ID:

dsi_18279

Coordinate:

3r:10170861-10170917 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10170615_10170860_+]; CDS [3r_10170615_10170860_+]; CDS [3r_10170918_10171102_+]; exon [3r_10170918_10171176_+]; intron [3r_10170861_10170917_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------################################################## ACTTTTCATTTGGGGTGTACTCAAACAGAAGCAATCACCACAGCAATCCGGTAAGCGGATACCTACTGCATGTATAGTTTTTCTTGAAATTTGACATTTTTTTTCAGGCGAAGAATCAGTGAATTTGGTAGCCCAGCGAGCTTTGCTTCTTGTGCAA ************************************************............((.....((((..((((((....))))))..))))........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR902009 testis	M053 female body	SRR553488 RT_0-2 hours eggs
...................................................................................................TATTTCAGCCAAAGAATCAGTGA...................................	23	3	1	2.00	2	0	2	0	0	0	0	0
..................................................................................................................................GCCCAGCGAGCTTTGGTTGTTT.....	22	3	1	1.00	1	0	0	0	1	0	0	0
...TTTCATTTGGGGTGTACTTAAAAAGA................................................................................................................................	26	2	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................TTTCAGGCGAAGAATCAGTG....................................	20	0	1	1.00	1	0	0	0	0	1	0	0
.........TTGGGGTGTACTCAAACAGAAGCAAT..........................................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................................AATTTGGTAGCCCAGCGAGCTTTGC...........	25	0	1	1.00	1	0	0	1	0	0	0	0
.......................................................................................................TCCGGCGAAGAATCAGTGAATTTGGTAGC.........................	29	1	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................TATCCCAGCCAGCTTTGCTTCGT......	23	3	1	1.00	1	0	0	0	1	0	0	0
...............AGTACTCAAACAGAAGGATTCA........................................................................................................................	22	3	2	0.50	1	0	0	0	0	1	0	0
.................................ATCCCCACAGCAATCCGGCGA.......................................................................................................	21	3	6	0.17	1	0	0	0	0	0	1	0
.................................................................................................TTTTCTTCAGGCGAA.............................................	15	1	18	0.06	1	0	0	0	0	0	0	1

Anti-sense strand reads

TGAAAAGTAAACCCCACATGAGTTTGTCTTCGTTAGTGGTGTCGTTAGGCCATTCGCCTATGGATGACGTACATATCAAAAAGAACTTTAAACTGTAAAAAAAAGTCCGCTTCTTAGTCACTTAAACCATCGGGTCGCTCGAAACGAAGAACACGTT ************************************************............((.....((((..((((((....))))))..))))........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	O001 Testis	SRR902008 ovaries	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
..................................................................................................................................CGGGTCGCTCGAAACGAA.........	18	0	1	1.00	1	1	0	0	0	0	0
.............................TCGTTAGTGGTGTCGTTAGGC...........................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0
........................................................................ATATCAAAAAGAACTTTA...................................................................	18	0	1	1.00	1	0	1	0	0	0	0
...................GAGTTGGTCTTCGTTAGGG.......................................................................................................................	19	2	2	0.50	1	0	0	0	1	0	0
...AAAGAAAACCTCAGATGAGTT.....................................................................................................................................	21	3	11	0.09	1	0	0	0	0	1	0
.......................................TGTCGTTAGTCCATT.......................................................................................................	15	1	13	0.08	1	0	0	0	0	0	1

Generated: 04/24/2015 at 10:35 AM