ID:

dsi_18236

 Coordinate:

3r:16504036-16504185 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.5 -22.0 -21.9 -21.9

Flybase annnotation

five_prime_UTR [3r_16503223_16503990_+]; CDS [3r_16503991_16504035_+]; exon [3r_16503223_16504035_+]; intron [3r_16504036_16505616_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAGCGTTTTTAACTGCTGAAAATACCATTTACCATGTATATAAGAATGGAACCCGCATGTGTATGCGGTGGCTGTGTGTGTGTGTTCGTGATGCTCATGCGGCTATTTGAAAAAGTTCGCCTAGAAATTTATTGATTTCATAACACACTAATGTCTCTATCGCTCGTTTTACAACGGTGAATCGTGTCGGTGTCA
************************************************************.......(((.((((.(((((((.(((((((((((((....(((...)))....)))))))).))).)).))).)))).))))...........)))********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M024
male body		 O001
Testis
 O002
Head
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR902008
ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...........................................................................................................................................................................................................................CGTTTTACAACGGTGAATCGT.......... 21 0 1 3.00 3 0 0 0 1 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CGGTGAATCGTGTCGGTGTCA 21 0 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................AACGGTGAATCGTGTCGGTGT.. 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
................................ACAGGTCTAGAGCAGCAAGT...................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................CAGGTCTAGAGCAGCAAGT...................................................................................................................................................................................................... 19 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
...........................................................................................................................................................................................................TAATGTCTCTATCGCTCGTT........................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CTCTATCGCTCGTTTTACAAC.................... 21 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0
.........................AAATGGCACAGGTCTAGAG.............................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................TGGCACAGGTCTAGAGCAGCAAGTT..................................................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GTTCGTGATGCTCATGCGG............................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................TATTAACCAAAATGGCACAGGTCTAGA............................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................TTTTTAACTGCTGAAAATACC......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................CAGGTCTAGAGCAGCAAG....................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TGTGTGTTCGTGATGCTCA.................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................TCATGCGGCTATTTGAAAAAG................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCTGTGTGTGTGTGTTCGTGA........................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................AATGGCACGGGTCTAGAGCAG........................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGTTTTACAACGGTGAATCGG.......... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................TGTGTATGCGCTGGCTGTG....................................................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................AAGTAGCGTTTTTAACTGCTG................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................CACAGGTCTAGAGCAGCAAGT...................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TATCGCTCGTTTTACAACGGT................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................TGGCACAGGTCTAGAGCAGCAAGT...................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AATGTCTCTATCGCTCGTTTT......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TACAACGGTGAATCGTGTCGGAA... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TTTTTGACTGCTGAAAATACC......................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................CACAGGTCTAGAGCAGCAAGTA..................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................CAGGTCTAGAGCAGCAA........................................................................................................................................................................................................ 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....ATGAGTAATGCTATTAACCAA................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................GTGTGTGTTCGTGATGCTCAT................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................AATGGCACAGGTCTAGAGCAGTT......................................................................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGTATATAAGAATGGAACCCG............................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................GCACAGGTCTAGAGCAGCAAG....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................GCGGTGGCTGTGTGTGTGTGT.............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GTGTTCGTGATGCTCATG................................................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................AGGTCTAGAGCAGCA......................................................................................................................................................................................................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................ATGGCACAGGTCTAGAGCA............................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................TGTGTGTGTGTGTTCCTGATG...................................................................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGTTGAAAATACCATTGTCCAT................................................................................................................................................................ 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................ATGGCACAGGTCTGGAGCAGTT......................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TAATGTCTCTATCGCT............................... 16 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................CTTGCGTCTATTTGAAAAA................................................................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................TTTACCAAAATGGCACA....................................................................................................................................................................................................................... 17 1 8 0.25 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATCGATCGTCTTAAAACGGT................. 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............TGCTGTTAACCGAAATGGAAC........................................................................................................................................................................................................................ 21 3 11 0.18 2 0 0 0 0 0 0 0 2 0 0 0 0 0
...........................................................................................................................................TTGGTGAAGCTCATGCGGCG........................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................TTACCAAAATGGCACA....................................................................................................................................................................................................................... 16 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............TGCTATTGACCAAATTGG........................................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................TGCGCTGACTGTGTGTGTGTGT.............................................................................................................. 22 2 16 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................TGTGGCTGTGTGTGTGTGTT............................................................................................................. 20 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..AATATGAGTAATTCTTTTA..................................................................................................................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................GCTGTGTGTGTGTGTT............................................................................................................. 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TATTATACTCATTACGATAATTGGTTTTACCGTGTCCAGATCTCGTCGTTCATTCATCGCAAAAATTGACGACTTTTATGGTAAATGGTACATATATTCTTACCTTGGGCGTACACATACGCCACCGACACACACACACAAGCACTACGAGTACGCCGATAAACTTTTTCAAGCGGATCTTTAAATAACTAAAGTATTGTGTGATTACAGAGATAGCGAGCAAAATGTTGCCACTTAGCACAGCCACAGT
*********************************************************************************************.......(((.((((.(((((((.(((((((((((((....(((...)))....)))))))).))).)).))).)))).))))...........)))************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
.............................CCGTGTCCAGATCTCGTCGTT........................................................................................................................................................................................................ 21 0 1 4.00 4 2 0 2 0 0 0 0 0 0 0 0
..................................TCCAGATCTCGTCGTTCATTC................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CCGACACACACACACAAG............................................................................................................ 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.............................CCGTGTCCAGATCTCGTCG.......................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................TACCTTGGGCGTACACATACG................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................GTCCAGATCTCGTCGTTC....................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GTTACAGAGGTAGCGAGCAAAA......................... 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................CACCGACACACACACACAA............................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AGAGATAGCGAGCAAAATGTT..................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
............................ACCGTGTCCAGATCTCGTCGTT........................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................CCCGTGTCCAGATCTCGTCGT......................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CAGAGGTAGCGAGCAAGATG....................... 20 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................CAAGCACTACGAGTACGCC............................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................AGCACTACGAGTACGCCGATAAA....................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................TCAAGCGGATCTTTAAATAA.............................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................CTTACCTTGGGCGTACAC...................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................ACCGTGTCCAGATCTCGTCGT......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................TACCGTGTCCAGATCTCGT............................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................GAGATAGCGAGCAAAATG....................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAACTAAAGTATTGTGTGATT............................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................ACACACAAGCACTGCGAGTAC................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................GGTCCAGATCTCGTCGTTC....................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGTTACAGAGGTAGCGAGCAAA.......................... 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................TACCGTGTCCAGATCTCGTCG.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.........................................................................TTTTATGGTAAATGGTAC............................................................................................................................................................... 18 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
....................................CAGATCTGGTCGTTC....................................................................................................................................................................................................... 15 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................AAGCTCTACGAGGACGCC............................................................................................. 18 2 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................CAGAATGCTGCCAGTTAG............ 18 3 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:16503986-16504235 + dsi_18236 ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTT----TTT-------------------------------------------------------------AA--------------CTG-CTGAAAAT-ACC---------ATTTACC----------AT-------GTATATAAG-----AAT-------------GGAACCCG-------------------------------CATGTGTATGC-----------------------------------------GGTGG----CT----GTGTG------TGTGTGTT-----------------CGTGATGCTCATGCGG-----------CTATTT-------GAAAAAG----TTCG-------C--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTCGTTTTACA-----------ACGGTGAATCGT---GTCGGTGT---CA
droSec2 scaffold_0:17367841-17368096 + dse_556 ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTT----TTT-------------------------------------------------------------AA--------------CTG-CTGAAAAT-ACCATGTA--CCATTTACC----------AT-------GTATATAAG-----AAT-------------GGAACACG-------------------------------CATGTGTATGC-----------------------------------------GGTGG----CT----GTGTG------TGTGTGTT-----------------CGTGATGCTCATGCGG-----------CTTTT--------GAAAAAG----TTCG-------C--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTCGTTTTACA-----------ACGGTGAATCGT---GTCGGTGT---CA
dm3 chr3R:4485485-4485734 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTT----TTT-------------------------------------------------------------AA--------------CTG-CTGAAAAT-ACC---------ATTTACC----------AT-------CTATATAAG-----AAT-------------GGAACACG-------------------------------CATGTGTATGC-----------------------------------------GGTGG----CT----GTGTG------TGTGTGTT-----------------CGTGATGCTCATGCGG-----------CTATTT-------GAAAAAG----TTCG-------C--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTCGTTTTACA-----------ACGGTGAATTGT---GTCGGTGT---CA
droEre2 scaffold_4770:17100693-17100947 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTT----TTT-------------------------------------------------------------AA--------------ATG-GTGAAAAT-ACC---------ATTTACC----------AT-------GTACATAAG-----AAT-------------GGTATATGCATATGTG-------------------------TGTGTATG--------TAC-------------------------------GGTGA----GTGCGT--GCG------TGTGTGTG-----------------CATTATGCTCATGCGG-----------CT------------AAAATG----TTCG-------C--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTCTTTTTACA-----------ACGGTGAATCGT---GTCGGTGT---CA
droYak3 3R:8548354-8548616 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAGTAGCGTT----TTT-------------------------------------------------------------TA--------------CTG-GTGAAATT-ACC---------ATTTACC----------AT-------GTATATAAG-----AAT-------------AGTATATGCATATGTGTG---------------------TATGTATATAC-----------------------------------------GATGA----GTGCCT----G------TGTGTGTG-----------------CGTGATGCTCATGCGG-----------CTATTT-------GAAAAAG----TTCG-------C--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTCTTTTTACA-----------ACGGTGAATCGT---GTCGGTGT---CA
droEug1 scf7180000409490:239679-239945 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTT----TTT-------------------------------------------------------------AA--------------CTGGGT-AAAAA-ACC-----------TTACCTATCTAT-------------TCTATAAG-----AAA-------------AGTACATC-------------------------------CA--TATATACA---------GTGA------------------------GTGGATGAGTGAGTGCGTG--CG----TGTGTGTGTA-----------------AGTGATGCTCATGCGG-----------CTATTCGG-----GAAAAAG----TTCG-------G--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTC-TTTTACA-----------ACGGTGAATCGT---GTCGGTGA---CG
droBia1 scf7180000302402:7188833-7189115 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTT----TTT-------------------------------------------------------------AA--------------CTGGGCGAAAAT-GCC----------------CGTC------TT-------CTATATAGG-----AAA-------------AGTAC----GTATGTGTGCA---------------CC--TATGTACATGC----ACACACGCGG------------------------GCGAGTGAGTAATTGCGT--GCG------TGTGTGTG-----------------CGTGATGCTCATGCGG-----------CTGTTGGGGGAAAAAAAAAG----TTCG-------G--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTC-TTTTACA-----------ACGGTGAATCGC---GTCCGTGG---CT
droTak1 scf7180000415417:547892-548152 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTT----TTT-------------------------------------------------------------GA--------------CTGGGTGAAAAT-ACC---------GTCTAC---------------------TACATAAGA----AAA-------------AGTAT----ATATGTACG---------------------CATGTATATGC-----------------------------------------AGTGAGTAAGTGCGT--GCG------TGTGTGTG-----------------AGTGATGCTCATGCGG-----------CTATTGGG-----GAAAAAG----TTCG-------G--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTC-TTTTACA-----------ACGGTGAATCGT---GTCGGTGT---CT
droEle1 scf7180000491212:1325922-1326156 + ATAATATGAGTAATGCTATCAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTT----ATA-------------------------------------------------------------AA--------------GTG-GTGAAAAT-ACA---TACTACATATA-C----------AT-------ATATATAAG-----AAA-------------AGTAC--------------A-----------------------TATATAC-----------------------------------------AATGA----GTGAGT--GCG------TGTGTGTG-----------------AGTGATGCTCATGCGG-----------CTATTG-------GAAAAAG----TTCG-------G--CT------AGAA-AT------------TTATTGATTTCATAACACACCAA-TGTCTC-------------TATTGCTC-ATTTACA-----------AC------------------TGC---CT
droRho1 scf7180000778820:16948-17189 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTT----ATC-------------------------------------------------------------A----------------TA-GTGAAAAT-AAA---TA------CTA-C----------AT-------ATATATAGG-----AAA-------------AATAC--------------A-----------------------TATATAC-----------------------------------------AGTGA----ATGAGT--GCG------TGTGTGTG-----------------AGTGATGCTCATGCGG-----------CTATTG-------GAAAAAG----TTCG-------G--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTC-TTTTACA-----------ACGGTGAATCGG---GTTCGTGT---GG
droFic1 scf7180000454106:2680440-2680684 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTT----AAT-------------------------------------------------------------AA--------------CTG-GTGAAAAT-A-------------TTAC-----------AT-------ATAGA-AAGA----AAA-------------ACTAC-----------------------------------TTGTATATAC-----------------------------------------AGTGA----GTGCAT--GTG------TGTGTGTG-----------------AGTGATGCTCATGCGG-----------CTATTG-------GAAAAAG----TTCG-------G--CT------AGAA-AT-----------TTTATTGATTTCATAACACACTAA-TGTCTC------------GTATCGCTT-TTTTACA-----------ACGGTGAATCGT---GTCGGTGT--GGA
droKik1 scf7180000302690:122075-122315 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGTG----A---------------------------------------------------------------GA--------------GGG-GTGGAAAT-A-----TA---------C--------TACACA-T----GAAA----------AAA--AGTAATGTTCAACTA-----------------------------------TATGTATATC--------------------------------------------TGA----GTGAGTGTGTG------TGT----G-----------------TGTG------ATGCGG-----------CTAGTG-------GACAATG----TTCG-------G--CT------AAAA-AT------------TTATTGATTTCATAACA--CTAA-TGTCTC------------GTATCGCTC-TTTTACA-----------ACAGTGAATCAA---GTACATGATAGGA
droAna3 scaffold_13340:18721657-18721873 - dan_3165 ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---TAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTGTACA-----------------------TATATATATTGC--CATG------------------------------TGTGT----GTGTGT--GTGTGTGTTTGAGTGTG-----------------AGTGA----CATGCGG-----------CTGTTG-------GAGAGTG----TTCG-------G--CT------AAAA-AT------------TTATTGATTTCATAACACACAAA-TGT-------------------GGTTC-TTTTACA-----------ACGGTGTATCGT---GTAGGTGAACCAA
droBip1 scf7180000395652:448726-448930 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---TAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTGTACA---------------TA--TATATATATTG----C------------------------------------CATGT----GT------GTG------TGTGTGTG-----------------CGTGAGTGACATGCGG-----------CTGTTG-------GAGAGTG----TTCG-------G--CT------AAAA-AT------------TTATTGATTTCATAACACACAAA-TGT-------------------GGTTC-TTTTACA-----------ACGGTGAATCGT---GTAGGTGA----A
dp5 2:17205222-17205542 + dps_601 ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGCA----AAT--------------------------------------GAAATGTCGTCTGTTGGTTAGTCGAGTGGTGGGGGAATCCTGGGCG-AAAT-A------------------TATATATTATA-------C---GG----A----AAA--AGT--------ATTATATGCATATGTA--GA---------------CA--TATGTATATCC-----------------------------------------GTT-------CGACTGTGTG------TGT----GTGCGA--CAGTTTGTATGACGAGGCTCATGCGG-----------TTATTG-------GACAATG----TTCG------GG--CT------AAAA-AT------------TTATTGATTTCATAACACACAAA-TGTCTCTGGCTGTCAAGCGTATCTCTC-ATTTACA-----------ACGGTGAACTGT---GTACGTG----CA
droPer2 scaffold_0:11043346-11043670 + dpe_476 ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGCA----AAT--------------------------------------GAAATGTCGTCTGTTGGTTAGTCGAGTGGTGGGGGAATCCTGGGCG-AAAT-A------------------TATATATTATA-------C---GG----A----AAA--AGT--------ATTATATGCATATGTA--GA-------------CATATGTATGTATATCC-----------------------------------------GTT-------CGACTGTGTG------TGT----GTGCGA--CAGTTTGTATGACGAGGCTCATGCGG-----------TTATTG-------GACAATG----TTCG------GG--CT------AAAA-AT------------TTATTGATTTCATAACACACAAA-TGTCTCTGGCTGTCAAGCGTATCTCTC-ATTTACA-----------ACGGTGAACTGT---GTACGTG----CA
droWil2 scf2_1100000004943:8768672-8768810 + ATAATATGAGTAATGCTAT---CCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTGCGATT-----------------------------------------------------------------------------------------AT-A----------------C-----------AT-------ATA---------------------------------C------------A-------------------TATATGTATGT------------------------------------------GTGA----CCATGTATATG------TGT----G-----------------TA---------------------------------------------------TG-------G--CT------AGAA-AT------------TTATTGATTTCATAACACACT-----------------------------------------------------------------------------
droVir3 scaffold_12855:8162773-8163161 + dvi_4447 ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---GGAA----CTT------GTGTATGTGTGCGTGTGTTTGTGTGTGAATGTAAAATGTGGTGCG---------------GTG-------------CA-AAAG-A-----GGG----------TATAT-------AATGGAA---GA----A----AAAAAA----------A---C----GTAATGGTACATTT-------GTGCA----TATGTGTG--------------TTAGCTGTGTCAGCTAAAAGTGGTTCTG----TGT----GTGAGTG--GC------CAT----GTGTGAAAGAGT-----CGGCGATGCTCATGCGGTCCGCACACGATTATTG-------AACAGTG----TTCAGT-GAGGG--CT------CTAA-CTTTTTTTTTTTTTTTATTGATTTCATAACATATAAAACGTCT--GACCGTGGAACGCGTTGCGC-TTTTACATTTTGCAACGAACTGTAACTCGT---GTACGTAT---AA
droMoj3 scaffold_6540:23396479-23396835 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---TGTA----CTT------GTATATGTG------------------AATGTAAAATGTGGTTTG---------------GTG-------------CA-AAAT-A-----GGG----------TACAT-------AATG-------G----AAAAAAAA-------------TGTAC--------------ATTTACCTTTGGTGTATT--TGTGTGTGTGT----ATGTGTGTTAGCTGTGTCAGCTAAAAGTGTGTCTT----TGT----GTGAGTG--TG------CAT----GTGTGAAAGAGT-----CGGCGATGCTCATGCGGTCTGCACACGATTATTG-------AACAGTG----TTCAGTCGAG--TTCTA----AAAAAATT--------TTTTTTATTGATTTCATAACATACAAAACGTTT--GACCGTGGAATTTGGTGTGC-TTTTACATATTGCA----ACGA------------------G---CA
droGri2 scaffold_15074:4770948-4771325 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---GGCG----GATACATCCGTGGATGTGAATGTGGATGTCGTTGTGAA---------------------TGTTCAAGTGCTA-------------CA-ATAGAA-----GGG----------TACAT-------AATGGATAAAAAGAAG-----AAAAAAAC--------AGTA-ATGTAC--------ATGTAGCGTTGCTACACG--TGTGTGTGTG--------------------------------------------TGA----GTGCGTGTGTG------TGT----GTGTGAAAGTGT-----CTGTGATGCTCATGTGG-----------TTATATTGTG---AACACCGATTCTTCACTCGAGGGTTCCACAAAAAAAA-AT------------TTATTGATTTCATAACACA-AAA-TGTCTG--ACCGTGGAGCGCATTGCGC-TTTTACATTTTGCAGCGAACGGTGACTCGTCGTGTACATAT-ACGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTT----TTT-------------------------------------------------------------AA--------------CTG-CTGAAAAT-ACC---------ATTTACC----------AT-------GTATATAAG-----AAT-------------GGAACCCG-------------------------------CATGTGTATGC-----------------------------------------GGTGG----CT----GTGTG------TGTGTGTT-----------------CGTGATGCTCATGCGG-----------CTATTT-------GAAAAAG----TTCG-------C--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTCGTTTTACA-----------ACGGTGAATCGT---GTCGGTGT---CASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTTACA-----------ACGGTGAATCGT---.............2113.00312000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGAATCGT---GTCGGTGT---CA2112.00200000000011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------ACGGTGAATCGT---GTCGGTGT---..2112.00200000000001001000
................................ACAGGTCTAGAGCAGCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000000000002000
.................................CAGGTCTAGAGCAGCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200000200000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-TGTCTC-------------TATCGCTCGTT............................................2012.00200000000000002000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC-------------TATCGCTCGTTTTACA-----------AC..........................2112.00210000010000000000
.........................AAATGGCACAGGTCTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000000000
............................TGGCACAGGTCTAGAGCAGCAAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................GTT-----------------CGTGATGCTCATGCGG-----------...................................................................................................................................................................1911.00100001000000000000
................TATTAACCAAAATGGCACAGGTCTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...............................................................TT----TTT-------------------------------------------------------------AA--------------CTG-CTGAAAAT-ACC---------....................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.................................CAGGTCTAGAGCAGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................TGTGTGTT-----------------CGTGATGCTCA...................................................................................................................................................................................1911.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................TCATGCGG-----------CTATTT-------GAAAAAG----...........................................................................................................................................2111.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................G----CT----GTGTG------TGTGTGTT-----------------CGTGA.........................................................................................................................................................................................2111.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTTACA-----------ACGGTGAATCGG---.............2111.00110000000000000000
....................................................AAGTAG---CGTT----TTT-------------------------------------------------------------AA--------------CTG-CTG......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...............................CACAGGTCTAGAGCAGCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCTCGTTTTACA-----------ACGGT.......................2111.00100000010000000000
............................TGGCACAGGTCTAGAGCAGCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-TGTCTC-------------TATCGCTCGTTTT..........................................2111.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACA-----------ACGGTGAATCGT---GTCGGAA......2311.00100000000000001000
...............................CACAGGTCTAGAGCAGCAAGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
.................................CAGGTCTAGAGCAGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.....ATGAGTAATGCTATTAACCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
....................................................................................................................................................................................................................................................................................................................................................G------TGTGTGTT-----------------CGTGATGCTCAT..................................................................................................................................................................................2111.00100001000000000000
..........................AATGGCACAGGTCTAGAGCAGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
................................................................................................................................................................................................T-------GTATATAAG-----AAT-------------GGAACCCG-------------------------------.....................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..............................GCACAGGTCTAGAGCAGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
......................................................................................................................................................................................................................................................................................GC-----------------------------------------GGTGG----CT----GTGTG------TGTGTGT................................................................................................................................................................................................................2111.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................GTGTT-----------------CGTGATGCTCATG.................................................................................................................................................................................1811.00110000000000000000
..................................AGGTCTAGAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000010000000000
...........................ATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-TGTCTC-------------TATCGCT................................................1630.33100000001000000000
.....................................................................................................................................................................................................................................................................................................................................G----CT----GTGTG------TGTGTGTT-----------------..............................................................................................................................................................................................16200.05100000000001000000
droSec2
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTT----TTT-------------------------------------------------------------AA--------------CTG-CTGAAAAT-ACCATGTA--CCATTTACC----------AT-------GTATATAAG-----AAT-------------GGAACACG-------------------------------CATGTGTATGC-----------------------------------------GGTGG----CT----GTGTG------TGTGTGTT-----------------CGTGATGCTCATGCGG-----------CTTTT--------GAAAAAG----TTCG-------C--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTCGTTTTACA-----------ACGGTGAATCGT---GTCGGTGT---CASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................GGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020020
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------ACGGTGAATCGT---GTCGGTGT---..2111.0010100
...............................................................................................................................................................................................................................................................................TGTGTATGC-----------------------------------------GGTGG----CT----GTGTG------.......................................................................................................................................................................................................................2111.0010100
........................................................................................................................................................................................................GTATATAAG-----AAT-------------GGAACACG-------------------------------C....................................................................................................................................................................................................................................................................................................2111.0010001
................TATTAACCAAAATGGCACAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-TGTCTC-------------TATCGCTCGTT............................................2011.0011000
............................TGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..............................GCACAGGTCTAGAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TGTCTC-------------TATCGCTCGTTTT..........................................2011.0010001
..........................AATGGCACAGGTCTAGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTCATGCGG-----------CTTTT--------G.....................................................................................................................................................2111.0010001
........................AAAATGGCACAGGTCTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...........................................................................................................................................................................................................................................................................................................................................................TGTGTGTT-----------------CGTGATGCTCATG.................................................................................................................................................................................2111.0010001
..........................AATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
....................................................................................................................................................................................................................................................................................................................................................G------TGTGTGTT-----------------CGTGATGCTCA...................................................................................................................................................................................2011.0010100
...........................................................................................................................................................................................................................................................................................................................................................TGTGTGTT-----------------CGTGATGCTCATGT................................................................................................................................................................................2211.0010001
............................................................................................................................................................................................................ATAAG-----AAT-------------GGAACACG-------------------------------CATGT................................................................................................................................................................................................................................................................................................2111.0010100
...................................................................................................................................................................................................................................................................................................................................TGG----CT----GTGTG------TGTGTGTT-----------------CGT...........................................................................................................................................................................................2111.0010100
..............................................................................................................................................................................ATTTACC----------AT-------GTATATAAG-----AAT-------------............................................................................................................................................................................................................................................................................................................................................2111.0011000
.......................................................................................................................................................................................................................AT-------------GGAACACG-------------------------------CATGTGTATGC-----------------------------------------.................................................................................................................................................................................................................................................2111.0010001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCGT---GTCGGTGT---CA1911.0010100
...................TAACCAAAATGGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100
.......................................TAGAGCAGCAAGTAAGTAG---CG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
...............................................................................................................................................................................TTTACC----------AT-------GTATATAAG-----AAT-------------G...........................................................................................................................................................................................................................................................................................................................................2111.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACACACTAA-TGTCTC-------------TATCGCTCGT.............................................2811.0010010
dm3
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTT----TTT-------------------------------------------------------------AA--------------CTG-CTGAAAAT-ACC---------ATTTACC----------AT-------CTATATAAG-----AAT-------------GGAACACG-------------------------------CATGTGTATGC-----------------------------------------GGTGG----CT----GTGTG------TGTGTGTT-----------------CGTGATGCTCATGCGG-----------CTATTT-------GAAAAAG----TTCG-------C--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTCGTTTTACA-----------ACGGTGAATTGT---GTCGGTGT---CASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................AATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000200000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000
....................AACCAAAATGGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28113.001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................AAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000001001000000020000000000000000000001000000
..............................GCACAGGTCTAGAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000000
.............................GGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------ACGGTGAATTGT---GTCGGTGT---..2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000
......................................................................................................................................................................................................................AAT-------------GGAACACG-------------------------------CATGTGTATG...........................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111000000000000000000000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGAATTGT---GTCGGTGT---CA2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000
...........................ATGGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000010000000000000000000000000000
...................TAACCAAAATGGCACAGGTCTAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................GCACAGGTCTAGAGCAGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
........................AAAATGGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000
..........................AATGGCACAGGTCTAGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010
.........................AAATGGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................GAACACG-------------------------------CATGTGTATGC-----------------------------------------GGT..............................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TGTG------TGTGTGTT-----------------CGTGATGCT.....................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................TT-------------------------------------------------------------AA--------------CTG-CTGAAAAT-ACC---------ATT.................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ACAGGTCTAGAGCAGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................ACAGGTCTAGAGCAGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000000
.....................................................................................................................................................................................................................................................................................TGC-----------------------------------------GGTGG----CT----GTGTG------TGTGTG.................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010000
....................AACCAAAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................TAACCAAAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
.........................AAATGGCACAGGTCTAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................AGTAAGTAG---CGTT----TTT-------------------------------------------------------------AA--------------CTG-.........................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000010000
...............CTATTAACCAAAATGGCACAGGTCTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTGAATTGT---GTCGGTGT---C.2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000020000
......................CCAAAATGGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
............................TGGCACAGGTCTAGAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000
..................TTAACCAAAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
........................AAAATGGCACAGGTCTAGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGAATTGT---GTCGGTGT---C.2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TAACCAAAATGGCACAGGTCTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
....TATGAGTAATGCTATTAACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TAACCAAAATGGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TATTAACCAAAATGGCACAGGTCTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AAAATGGCACAGGTCTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AAAATGGCACAGGTCTAGAGCAGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................TGGCACAGGTCTAGAGCAGCAAGTTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
............................TGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
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................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTAA-TGTCTC-------------TATCGCTC...............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................GCACAGGTCTAGAGCAGCAAGTTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CC---------ATTTACC----------AT-------CTATATAAG-----A...........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AGCAGCAAGTAAGTAG---CGTT----T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CTCATGCGG-----------CTATTT-------GAAAAAG----...........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
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......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACA-----------ACGGTGAATTGT---G............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATTAACCAAAATGGCACAGGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TGTGTATGC-----------------------------------------GGTGG----CT----GT................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATTGT---GTCGGTGT---C.1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
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.............................GGCACAGGTCTAGAGCAGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................ACAGGTCTAGAGCAGCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGGCACAGGTCTAGAGCAGCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................TAACCAAAATGGCACAGGTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AATGCTATTAACCAAAATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................ATGCTCATGCGG-----------CTATTT-------GAAA..................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GGTGG----CT----GTGTG------TGTGTGT................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TGG----CT----GTGTG------TGTGTGTT-----------------CGT...........................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTT----TTT-------------------------------------------------------------AA--------------ATG-GTGAAAAT-ACC---------ATTTACC----------AT-------GTACATAAG-----AAT-------------GGTATATGCATATGTG-------------------------TGTGTATG--------TAC-------------------------------GGTGA----GTGCGT--GCG------TGTGTGTG-----------------CATTATGCTCATGCGG-----------CT------------AAAATG----TTCG-------C--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTCTTTTTACA-----------ACGGTGAATCGT---GTCGGTGT---CASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................AACCAAAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000110
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTAA-TGTCTC-------------TATCGCTCT..............................................2112.0021000100
.........................................................................................................................................................................................................................................................................................................................................................................................TGCTCATGCGG-----------CT------------AAAATG----TTCG-------................................................................................................................................2311.0010000010
....................................GTCTAGAGCAGCAAGTAAGTAG---CGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
................................................................................................................................................................................................................................................TATGTG-------------------------TGTGTATG--------TAC-------------------------------GG...............................................................................................................................................................................................................................................1911.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TGTCTC-------------TATCGCTCTTTT...........................................1911.0010000010
.....................................................................................................................................................................................................................................................G-------------------------TGTGTATG--------TAC-------------------------------GGTGA----GTGC....................................................................................................................................................................................................................................2111.0010000100
..........................................................................................................................................................................................................................................................................................................................................GTGCGT--GCG------TGTGTGTG-----------------CATTATGCTC....................................................................................................................................................................................2711.0010100000
...........................ATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
..................................................GTAAGTAG---CGTT----TTT-------------------------------------------------------------AA--------------ATG-G........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..........................AATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------TATCGCTCTTTTTACA-----------ACGG........................2111.0010000010
...................................................................................................................................................................................................................................................................................................................................TGA----GTGCGT--GCG------TGTGTGTT-----------------..............................................................................................................................................................................................20140.0710000010
droYak3
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAGTAGCGTT----TTT-------------------------------------------------------------TA--------------CTG-GTGAAATT-ACC---------ATTTACC----------AT-------GTATATAAG-----AAT-------------AGTATATGCATATGTGTG---------------------TATGTATATAC-----------------------------------------GATGA----GTGCCT----G------TGTGTGTG-----------------CGTGATGCTCATGCGG-----------CTATTT-------GAAAAAG----TTCG-------C--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTCTTTTTACA-----------ACGGTGAATCGT---GTCGGTGT---CASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................AACCAAAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000020000
...................TAACCAAAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000020000
..........................AATGGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
..........................AATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.................................................................................................................................................................................................................................................................................................................................GATGA----GTGCCT----G------TGTGTGTG-----------------C.............................................................................................................................................................................................2111.00100010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACA-----------ACGGTGAATCGT---GTCGGTGT---..2711.00100000010000
..............GCTATTAACCAAAATGGCACAGGTCTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------TATCGCTCTTTTTACA-----------ACGG........................2111.00110000000000
.......................................................................................................................................................................................................................................................G---------------------TATGTATATAC-----------------------------------------GATGA----GTGCC...................................................................................................................................................................................................................................2211.00100100000000
.............................GGCACAGGTCTAGAGCAGCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
......................CCAAAATGGCACAGGTCTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.............................GGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..........................AATGGCACAGGTCTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
..............................GCACAGGTCTAGAGCAGCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
......................................................GTAGTAGCGTT----TTT-------------------------------------------------------------TA--------------CTG-GT.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
....................................................................................................................................................................................................................................................................................ATAC-----------------------------------------GATGA----GTGCCT----G------TGTGT..................................................................................................................................................................................................................2111.00100000010000
......................................................................................................................................................................................................................................................................................AC-----------------------------------------GATGA----GTGCCT----G------TGTGTGTG-----------------CGT...........................................................................................................................................................................................2511.00100000010000
.........................AAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.................ATTAACCAAAATGGCACAGGTCTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
droEug1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTT----TTT-------------------------------------------------------------AA--------------CTGGGT-AAAAA-ACC-----------TTACCTATCTAT-------------TCTATAAG-----AAA-------------AGTACATC-------------------------------CA--TATATACA---------GTGA------------------------GTGGATGAGTGAGTGCGTG--CG----TGTGTGTGTA-----------------AGTGATGCTCATGCGG-----------CTATTCGG-----GAAAAAG----TTCG-------G--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTC-TTTTACA-----------ACGGTGAATCGT---GTCGGTGA---CGSizeHit CountTotal NormTotal
No Reads
droBia1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTT----TTT-------------------------------------------------------------AA--------------CTGGGCGAAAAT-GCC----------------CGTC------TT-------CTATATAGG-----AAA-------------AGTAC----GTATGTGTGCA---------------CC--TATGTACATGC----ACACACGCGG------------------------GCGAGTGAGTAATTGCGT--GCG------TGTGTGTG-----------------CGTGATGCTCATGCGG-----------CTGTTGGGGGAAAAAAAAAG----TTCG-------G--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTC-TTTTACA-----------ACGGTGAATCGC---GTCCGTGG---CTSizeHit CountTotal NormTotal
No Reads
droTak1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTT----TTT-------------------------------------------------------------GA--------------CTGGGTGAAAAT-ACC---------GTCTAC---------------------TACATAAGA----AAA-------------AGTAT----ATATGTACG---------------------CATGTATATGC-----------------------------------------AGTGAGTAAGTGCGT--GCG------TGTGTGTG-----------------AGTGATGCTCATGCGG-----------CTATTGGG-----GAAAAAG----TTCG-------G--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTC-TTTTACA-----------ACGGTGAATCGT---GTCGGTGT---CTSizeHit CountTotal NormTotal
No Reads
droEle1
ATAATATGAGTAATGCTATCAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTT----ATA-------------------------------------------------------------AA--------------GTG-GTGAAAAT-ACA---TACTACATATA-C----------AT-------ATATATAAG-----AAA-------------AGTAC--------------A-----------------------TATATAC-----------------------------------------AATGA----GTGAGT--GCG------TGTGTGTG-----------------AGTGATGCTCATGCGG-----------CTATTG-------GAAAAAG----TTCG-------G--CT------AGAA-AT------------TTATTGATTTCATAACACACCAA-TGTCTC-------------TATTGCTC-ATTTACA-----------AC------------------TGC---CTSizeHit CountTotal NormTotal
No Reads
droRho1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTT----ATC-------------------------------------------------------------A----------------TA-GTGAAAAT-AAA---TA------CTA-C----------AT-------ATATATAGG-----AAA-------------AATAC--------------A-----------------------TATATAC-----------------------------------------AGTGA----ATGAGT--GCG------TGTGTGTG-----------------AGTGATGCTCATGCGG-----------CTATTG-------GAAAAAG----TTCG-------G--CT------AGAA-AT------------TTATTGATTTCATAACACACTAA-TGTCTC-------------TATCGCTC-TTTTACA-----------ACGGTGAATCGG---GTTCGTGT---GGSizeHit CountTotal NormTotal
No Reads
droFic1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTT----AAT-------------------------------------------------------------AA--------------CTG-GTGAAAAT-A-------------TTAC-----------AT-------ATAGA-AAGA----AAA-------------ACTAC-----------------------------------TTGTATATAC-----------------------------------------AGTGA----GTGCAT--GTG------TGTGTGTG-----------------AGTGATGCTCATGCGG-----------CTATTG-------GAAAAAG----TTCG-------G--CT------AGAA-AT-----------TTTATTGATTTCATAACACACTAA-TGTCTC------------GTATCGCTT-TTTTACA-----------ACGGTGAATCGT---GTCGGTGT--GGASizeHit CountTotal NormTotal
No Reads
droKik1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGTG----A---------------------------------------------------------------GA--------------GGG-GTGGAAAT-A-----TA---------C--------TACACA-T----GAAA----------AAA--AGTAATGTTCAACTA-----------------------------------TATGTATATC--------------------------------------------TGA----GTGAGTGTGTG------TGT----G-----------------TGTG------ATGCGG-----------CTAGTG-------GACAATG----TTCG-------G--CT------AAAA-AT------------TTATTGATTTCATAACA--CTAA-TGTCTC------------GTATCGCTC-TTTTACA-----------ACAGTGAATCAA---GTACATGATAGGASizeHit CountTotal NormTotal
No Reads
droAna3
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---TAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTGTACA-----------------------TATATATATTGC--CATG------------------------------TGTGT----GTGTGT--GTGTGTGTTTGAGTGTG-----------------AGTGA----CATGCGG-----------CTGTTG-------GAGAGTG----TTCG-------G--CT------AAAA-AT------------TTATTGATTTCATAACACACAAA-TGT-------------------GGTTC-TTTTACA-----------ACGGTGTATCGT---GTAGGTGAACCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................CATGCGG-----------CTGTTG-------GAGAGTG----T..........................................................................................................................................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................GG-----------CTGTTG-------GAGAGTG----TTCG-------G--C............................................................................................................................2111.001000001
.....................ACCAAAATGGCACAGGTCTAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
................TATTAACCAAAATGGCACAGGTCTAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
................................................................................................................................................................................................................................................................................................................................................................................................GCGG-----------CTGTTG-------GAGAGTG----TTCG-------................................................................................................................................2111.001000001
......................................................................................................................................................................................................................................................................................................................................................GTGTTTGAGTGTG-----------------AGTGA----CAT..................................................................................................................................................................................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................GTGTTTGAGTGTG-----------------AGTGA----CA...................................................................................................................................................................................2011.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................GA----CATGCGG-----------CTGTTG-------GAGA..................................................................................................................................................1911.001000010
...............................................................................................................................................................................................................................................................................................CATG------------------------------TGTGT----GTGTGT--GTG.............................................................................................................................................................................................................................18200.051000001
droBip1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---TAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTGTACA---------------TA--TATATATATTG----C------------------------------------CATGT----GT------GTG------TGTGTGTG-----------------CGTGAGTGACATGCGG-----------CTGTTG-------GAGAGTG----TTCG-------G--CT------AAAA-AT------------TTATTGATTTCATAACACACAAA-TGT-------------------GGTTC-TTTTACA-----------ACGGTGAATCGT---GTAGGTGA----ASizeHit CountTotal NormTotal
No Reads
dp5
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGCA----AAT--------------------------------------GAAATGTCGTCTGTTGGTTAGTCGAGTGGTGGGGGAATCCTGGGCG-AAAT-A------------------TATATATTATA-------C---GG----A----AAA--AGT--------ATTATATGCATATGTA--GA---------------CA--TATGTATATCC-----------------------------------------GTT-------CGACTGTGTG------TGT----GTGCGA--CAGTTTGTATGACGAGGCTCATGCGG-----------TTATTG-------GACAATG----TTCG------GG--CT------AAAA-AT------------TTATTGATTTCATAACACACAAA-TGTCTCTGGCTGTCAAGCGTATCTCTC-ATTTACA-----------ACGGTGAACTGT---GTACGTG----CASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................TATTG-------GACAATG----TTCG------GG--C............................................................................................................................1912.0020000000020
..........................................................................................................................................................................................................................................TATGCATATGTA--GA---------------CA--TATGTA...............................................................................................................................................................................................................................................................................................2211.0010100000000
...................TAACCAAAATGGCACAGGTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................TTGGTTAGTCGAGTGGTGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
............................TGGCACAGGTCTAGAGCAGCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
.................ATTAACCAAAATGGCACAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................TAACCAAAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
......................................................................................................................................................................................................................................................................................CC-----------------------------------------GTT-------CGACTGTGTG------TGT----GTG.............................................................................................................................................................................................................2111.0010100000000
.......................................................................T--------------------------------------GAAATGTCGTCTGTTGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................ATTATATGCATATGTA--GA---------------C........................................................................................................................................................................................................................................................................................................1911.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................GTTTGTATGACGAGGCTCATG.................................................................................................................................................................................2111.0010000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTATTG-------GACAATG----TTCG------GG--C............................................................................................................................2011.0010000000010
.................ATTAACCAAAATGGCACAGGTCTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..........................AATGGCACAGGTCTAGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
....................AACCAAAATGGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
................TATTAACCAAAATGGCACAGGTCTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.........................AAATGGCACAGGTCTAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
.......................................................................T--------------------------------------GAAATGTCGTCTGTTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
.....................ACCAAAATGGCACAGGTCTAGAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000001000
...........................................................................................................................TTGGTTAGTCGAGTGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGCA----AAT--------------------------------------GAAATGTCGTCTGTTGGTTAGTCGAGTGGTGGGGGAATCCTGGGCG-AAAT-A------------------TATATATTATA-------C---GG----A----AAA--AGT--------ATTATATGCATATGTA--GA-------------CATATGTATGTATATCC-----------------------------------------GTT-------CGACTGTGTG------TGT----GTGCGA--CAGTTTGTATGACGAGGCTCATGCGG-----------TTATTG-------GACAATG----TTCG------GG--CT------AAAA-AT------------TTATTGATTTCATAACACACAAA-TGTCTCTGGCTGTCAAGCGTATCTCTC-ATTTACA-----------ACGGTGAACTGT---GTACGTG----CASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAACACACAAA-TGTCTCTG..................................................................2113.003300000
...............................................................................................................................TTAGTCGAGTGGTGGGGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000002
....................AACCAAAATGGCACAGGTCTAGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
....................AACCAAAATGGCACAGGTCTAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
......................................................................................................................................................................................................................................................................................CC-----------------------------------------GTT-------CGACTGTGTG------TGT----GT..............................................................................................................................................................................................................2011.001000010
....................................................................................................................................................................................................................................................................................................................................................................................GACGAGGCTCATGCGG-----------TTATTG-------GAC...................................................................................................................................................2511.001100000
..............................................................................................................................GTTAGTCGAGTGGTGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
....................AACCAAAATGGCACAGGTCTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
................................................................................................................................................................................................................................................................................GTATATCC-----------------------------------------GTT-------CGACTGTGTG------TGT----GC..............................................................................................................................................................................................................2611.001100000
....................................................................................................................................CGAGTGGTGGGGGAATCCTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
................................................................A----AAT--------------------------------------GAAATGTCGTCTGTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
........................................................................................................................................TGGTGGGGGAATCCTGGG........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
.........................................................................................................................................................................................................................................................................TATGTATGTATATCC-----------------------------------------GTT-------CGACT..................................................................................................................................................................................................................................2311.001100000
.........................AAATGGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.........................AAATGGCACAGGTCTAGAGCAGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTC-ATTTACA-----------ACGGTGA.....................2111.001010000
droWil2
ATAATATGAGTAATGCTAT---CCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTGCGATT-----------------------------------------------------------------------------------------AT-A----------------C-----------AT-------ATA---------------------------------C------------A-------------------TATATGTATGT------------------------------------------GTGA----CCATGTATATG------TGT----G-----------------TA---------------------------------------------------TG-------G--CT------AGAA-AT------------TTATTGATTTCATAACACACT-----------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................AT---CCAAAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.00300030
.............................GGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200020
.................AT---CCAAAATGGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200200
..........................AATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200020
.......................CAAAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200110
.............................GGCACAGGTCTAGAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.........................AAATGGCACAGGTCTAGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
....................................GTCTAGAGCAGCAAGTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
..........................................AGCAGCAAGTAAGTAG---AGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
........................AAAATGGCACAGGTCTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
................TAT---CCAAAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
........................AAAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.....................................................................................................................................................................................................................................................................................TGT------------------------------------------GTGA----CCATGTATATG------TGT----................................................................................................................................................................................................................2111.00100001
................................ACAGGTCTAGAGCAGCAAGTAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
......................CCAAAATGGCACAGGTCTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
....................................................................................................................................................................................................................................................................................................................................GA----CCATGTATATG------TGT----G-----------------T.............................................................................................................................................................................................1811.00100010
..............................GCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------TG-------G--CT------AGAA-AT------------TTATTGATT.........................................................................................2111.00100010
droVir3
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---GGAA----CTT------GTGTATGTGTGCGTGTGTTTGTGTGTGAATGTAAAATGTGGTGCG---------------GTG-------------CA-AAAG-A-----GGG----------TATAT-------AATGGAA---GA----A----AAAAAA----------A---C----GTAATGGTACATTT-------GTGCA----TATGTGTG--------------TTAGCTGTGTCAGCTAAAAGTGGTTCTG----TGT----GTGAGTG--GC------CAT----GTGTGAAAGAGT-----CGGCGATGCTCATGCGGTCCGCACACGATTATTG-------AACAGTG----TTCAGT-GAGGG--CT------CTAA-CTTTTTTTTTTTTTTTATTGATTTCATAACATATAAAACGTCT--GACCGTGGAACGCGTTGCGC-TTTTACATTTTGCAACGAACTGTAACTCGT---GTACGTAT---AASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................ATGGCACAGGTCTAGAGCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................GGCACAGGTCTAGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
...................TAACCAAAATGGCACAGGTCTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
..............................GCACAGGTCTAGAGCAGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000010000000000000000000000000000000000000
.............................GGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTG----TTCAGT-GAGGG--CT------.....................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
..................TTAACCAAAATGGCACAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................GTCAGCTAAAAGTGGTTCTG----TC.............................................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................G--GC------CAT----GTGTGAAAGAGT-----CGG............................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................ACCAAAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................T----GTGAGTG--GC------CAT----GTGTGAAA........................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
...................TAACCAAAATGGCACAGGTCTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
.................ATTAACCAAAATGGCACAGGTCTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................ATGTAAAATGTGGTGCG---------------GTG-------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
.................................CAGGTCTAGAGCAGCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTG----TTCAGT-GAGGG--C............................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
............................TGGCACAGGTCTAGAGCAGCAAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001000000000000000000000000000000000000000000000000000000000
.......................CAAAATGGCACAGGTCTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCT--GACCGTGGAACGCGTT...................................................2011.001000000000100000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CGGCGATGCTCATGCGGTCCGCACA......................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
...........................ATGGCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
..............................GCACAGGTCTAGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000010000000000000000000000000000000
....................AACCAAAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................G--GC------CAT----GTGTGAAAGAGT-----CGGC...........................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
...........................ATGGCACAGGTCTAGAGCAGCAAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000010000000000000000000000000000000000000000000
....................AACCAAAATGGCACAGGTCTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................TGCGTGTGTTTGTGTGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.102000000000010000000000001000000000000000000000000000000000000000
................................................................................GTATGTGTGCGTGTGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18120.081000000000100000000000000000000000000000000000000000000000000000
droMoj3
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---TGTA----CTT------GTATATGTG------------------AATGTAAAATGTGGTTTG---------------GTG-------------CA-AAAT-A-----GGG----------TACAT-------AATG-------G----AAAAAAAA-------------TGTAC--------------ATTTACCTTTGGTGTATT--TGTGTGTGTGT----ATGTGTGTTAGCTGTGTCAGCTAAAAGTGTGTCTT----TGT----GTGAGTG--TG------CAT----GTGTGAAAGAGT-----CGGCGATGCTCATGCGGTCTGCACACGATTATTG-------AACAGTG----TTCAGTCGAG--TTCTA----AAAAAATT--------TTTTTTATTGATTTCATAACATACAAAACGTTT--GACCGTGGAATTTGGTGTGC-TTTTACATATTGCA----ACGA------------------G---CASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............GCTATTAACCAAAATGGCACAGGTCTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
............................TGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.............................GGCACAGGTCTAGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.................ATTAACCAAAATGGCACAGGTCTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
................TATTAACCAAAATGGCACAGGTCTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
........................AAAATGGCACAGGTCTAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
...........................ATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droGri2
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---GGCG----GATACATCCGTGGATGTGAATGTGGATGTCGTTGTGAA---------------------TGTTCAAGTGCTA-------------CA-ATAGAA-----GGG----------TACAT-------AATGGATAAAAAGAAG-----AAAAAAAC--------AGTA-ATGTAC--------ATGTAGCGTTGCTACACG--TGTGTGTGTG--------------------------------------------TGA----GTGCGTGTGTG------TGT----GTGTGAAAGTGT-----CTGTGATGCTCATGTGG-----------TTATATTGTG---AACACCGATTCTTCACTCGAGGGTTCCACAAAAAAAA-AT------------TTATTGATTTCATAACACA-AAA-TGTCTG--ACCGTGGAGCGCATTGCGC-TTTTACATTTTGCAGCGAACGGTGACTCGTCGTGTACATAT-ACGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................GTTCAAGTGCTA-------------CA-ATAGAA-----GG........................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
.........................AAATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
.......................CAAAATGGCACAGGTCTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
..............................GCACAGGTCTAGAGCAGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
..........................AATGGCACAGGTCTAGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110

Generated: 05/18/2015 at 08:41 AM