ID:

dsi_18238

Coordinate:

3l:7920442-7920496 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7920206_7920441_+]; CDS [3l_7920206_7920441_+]; CDS [3l_7920497_7920994_+]; exon [3l_7920497_7920994_+]; intron [3l_7920442_7920496_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------################################################## ATCCGTGGCGCTATTGTAGATGCTATTGTGCACGCCCCCGAGCTGATTAGGTGGGTAAATTCATTGAAAATCCTATCCAGGGAGCTAATTTCGTTTTGTACACAGGGTACAGTTGTCCGTCTGCGTCAATCACATCATTAAAAGCGATTTCCCCG ************************************************(((..((((...........((((.....))))...........))))..)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M023 head	M024 male body	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
ATCCGTGGCGCTATTGTAGAT......................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0
...............GTAGATGCTATTGTGCACGCC.......................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0
.............TTGTAGATGCTATTGTGCACGCCCCC....................................................................................................................	26	0	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................................AATCACATCATTAAAA............	16	0	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................ACAGTTGTCCGTCTGCGTCA...........................	20	0	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................CGTCTGCGTCAATCACATC...................	19	0	1	1.00	1	0	0	0	0	1	0	0
....................................................................AATCCTATCCGGGGAGCCA....................................................................	19	2	2	0.50	1	1	0	0	0	0	0	0
.....................................................................ATCCTACCCGGGGAGCCA....................................................................	18	3	20	0.15	3	3	0	0	0	0	0	0
......................................................................TCCTATCCGGGGAGCCA....................................................................	17	2	9	0.11	1	1	0	0	0	0	0	0
.......TCGCGATTGTAGATGTTATT................................................................................................................................	20	3	11	0.09	1	0	0	0	0	0	0	1
................GAGATGCTATTGTGCTC..........................................................................................................................	17	2	13	0.08	1	0	1	0	0	0	0	0
ATCCGTGGCGCAATGGTA.........................................................................................................................................	18	2	14	0.07	1	0	0	0	0	0	0	1
......................................CAAGCTGAATACGTGGGT...................................................................................................	18	3	20	0.05	1	1	0	0	0	0	0	0
.......................................................................CCTATTCAGGGAGCCA....................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0

Anti-sense strand reads

TAGGCACCGCGATAACATCTACGATAACACGTGCGGGGGCTCGACTAATCCACCCATTTAAGTAACTTTTAGGATAGGTCCCTCGATTAAAGCAAAACATGTGTCCCATGTCAACAGGCAGACGCAGTTAGTGTAGTAATTTTCGCTAAAGGGGC ************************************************(((..((((...........((((.....))))...........))))..)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
.........................................................................................................................ACGCAGGTAGTATAGTAA................	18	2	5	0.40	2	2	0	0
.........................................................................ATAGGCCCCTTGATTAAA................................................................	18	2	7	0.14	1	0	1	0
...........................................................................AGGTCCCTCGGTTAA.................................................................	15	1	10	0.10	1	0	0	1

Generated: 04/24/2015 at 10:33 AM