------------ATGAATTAAGT-CACTGGGC-----------------TTAGTCAT-----------------------------------------------------------GATA-AATGAGTC--TTG---------------------------------------------------------------------------------------------AATTGACGTATCAACATACAAAAAAGTTATATCGGGTTAAACCCAA-----------------TAACCA-CA--------------------------------------------------TTATTGT-----------------AT-----TA-----TTATTTTTAGGCCCTTGGAAGTTTGTACTTTGTGCATAAGAATGTTGCTTCTCTGAAGAT
droSec2 scaffold_33:131745-132036 - GCGTACACATCTTCATGGACGAGGACTTCAAATCGGCCGAGCACTTTACGGTGGGTGGG--TGAAT-CGTATTTCTAGGTTAATCGG-CA-CATCAAATC-A-TAATCGG-----------------------------------------------------------CGCCGAAAGCC----------TTTT------------------------------------------------------AAAAAAT------------------------------------------------------------------------ATGAATTAAGT-CACTGGGC-----------------TTAGTCAT-----------------------------------------------------------GATA-AATGAGTC--TTG---------------------------------------------------------------------------------------------AATTGACGTATCAACATACAAAAAAGTTATATCGGGTTGAACCCAA-----------------TAACCA-CA--------------------------------------------------TTATTGT-----------------AT-----TA-----TTATTTTTAGGCCCTTGGAAGTTTGTACTTTGTGCATAAGGATGTTGCTTCTCTGAAGAT
dm3 chr3R:20869962-20870297 - GCGTACACATCTTCATGGACGAGGACTTCAAATCGGCCGAGCACTTTACGGTGGGTGGG--TGAAT-CGTGTTTCTAGGTCAATCGG-CA-CATAAAAAC-C-CAATTCGGATGAACT-----GAGGCGTT--A-----CG-----CACTTATTGTTCAATTAAAATTGCGACGAAAGCC----------TTTT------------------------------------------------------AAAAAAT------------------------------------------------------------------------ATGAATTAAGT-CACTGGGC-----------------TTAGTCAT-----------------------------------------------------------GATG-AATGAGTCTCTTG---------------------------------------------------------------------------------------------AATTCACATATCAACATACAAAAATGTTATATCCGGTTAAAACAAA-----------------TACCCA-CA--------------------------------------------------TTATTGT-----------------AT-----TA-----TTATTTTTAGGCCCTTGGAAGTCTTTACTTTGTGCATAAGGATGTTGCTTCTCTGAAGAT
droEre2 scaffold_4820:7182453-7182760 + GCGTACACATCTTCATGGACGAGGATTTCAAATCAGCCGAGCACTTTACGGTGGGTG------AAT-CGTGTTTCTAGGTCAATCGG-CA-CATCAAAAC-C-CAATTCAGATGAACT-----GAGGCGTT-AA-----CG-----CACTTATTGTTCAATTGAAATTGAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAAGT--ACTGGGC-----------------TTAGTCAT-----------------------------------------------------------GATG-AATGAGTC--TTG---------------------------------------------------------------------------------------------AATTCATATATTAACAAAC-----------------------CCAA-----------------AAAACAAGATT----------------C----------------TAT-TT-CATTTC--TAATTGT-----------------TCAAAAAAA--TATGTATCTTTAGGCCCTTGGAAGTCTCTACTTTGTGCATAAGGATGTTGATTCTCTGAAGAT
droYak3 3R:25627422-25627755 + GCGTACACATCTTCATGGACGAGGACTTCAAGTCAGCCGAGCACTTTACGGTGGGTG------AAT-CGTGTTTCTAGGTCAATCGG-CA-CATCAAAAA-C-CAATTCAGATGAACT-----GAGGCGTT-AA-----CG-----CA-----------ATTACAATTTCGCCGAAAGCA----------TCAT------------------------------------------------------G-AAAAT------------------------------------------------------------------------ATGAATTCAAT-CACTGGGC-----------------TTAGTCAT-----------------------------------------------------------GATG-AATGGGTC--TTG---------------------------------------------------------------------------------------------AATTCCTATATCAACAGATACGCGTATTATTTCCGGTCAAGCCCAA-----------------AAACAA-CATT----------------T----------------TATT--TATT-----TTATTGT-----------------AT-----TATAT-TTTATTTTTAGGCCCTTGGAAGTCTCTACTTTGTGCATAAGGATGTTGATTCTCTGAAGAT
droEug1 scf7180000409692:530393-530625 + GCGTACACATCTTCATGGACGAGGACTTCAAGTCGGCCGAGCACTTTACGGTGAGTGAA----TAT-TGTGTTTCTAGGTCTATCGG-CA-TATCAACAACACAAATTCTGATGATTT-----AAGGCATTTAA-----AG-----CACTCATTCTTTAATTAAAAGTATAC-GAAAATA-------------------------------------------------------------------------------------------------------------------------------------ATTGTTCTTTAAATTGTTATTAAGTTCAGTAGTC-----------------TTAGTCAT-----------------------------------------------------------GAGG-GATGAGTT--GAT---------------------------------------------------------------------------------------------ATTTCACTTATCAACAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302136:1665939-1666375 - GCGTACACATCTTCATGGACGAGGACTTCAAGTCAGCCGAGCACTTTACGGTGGGTGAA------TCCGTGTTTCTAGGTCAATCGGGCG-CATCGACAA-A-TGATTCGGATGAGAAGAGATGAGGCGTA--GGGCTACGGGAATCAC---TTGTTCAATTAAAAGTATACCGAAAATG----------TTTC------------------------------------------------------A--GAAC------------------------------------------------------------------------TTCAATTAAGT-CACTGGGC-----------------TTAGTCAC-----------------------------------------------------------GGAG-CATGAGTT----GGTTTCCATTCATCAGAGAACCGCCATTTCCGTGCTTCTTTAAAACTCGTACGCCAAAAAACACACAGCTGTGCTCAAAAATATAGTGTTT----------------------------------------------------------------CGAAA-AA-CAAAGCTTAGTACTGATAACTAAATTAGAACCAACTGTAAT--TTTT-TAAA--AT--TTCTAATGA-----------------TAAC-TTTATTTTTAGGCCCTTGGAAGTCTGTACTTTGTCCATAAGGATGTGGCTTCCTTGAAAAT
droTak1 scf7180000415658:178622-178990 - GCGTACACATCTTCATGGACGAGGACTTCAAGTCAGCCGAGCATTTCACGGTGGGTT------AAT-CGTGTTTCTAGGTCAATCGGGCG-CGTCGAAAA-A-AGATTGGGATGAGCT-----CAGGCATTTAA-----AG-----CGCCCATTGTTCAAT-GAGGGTATACCGAAAATA----------TT-T------------------------------------------------------AAAAAAT------------------------------------------------------------------------TTTAATTAACT-CGCTGGGT-----------------TTAGTCAT-----------------------------------------------------------GATATGGTGACTC--TTT--------------------------------------------------------------------------------------------TATTTCATTCATCAACAAACA----------------TCAAACTAAGTGGGAAAAATATTTTTGAAAAAA-CATT------------TAACT----------------TAT-TT-TGTAAA--TATTTAT-TTAATTATATTTATGTA--------TAT-TCAATTTTTAGGCCCTGGGAAGTCTATATTTTGTCCATAAGGATGTTACTTCCTTGAAAAT
droEle1 scf7180000491212:181721-181828 - GCGTACACATCTTCATGGACGAGGACTTCAAGTCGGCCGAGCACTTTACGGTGAGTTAACGTAGAC-CGTGCTTCCAGCT---------A-CATAAAAAA-C-TATTTTGAATGAGCT-----AAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000778266:13743-14112 + GCGTACACATCTTCATGGACGAAGACTTCAAGTCAGCCGAGCATTTCACGGTGAGTG------AAT-CATGTTTCCAGGTTCATCGG-AG-CATCAAAAA-C--AGCTTGGATAAGCT-----ATGTAGCT-C----TCCG-----TA---------------------TTCCAAAAATATTTAAAAGTATAACACAATATACATACATATCTCTATATTTAATCTTC-------------------------ATA----------------------------------------------------------------------------TAATTT-CAAGAAACCACATTAATAGGAT---------------------------AGTATGGTTTTGTGGTTTATGATAAGTTATATAGGTATACCATAATATGGTACTGC-------------------------------------------------------------------CAAAGCTCTTTTCAATAAAATAATATTTTTTATTTCA------------------------------------------------------------------AT------------------------------------------------TCAT----------------------------------CGTTTTGCAGGCTCTTGGAAGTCTTTACTTTGTCCATCAGGATGTTGCTTCTTTAAAAAT
droFic1 scf7180000454055:770707-771020 - GCGTACACATTTTCATGGACGAGGACTTCAAGTCGGCCGAGCATTTCACGGTGGGTTG-----AAT-ATTGTTTGTAGGTCAATTCG-AT-CATCAAAAA-T-GA---TGGATGAGCT-----GAGCCAATTAG-------------------------------------------------------------------------------------------TTTGATTTCCAATCCAAGTAATTCAAGTAT------------------------------------------------------------------------ATTAATGAAGT-CAGTGGGCCAGAGAAAAAGGAAACATTAGTCACATCCAAGTCAAAACTTAG--TGGC-CTGGGGTTT------------------------------------------A---------------------------------------------------------------------------------------------ATTTGCCAT-------------------------GG--------AT-----------------AAATTA-AA--------------------------------------------------TTATTAT-----------------TT-----TA-----CTTTTTATAGGCTCTTGGAAGTCTTTACTTCGTCCACCAGGATGTTGCGTCCCTAAAAAT
droKik1 scf7180000302388:1052258-1052351 + GCATGCATATCTTCATGGACGAGGATTTCAAGTCGGCCGAGCATTTCACGGTGAGTGAA---GAAT-CGTGTTTCTAGGTCACTTCGAAAAC------AC-C-CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13340:17468406-17468682 + GCGTGCAGATATTCATGGATGAGGACTTCAAGTCGGCCGAGCATTTCACGGTGAGCCAA----AAT-TGTGTTTCTAGGTCAACCGG-AA-CTTCAGATA-C-TCATGTG--------------------------------------------------------------------------------------------CATACAAATCGACTTGTT-ATTGATTGCTATACAATCAAAAT-----------------------------TGATCATGTATATCCCAAAATTGTTTCAATAAATAATACAAATGGTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----------------C----------------CAT-CC-TT-ATAAA--ATTTT-----------------CA-----A--ACTTTAATGATTAGGCTCTTGGAAACCTTTACTTTGTCCACCAAGACGTTGCGTCATTGAAACT
droBip1 scf7180000396721:461906-462200 - GCGTGCAAATATTCATGGATGAGGACTTCAAGTCGGCCGAATACTTTACGGTGAGTAAA----AAC-TGTGTTTCTAGGTCAACCGG-AA-CTTCAGATA-C-TAATGTG--------------------------------------------------------------------------------------------CATACAAATCGTCTTGTT-AATGTTCGATACACAATT-----------AAAATATAATTTTTTGGTGGTTTTGATCATGAATGTTTCAAAGTTTTACCGACAAATAATAAAAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT--------------------------------------------AC----------------C----------------TAT-CC-TTCATA--TAATTGT-----------------AT-----AA--CATTTATGTTCAGGCTCTTGGAAATCTTTATTTTGTCCACCAAGACGTTGCGTCGTTGAAACT
dp5 2:18192899-18192978 + GTTCATGCATATT--TGGATGAAGATTTTAAGTCAGCTGAACACTTTACGGTAAGTAAAT--A-------------AGGCCAGTCGC-AA-CTTCATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_3:540114-540193 + GTTCATGCATATT--TGGATGAAGATTTTAAGTCAGCTGAACACTTTACGGTAAGTAAAT--A-------------AGGCCAGTCGC-AA-CTTCATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004943:13857050-13857127 - ATGTTCGCATCTATATGGACGAAGACTTTCAGTCACCGGAGCATTTTACCGTGAGTAAAT--A--TGAGTATATATAGGCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12936:548846-548920 - ATATAATTTTGTTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAAAGGCCCTTGGAAACATTTACTTCGGTCACAAGGATATATGTCTATTAAGAAT
droMoj3 scaffold_6540:4249930-4250017 - AACCGTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTT-TAAA--AG--T-----------------TT-----TTAAT-TTTTCTAACAGGCACTTGGCAATATTTACTTCGGCCACAAGGATATATCTACTTTAAGAAT
droGri2 scaffold_15116:423988-424045 + ACGTTCGTATTTATATGGACGAAGATTTTAAGTCAGCGGAACATTTTACTGTGAGTAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCGTACACATCTTCATGGACGAGGACTTCAAATCGGCCGAGCACTTTACGGTGGGTGGG--TGAAT-CGTATTTCTAGGTCAATCGG-CA-CATCAAAAC-C-CAATTCGGATGAACT-----AAGGCGTT--G-----CG-----CACATATTGTTCAATTAAAATTGCGCCGAAAGCC----------TTTT------------------------------------------------------AAAAAAT------------------------------------------------------------------------ATGAATTAAGT-CACTGGGC-----------------TTAGTCAT-----------------------------------------------------------GATA-AATGAGTC--TTG---------------------------------------------------------------------------------------------AATTGACGTATCAACATACAAAAAAGTTATATCGGGTTAAACCCAA-----------------TAACCA-CA--------------------------------------------------TTATTGT-----------------AT-----TA-----TTATTTTTAGGCCCTTGGAAGTTTGTACTTTGTGCATAAGAATGTTGCTTCTCTGAAGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGGAAGTTTGTA.................................1511.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTACTTTGTGCATAAGAAT.................2311.00100010000000000000
.............................................................................................................................................................................................................................................................AT------------------------------------------------------------------------ATGAATTAAGT-CACTGGGC-----------------T.............................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
droSec2
GCGTACACATCTTCATGGACGAGGACTTCAAATCGGCCGAGCACTTTACGGTGGGTGGG--TGAAT-CGTATTTCTAGGTTAATCGG-CA-CATCAAATC-A-TAATCGG-----------------------------------------------------------CGCCGAAAGCC----------TTTT------------------------------------------------------AAAAAAT------------------------------------------------------------------------ATGAATTAAGT-CACTGGGC-----------------TTAGTCAT-----------------------------------------------------------GATA-AATGAGTC--TTG---------------------------------------------------------------------------------------------AATTGACGTATCAACATACAAAAAAGTTATATCGGGTTGAACCCAA-----------------TAACCA-CA--------------------------------------------------TTATTGT-----------------AT-----TA-----TTATTTTTAGGCCCTTGGAAGTTTGTACTTTGTGCATAAGGATGTTGCTTCTCTGAAGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTGTGCATAAGGATGTTG.............2211.0010010
........ATCTTCATGGACGAGGACTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
dm3
GCGTACACATCTTCATGGACGAGGACTTCAAATCGGCCGAGCACTTTACGGTGGGTGGG--TGAAT-CGTGTTTCTAGGTCAATCGG-CA-CATAAAAAC-C-CAATTCGGATGAACT-----GAGGCGTT--A-----CG-----CACTTATTGTTCAATTAAAATTGCGACGAAAGCC----------TTTT------------------------------------------------------AAAAAAT------------------------------------------------------------------------ATGAATTAAGT-CACTGGGC-----------------TTAGTCAT-----------------------------------------------------------GATG-AATGAGTCTCTTG---------------------------------------------------------------------------------------------AATTCACATATCAACATACAAAAATGTTATATCCGGTTAAAACAAA-----------------TACCCA-CA--------------------------------------------------TTATTGT-----------------AT-----TA-----TTATTTTTAGGCCCTTGGAAGTCTTTACTTTGTGCATAAGGATGTTGCTTCTCTGAAGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGTCTTTACTTTGTGC.........................21123.002300000000000000000000000000000000000000000000000000000023000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AGTCAT-----------------------------------------------------------GATG-AATGAGTCTCTTG---------------------------------------------------------------------------------------------AAT.........................................................................................................................................................................................................................26113.00130000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000200000000000000000000100000400010000010000001000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AGTCAT-----------------------------------------------------------GATG-AATGAGTCTCTTG---------------------------------------------------------------------------------------------A...........................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000001000010000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGGAAGTCTTTACTTTGTGC.........................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AGTCAT-----------------------------------------------------------GATG-AATGAGTCTCTTG---------------------------------------------------------------------------------------------AA..........................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000100000
..............ATGGACGAGGACTTCAAATCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ATGAACT-----GAGGCGTT--A-----CG-----CAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AGTCAT-----------------------------------------------------------GATG-AATGAGTCTCTTG---------------------------------------------------------------------------------------------............................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCA-CA--------------------------------------------------TTATTGT-----------------AT-----TA-----TTA.........................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCTTGGAAGTCTTTACT...............................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................C-CAATTCGGATGAACT-----GAGGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTGCATAAGGATGTTGC............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGGAAGTCTTTACTTTGTGCATAAGGA..................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAGGATGTTGCTTCTCTGAAGAT2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATACAAAAATGTTATATCCGG........................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGTGCATAAGGATGTTG.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................AGTCAT-----------------------------------------------------------GATG-AATGAGTCTCTTG---------------------------------------------------------------------------------------------AAA.........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATGGACGAGGACTTCAAATCGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TTCAATTAAAATTGCGACGAAAGCC----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGAGGACTTCAAATCGGCCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CTGGGC-----------------TTAGTCAT-----------------------------------------------------------GATG-A.....................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CATGGACGAGGACTTCAAATCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCATAAGGATGTTGCTT..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................AT------------------------------------------------------------------------ATGAATTAAGT-CACTGGGC-----------------T.............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTGCATAAGGATGTTGCTTCTCT......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCATGGACGAGGACTTCAAATCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................AATTCGGATGAACT-----GAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................AGTCAT-----------------------------------------------------------GATG-AATGAGTCTC............................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGTGCATAAGGATGTTGCTTCTC.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TGGG--TGAAT-CGTGTTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATAAGGATGTTGCTTC.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTGCATAAGGATGTTG.............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTACTTTGTGCATAAGGAT.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGGGTGGG--TGAAT-CGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AGTCAT-----------------------------------------------------------GATG-AATGAGTCTCTTG---------------------------------------------------------------------------------------------AAAA........................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................ACGGTGGGTGGG--TGAAT-CG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................GAGGACTTCAAATCGGCCGAGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GGTGGG--TGAAT-CGTGTTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTGTGCATAAGGATGTTGCTTC.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....ACACATCTTCATGGACGAGGACTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CTTCATGGACGAGGACTTCAAATCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GTACACATCTTCATGGACGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AGTCAT-----------------------------------------------------------GATG-AATGAGTCTCTTG---------------------------------------------------------------------------------------------AATT........................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......CATCTTCATGGACGAGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTACTTTGTGCATAAGGATGTTGC............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGGGTGGG--TGAAT-CGTGTTTCTAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATAAGGATGTTGCTTCT........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................ACGAGGACTTCAAATCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................AATTAAAATTGCGACGAAAGCC----------T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..................................................GTGGGTGGG--TGAAT-CGTGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.................................................GGTGGGTGGG--TGAAT-CGTGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCATAAGGATGTTGCTTCTC.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----TTATTTTTAGGCCCTTGGAAAA......................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGCTTCTCTGAAGAT2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
droEre2
GCGTACACATCTTCATGGACGAGGATTTCAAATCAGCCGAGCACTTTACGGTGGGTG------AAT-CGTGTTTCTAGGTCAATCGG-CA-CATCAAAAC-C-CAATTCAGATGAACT-----GAGGCGTT-AA-----CG-----CACTTATTGTTCAATTGAAATTGAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAAGT--ACTGGGC-----------------TTAGTCAT-----------------------------------------------------------GATG-AATGAGTC--TTG---------------------------------------------------------------------------------------------AATTCATATATTAACAAAC-----------------------CCAA-----------------AAAACAAGATT----------------C----------------TAT-TT-CATTTC--TAATTGT-----------------TCAAAAAAA--TATGTATCTTTAGGCCCTTGGAAGTCTCTACTTTGTGCATAAGGATGTTGATTCTCTGAAGATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTGGAAGTCTCTACTTTGT...........................2311.0010000100
droYak3
GCGTACACATCTTCATGGACGAGGACTTCAAGTCAGCCGAGCACTTTACGGTGGGTG------AAT-CGTGTTTCTAGGTCAATCGG-CA-CATCAAAAA-C-CAATTCAGATGAACT-----GAGGCGTT-AA-----CG-----CA-----------ATTACAATTTCGCCGAAAGCA----------TCAT------------------------------------------------------G-AAAAT------------------------------------------------------------------------ATGAATTCAAT-CACTGGGC-----------------TTAGTCAT-----------------------------------------------------------GATG-AATGGGTC--TTG---------------------------------------------------------------------------------------------AATTCCTATATCAACAGATACGCGTATTATTTCCGGTCAAGCCCAA-----------------AAACAA-CATT----------------T----------------TATT--TATT-----TTATTGT-----------------AT-----TATAT-TTTATTTTTAGGCCCTTGGAAGTCTCTACTTTGTGCATAAGGATGTTGATTCTCTGAAGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........TTCATGGACGAGGACTTCAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEug1
GCGTACACATCTTCATGGACGAGGACTTCAAGTCGGCCGAGCACTTTACGGTGAGTGAA----TAT-TGTGTTTCTAGGTCTATCGG-CA-TATCAACAACACAAATTCTGATGATTT-----AAGGCATTTAA-----AG-----CACTCATTCTTTAATTAAAAGTATAC-GAAAATA-------------------------------------------------------------------------------------------------------------------------------------ATTGTTCTTTAAATTGTTATTAAGTTCAGTAGTC-----------------TTAGTCAT-----------------------------------------------------------GAGG-GATGAGTT--GAT---------------------------------------------------------------------------------------------ATTTCACTTATCAACAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCGTACACATCTTCATGGACGAGGACTTCAAGTCAGCCGAGCACTTTACGGTGGGTGAA------TCCGTGTTTCTAGGTCAATCGGGCG-CATCGACAA-A-TGATTCGGATGAGAAGAGATGAGGCGTA--GGGCTACGGGAATCAC---TTGTTCAATTAAAAGTATACCGAAAATG----------TTTC------------------------------------------------------A--GAAC------------------------------------------------------------------------TTCAATTAAGT-CACTGGGC-----------------TTAGTCAC-----------------------------------------------------------GGAG-CATGAGTT----GGTTTCCATTCATCAGAGAACCGCCATTTCCGTGCTTCTTTAAAACTCGTACGCCAAAAAACACACAGCTGTGCTCAAAAATATAGTGTTT----------------------------------------------------------------CGAAA-AA-CAAAGCTTAGTACTGATAACTAAATTAGAACCAACTGTAAT--TTTT-TAAA--AT--TTCTAATGA-----------------TAAC-TTTATTTTTAGGCCCTTGGAAGTCTGTACTTTGTCCATAAGGATGTGGCTTCCTTGAAAATSizeHit CountTotal NormTotal
No Reads
droTak1
GCGTACACATCTTCATGGACGAGGACTTCAAGTCAGCCGAGCATTTCACGGTGGGTT------AAT-CGTGTTTCTAGGTCAATCGGGCG-CGTCGAAAA-A-AGATTGGGATGAGCT-----CAGGCATTTAA-----AG-----CGCCCATTGTTCAAT-GAGGGTATACCGAAAATA----------TT-T------------------------------------------------------AAAAAAT------------------------------------------------------------------------TTTAATTAACT-CGCTGGGT-----------------TTAGTCAT-----------------------------------------------------------GATATGGTGACTC--TTT--------------------------------------------------------------------------------------------TATTTCATTCATCAACAAACA----------------TCAAACTAAGTGGGAAAAATATTTTTGAAAAAA-CATT------------TAACT----------------TAT-TT-TGTAAA--TATTTAT-TTAATTATATTTATGTA--------TAT-TCAATTTTTAGGCCCTGGGAAGTCTATATTTTGTCCATAAGGATGTTACTTCCTTGAAAATSizeHit CountTotal NormTotal
No Reads
droEle1
GCGTACACATCTTCATGGACGAGGACTTCAAGTCGGCCGAGCACTTTACGGTGAGTTAACGTAGAC-CGTGCTTCCAGCT---------A-CATAAAAAA-C-TATTTTGAATGAGCT-----AAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GCGTACACATCTTCATGGACGAAGACTTCAAGTCAGCCGAGCATTTCACGGTGAGTG------AAT-CATGTTTCCAGGTTCATCGG-AG-CATCAAAAA-C--AGCTTGGATAAGCT-----ATGTAGCT-C----TCCG-----TA---------------------TTCCAAAAATATTTAAAAGTATAACACAATATACATACATATCTCTATATTTAATCTTC-------------------------ATA----------------------------------------------------------------------------TAATTT-CAAGAAACCACATTAATAGGAT---------------------------AGTATGGTTTTGTGGTTTATGATAAGTTATATAGGTATACCATAATATGGTACTGC-------------------------------------------------------------------CAAAGCTCTTTTCAATAAAATAATATTTTTTATTTCA------------------------------------------------------------------AT------------------------------------------------TCAT----------------------------------CGTTTTGCAGGCTCTTGGAAGTCTTTACTTTGTCCATCAGGATGTTGCTTCTTTAAAAATSizeHit CountTotal NormTotal
No Reads
droFic1
GCGTACACATTTTCATGGACGAGGACTTCAAGTCGGCCGAGCATTTCACGGTGGGTTG-----AAT-ATTGTTTGTAGGTCAATTCG-AT-CATCAAAAA-T-GA---TGGATGAGCT-----GAGCCAATTAG-------------------------------------------------------------------------------------------TTTGATTTCCAATCCAAGTAATTCAAGTAT------------------------------------------------------------------------ATTAATGAAGT-CAGTGGGCCAGAGAAAAAGGAAACATTAGTCACATCCAAGTCAAAACTTAG--TGGC-CTGGGGTTT------------------------------------------A---------------------------------------------------------------------------------------------ATTTGCCAT-------------------------GG--------AT-----------------AAATTA-AA--------------------------------------------------TTATTAT-----------------TT-----TA-----CTTTTTATAGGCTCTTGGAAGTCTTTACTTCGTCCACCAGGATGTTGCGTCCCTAAAAATSizeHit CountTotal NormTotal
No Reads
droKik1
GCATGCATATCTTCATGGACGAGGATTTCAAGTCGGCCGAGCATTTCACGGTGAGTGAA---GAAT-CGTGTTTCTAGGTCACTTCGAAAAC------AC-C-CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GCGTGCAGATATTCATGGATGAGGACTTCAAGTCGGCCGAGCATTTCACGGTGAGCCAA----AAT-TGTGTTTCTAGGTCAACCGG-AA-CTTCAGATA-C-TCATGTG--------------------------------------------------------------------------------------------CATACAAATCGACTTGTT-ATTGATTGCTATACAATCAAAAT-----------------------------TGATCATGTATATCCCAAAATTGTTTCAATAAATAATACAAATGGTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----------------C----------------CAT-CC-TT-ATAAA--ATTTT-----------------CA-----A--ACTTTAATGATTAGGCTCTTGGAAACCTTTACTTTGTCCACCAAGACGTTGCGTCATTGAAACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCCACCAAGACGTTGCGTCATT......2611.001100000
droBip1
GCGTGCAAATATTCATGGATGAGGACTTCAAGTCGGCCGAATACTTTACGGTGAGTAAA----AAC-TGTGTTTCTAGGTCAACCGG-AA-CTTCAGATA-C-TAATGTG--------------------------------------------------------------------------------------------CATACAAATCGTCTTGTT-AATGTTCGATACACAATT-----------AAAATATAATTTTTTGGTGGTTTTGATCATGAATGTTTCAAAGTTTTACCGACAAATAATAAAAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT--------------------------------------------AC----------------C----------------TAT-CC-TTCATA--TAATTGT-----------------AT-----AA--CATTTATGTTCAGGCTCTTGGAAATCTTTATTTTGTCCACCAAGACGTTGCGTCGTTGAAACTSizeHit CountTotal NormTotal
No Reads
dp5
GTTCATGCATATT--TGGATGAAGATTTTAAGTCAGCTGAACACTTTACGGTAAGTAAAT--A-------------AGGCCAGTCGC-AA-CTTCATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............T--TGGATGAAGATTTTAAGTCAGCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000020
............................TAAGTCAGCTGAACACTTTACGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000020
droPer2
GTTCATGCATATT--TGGATGAAGATTTTAAGTCAGCTGAACACTTTACGGTAAGTAAAT--A-------------AGGCCAGTCGC-AA-CTTCATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................AAGATTTTAAGTCAGCTGAACAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
droWil2
ATGTTCGCATCTATATGGACGAAGACTTTCAGTCACCGGAGCATTTTACCGTGAGTAAAT--A--TGAGTATATATAGGCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........ATCTATATGGACGAAGACTTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
droVir3
ATATAATTTTGTTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAAAGGCCCTTGGAAACATTTACTTCGGTCACAAGGATATATGTCTATTAAGAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCGGTCACAAGGATATATGTCT.........2511.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTCACAAGGATA................1511.001000000000000000000000000000000000000000000000100000000000000000
droMoj3
AACCGTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTT-TAAA--AG--T-----------------TT-----TTAAT-TTTTCTAACAGGCACTTGGCAATATTTACTTCGGCCACAAGGATATATCTACTTTAAGAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACGTTCGTATTTATATGGACGAAGATTTTAAGTCAGCGGAACATTTTACTGTGAGTAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:58 AM