ID:

dsi_18233

 Coordinate:

3l:9572909-9573058 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

TCAATTACAGAACGAACAACGACCGACATTTAACGATTAACATTAAGACCAACTGAAGTAGGGGAAAGTGCTTAGGATTCCTTTTTTCCGAACCGCCAGCAAAGAAGAACAACAAAAGAAACCCGATAAGCGGAACTAAGTCGCGTGGAAGATTTTAAAAAATATTTTTTATCAACAATATTTTTGAAAAACTTCCAAAGACCCAAAGACATTCGAAGCAGTAGCCGACGACAGAGAAGCTTCGAGGCAA
**********************************************************************************..........((((.................................))))....***************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M053
female body
 O001
Testis
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
............................................................................................................................................................................................AAACTTCCAAAGACCCAAAGAC........................................ 22 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0
...................................................................................................................AAGAAACCCGATAAGCGGAACT................................................................................................................. 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTGAAAAACTTCCAAAGACC............................................... 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
........................GACATTTAACGATTAACATTAAGAC......................................................................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...................................................................................................................AAGAACCCCGATAAGGGGA.................................................................................................................... 19 2 2 2.00 4 0 4 0 0 0 0 0 0 0 0
..................................................................................................................GAAGAACCCCGATAAGGGGA.................................................................................................................... 20 3 7 1.14 8 0 8 0 0 0 0 0 0 0 0
.......................................ACATTAAGACCAACTGAAGT............................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................TTTTTCCGAACCGCCAGCAAAGAA................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AACTAAGTCGCGTGGAAGATT................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GACAGAGAAGCTTCGAGGC.. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TTTGAAAAACTTCCAAAGACCC.............................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................ACTAAGTCGCGTGGAAGATT................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................ACTAAGTCGCGTGGAAGAT................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................AGGGGAAAGTGCTTAGGATTCCT........................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................TAAGTCGCGTGGAAGATT................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTAGCCGACGACAGAGAA............ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................TAAGACCAACTGAAGTAGGG........................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................TATTTTTGAAAAACTTCCAAAG.................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................CCAACTGAAGTAGGGGAAAGT..................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................GAAGAACAACAAAAGAAACC............................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................ATTCCTTTTTTCCGAACCGCCAGC...................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................AGAACCCCGATAAGGGGA.................................................................................................................... 18 2 3 0.67 2 0 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CCGACGACAGAGAGG........... 15 1 6 0.33 2 0 0 0 0 0 0 2 0 0 0
..................................................................................................................GAAGAATCCCGATAAGGGGA.................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TAAGAACCCCGATAAGGGGA.................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TAGTAGCTGACGACAGA............... 17 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................AAGAACCCCGATAAGGG...................................................................................................................... 17 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................GAACCCCGATAAGGGGA.................................................................................................................... 17 2 15 0.13 2 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................CGCGTTGATGATTTGAAAAA......................................................................................... 20 3 16 0.13 2 0 0 0 0 0 0 0 0 2 0
..................................................AACTGAAGTGGGGGA......................................................................................................................................................................................... 15 1 15 0.07 1 0 0 0 0 0 0 0 0 0 1
...................................................................................................................AAGAACCCCGATAGGGGGA.................................................................................................................... 19 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGTTAATGTCTTGCTTGTTGCTGGCTGTAAATTGCTAATTGTAATTCTGGTTGACTTCATCCCCTTTCACGAATCCTAAGGAAAAAAGGCTTGGCGGTCGTTTCTTCTTGTTGTTTTCTTTGGGCTATTCGCCTTGATTCAGCGCACCTTCTAAAATTTTTTATAAAAAATAGTTGTTATAAAAACTTTTTGAAGGTTTCTGGGTTTCTGTAAGCTTCGTCATCGGCTGCTGTCTCTTCGAAGCTCCGTT
*****************************************************************************************************************..........((((.................................))))....********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M023
head
 SRR618934
dsim w501 ovaries
..............................................................................AGAAAGAAAGGCTTGGCGGACG...................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................................................AAAAAATAGTTGTTAT...................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................AAAAATAGTTGTTAT...................................................................... 15 0 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................................................................................AAAAAAAATAGTTGTTAT...................................................................... 18 1 10 0.40 4 1 0 0 3 0 0 0
...........................................................................................................................................................................................TTTTGACGGTTTCTGGCTT............................................ 19 2 7 0.29 2 0 0 0 0 2 0 0
.............................................................................TAGAAAGAAAGGCTTGGCGG......................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0
....................................................................................AAAGGCTTGGCGGAC....................................................................................................................................................... 15 1 18 0.22 4 1 3 0 0 0 0 0
.................................................................................AAAAAAGGCTTGTCGGT........................................................................................................................................................ 17 1 5 0.20 1 1 0 0 0 0 0 0
.....................................................................................AAGGCTTGGCGGACG...................................................................................................................................................... 15 1 10 0.20 2 2 0 0 0 0 0 0
..................................................................................AGAAAGGCTTGGCGGACG...................................................................................................................................................... 18 2 6 0.17 1 0 0 0 1 0 0 0
..................................................................................AAAAAGGCTTGTCGGT........................................................................................................................................................ 16 1 7 0.14 1 0 0 0 1 0 0 0
...................................................................................................................................................................AAAAAAATAGTTGTTAT...................................................................... 17 1 17 0.12 2 1 0 0 1 0 0 0
...........................................................................CTAAGGGAAACAGGCATGG............................................................................................................................................................ 19 3 9 0.11 1 0 0 0 0 0 1 0
..........................................................................CCTAAGGAGAACAGGC................................................................................................................................................................ 16 2 20 0.10 2 1 0 0 1 0 0 0
................................................................................AAAAAAAGGTGTGGCGGTCGT..................................................................................................................................................... 21 3 14 0.07 1 0 0 1 0 0 0 0
...............................................TGGTTGACTTGATGCCCTG........................................................................................................................................................................................ 19 3 19 0.05 1 0 0 0 1 0 0 0
.................CTGCTGGCTGCAAATT......................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:9572859-9573108 + dsi_18233 T-CAATTACAGAACGA-ACAACGACCGA--CATTTAACGA--TTAACATTAAGACCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCCTTTTTTCCGA------------------ACCGCCAGCAAA---GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------G------------------------------AAA---------CCCGATAAGCGGAA-C----------TAA--------GTCGCGT-----------------------------------------------------------------GGAAGATTTT-AAAAAATA--TTTTTTATCAACAATATTT----TTGAAA-AA-CTTCCAAAGACCC---AAAGACATTCG---A--AGCAGT-------AG---CCG-----------------------A---------------------------------------------------------CGA----CAG-----------------------AG-----------AAGCTTCGAGGCAA
droSec2 scaffold_0:2045976-2046237 + T-CAATTACAGAACGA-ACAACGACCGA--CATTTAACGA--TTAACATTAAGACCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCCTTTTTTCCGAATTCGC----CCAC--ATACCGCCAGCAAA---GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------G------------------------------AAA---------CCCGATAAGCGGAA-C----------TAA--------GTCGCGT-----------------------------------------------------------------CGAAGATTTT-AAAAAATA--TTTTTTATCAACAATATTT----TTGAAA-AA-CTTCCAAAGACCC---ATAGACATTTC---A--AGCAGT-------AG---CCG-----------------------A---------------------------------------------------------CGA----CAG-----------------------AG-----------AAGCTTCAAGGCAA
dm3 chr3L:9813164-9813429 + T-CAATTACAGAACGA-ACAACGACCGA--CATTTAACGA--TTAACATTAAGACCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCCTTTTTTCCGAATTCGC----CCAC--ATACCGCCAGCAAA---GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------C------------------------------AAAA--------ACCGATAAGCGGAA-C----------TAA--------GTCGCGT-----------------------------------------------------------------GGAAGATTTT-AAAAAATATTCTTTTTATCAACAATATTT---TTTGAAA-AA-CTTCCAAAGACCC---AAAGACATTCG---A--AGCAGT-------AG---CCG-----------------------A---------------------------------------------------------CAA----CAG-----------------------AG-----------AAGCTTCGAGGCAA
droEre2 scaffold_4784:9801816-9802058 + T-TAATTACAGAACGA-ACAACGACCGA--CATCTAACGA--TTAACATTAAGACCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCTTTTTA-TCGAA-TCGC----CCAC--ATACCGCCAGCAGA---GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------G------------------------------AAAA--------CCCGATAAGCGGAA-C----------TAA--------GTCGAGT-----------------------------------------------------------------GGAAGATTTT-AAAAAATA--TTTTTTATCAACAATATTT----TCGAAA-AA-CTTCCAAAGAC-----------ATTCG---A--AGCAGT-------------------------------------------------------------------------------------------------------TAG-----------------------AA------------AGCTACGAGGCAA
droYak3 3L:9787240-9787502 + T-CAATTACAGAACGA-ACAACGACCGA--CATTTAACGA--TTAACATTAAGACCAA-----------------CTGAAGTAGGGGC--------AAGTGCTTAG-G----------------------------------------------------ATTCTATTTT-TCGAA-TCGC----CCAT--ATACCGCCAGTAAA---GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------G------------------------------AAAA--------CCCGATAAGCAAAA-C----------TAA--------GTCGAGC-----------------------------------------------------------------GGAAGATTTT-AAAAAATA--TTTTTTATCAACAATATTT----TCGAAA-AA-CTTCCAAAGAC-----------ATTCG---A--AGCAGT-------AG---CAGTAGAAGCAATAGC-----------------------------------------------------------------------AGT--TG-----------------------AG------------AGCTGCGAGGCAA
droEug1 scf7180000409711:1669566-1669808 + T-CATTTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGACCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCTTTTTT-GCAAA-ACACCAACCCACATATACCGCCAGCA--------------------------AG---A---A---CAA------GC---AAAA------------------------------------------G------------------------------AAC---------ACCGATAAGCGGAA-C----------TAA--------GACGAGT-----------------------------------------------------------------TGGAAATTTT-CAAAAATA--TTTTTTATCAACAATATTTCTTTTTGAAAAAA-CTTTCGAAGAC-----------ATCCG---A--AG-------------------------------------------------------------------------------------------------------------------------------------TG------------AGCTGCGAGGCAA
droBia1 scf7180000302428:7958034-7958260 - T-CAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGACCAT-----------------TTGAAGTAG-----------------------G----------------------------------------------------ATTCTTTTTT--CAA------------------ACTGCCAGCAAA---GA----AG-C-----------AG---A---A---CAA-------C---AACA------------------------------------------G------------------------------AAC---------ACCGATAGGCGGAA-T----------CAA--------GTCGAGT-----------------------------------------------------------------AGAAAATTTT-AAAAAATA--TTTTTTATCAACAATATTT----TTGAAA-AA-CTTTCGAAGAC-----------ATCCG---A--AGAAGT-------AG---CAC-----------------------A---------------------------------------------------------C-A----CAG-----------------------AG------------AGCTTCGAGGCAA
droTak1 scf7180000414372:23487-23722 - T-CAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGTCCAT-----------------CTGAAGTAG-----------------------G----------------------------------------------------ATTCTTTTTT---AAG-CCGC----CCAC--TTACTGCCAGCAAG---GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------G------------------------------AAC---------ACCGATAGGCAGAA-T----------AAA--------GTCGAGT-----------------------------------------------------------------AGAAAATTTT-AAAAAATA--TT-TTTATCCGCAATATTT--TTTTGAAA-AA-CTTTCGAAGAC-----------ATCCG---A--AGTAGA-------AG---TTG------------C--------------------------------------------------------------------ACA----CAG-----------------------AG------------AGCTCCGAGGCAA
droEle1 scf7180000490564:608200-608465 + T-CAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGTCCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCTTTTTTTTCAAA-TCGC----CCAC--TTACCGCCAGCAAA---GA-------------------AG---A---A---CAA------AC---AAAA------------------------------------------G------------------------------AAG---------ACCGATAAGCGGAA-T----------TCA--------GTCGAGC-----------------------------------------------------------------AGAAAATTTT-AAAAAATA--TTTTTTATCAACAATATTT--TTTTGAAA-AA-CTTTCGAAGAC-----------ATCCG---A--AGAAGT----G---CAAGCAC---ATAC----------ACACAC-------------------------------------------------------------AGA--AG-----------------------CG------------AGCTTCCAGGCAA
droRho1 scf7180000776514:4505-4769 + T-CAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGTCCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCTTTTT---CAAA-TCGC----CCAC--TTACCGCCAGCAAA-AACA-------------------AG---A---A---CAA------AC---AAAA------------------------------------------G------------------------------AAG---------ACCGATAAGCGGAA-T----------TAA--------GTCGAGT-----------------------------------------------------------------AGAAAATTTT-AAAAAATA--TTTTTTATCAACAATATTT--TTTTGAAA-AA-CTTTCGAAGAC-----------ATCCG---A--AGAAGT-------A--AGCAC---ACAC----------ACACAC-------------------------------------------------------------AGAATAA-----------------------AG------------AGCTCCGAGGCAA
droFic1 scf7180000453807:969275-969512 + T-CAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGTCCAA-----------------CTGAAGTAGGGGA--------AAGCGCTTAG-G----------------------------------------------------ATTCCTTTTTT--AGA-CCGC----CCAC--TTACCGCCAGCAAA---GA-------------------AC---A---A---GAA-------C---AAAC------------------------------------------G------------------------------ACG---------AGCGATAAGCGAAC-T----------TAA--------GTCGAGT-----------------------------------------------------------------AGAAAATTTT-AAAAAATA--TTTTTTATCAACAATATTT----TTGAAA-AA-CTTTCGAAGAC-----------ATCCG---A--AGT-------------------------------------------------------------------------------------------------------------------------------------G--------AAAAGGCTGCCAGGCAA
droKik1 scf7180000302486:2402100-2402361 + TCCAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAAAATTAAGTCCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCTTTTG--------CCGT----CCAC--TTACCGCCAGCAAACA-GA-------------------A----A---A---CAGCAAAGATC---AAAC------------------------------------------A--ACGGCTCAG-------------------AA--CTGAG---AACGATAAGCGGAT-G----------CAAGCA-----GTCTAGT-----------------------------------------------------------------AGAAAATTTTTTCAAAATA--TTTCTTATCAACAATATTT---TTCGAAA-AA-CTTTTGAAGAC-----------ATCCG---A--AGGAGA-------AG---A--------------------------------------------------------------------------------------------------------------------AG------------AGCTTT-AGCTTA
droAna3 scaffold_13337:3559843-3560119 - T-TAATTACAGAACGA-ACAACGACCGA--CTATTAACGA--TTAAAATTAAGTCCAA-----------------TTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTACCATTGTA-------------CCAT--TTTCCAACAACAA-CAGCA-ACAAT-T-----------AG---A---A---CAA-------C---AATA---------------------------------------GAAGCAAC-------AGCAACTTCTG--------------------AGCCATAAGCGGATAA----------CAA--------GTGTTGT-----------------------------------------------------------------TGAAAATTTTTTCCAAATA--TTTTTTATCAACAATATTT---TTTGAAA-AA-CTTTCAAAGAAAC---------ACCCGTGTA--AGAAGC----G---------A--------ATAGCA--------AA-------------------------------------------------------------GA--AG-----------------------AG------------AGCTTCCAGGCAA
droBip1 scf7180000396387:44746-45016 + TTCAATTACAGAACGA-ACAACGACCGA--CTATTAACGA--TTAAAATTAAGCCCAA-----------------TTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTTCCATTA---------TA----CCAT--TTACCAACAACAA-CAACA-------------------AG---A---G---CAA-------C---AATA---------------------------------------GAAGCAAC-------AGCAACTTCTG--------------------AGCTATAAGCGGATAA----------CAA--------GTGTTGT-----------------------------------------------------------------AGAAAATTTTTTCCAAATA--TT-TTTATCAACAATATTT---TTTGAAA-AA-CTTTTGAAGACAC---------ACCCGTGAA--AGAAGC----G---------T--------ATAGCA--------AA-------------------------------------------------------------GA--AG-----------------------AG------------AGCTTCGAGGCAA
dp5 XR_group6:9849018-9849391 - TTCAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGTCCAACAG-AAACT---GAAAGCTGAAGTGGGGGAAAACTGAAAAGTGTTTGG-A----------------------------------------------------ATTCTGTTTT-CC-----------------------AACAACAA-CAAC-------------------------A---GCAACAA-------C---AACAGAACAGCCACAAGCAACCAGAAACCAGAGAACACCAACAAAAAGACC-------AACAACTTGTAAACCAC-T----CTTAA---AACGATAAGCGGAT-C----------CAA--------GTCCCACACAGAAGTTTTTACT--------------------ACGAGAAAAAACTGCAGAAGAGTTTGGGGCAGAAAATTTA-AAAAAATA--TTTTTTATCAACAATATTT---TTCGAAA-AACTTTTTGAAGAA-ACCCGAAC----------------AGC-------AT---CAGA--------------------------------------------------------------------------------AGA----AAG---------------------------AAAGAGA-----ATAAGAGAGGA
droPer2 scaffold_61:127845-128215 - TTCAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGTCCAACAG-AAACT---GAAAGCTGAAGTGGGGGAAAACTGAAAAGTGTTTGG-A----------------------------------------------------ATTCTGTTTT-CC-----------------------AACAACAA-CAGCA-------------------A------------CAA-------C---AACAGAACAGCCACAAGCAACCAGAAACCAGAGAACACCAACAAAAAGAGC-------AACAACTTGTAAACCAC-T----CTTAA---AACGATAAGCGGAT-C----------CAA--------GTCCCACACAGAAGTTTTTACT--------------------ACGAGAAAAAACTGCAGAAGAGTTTGGGGCAGAAAATTTA-AAAAAATA--TTTTTTATCAACAATATTT---TTCGAAA-AACTTTTTGAAGAA-ACCCGAAC----------------AGC-------AT---CAGA--------------------------------------------------------------------------------AGA----AAG---------------------------AAAGAGA-----ATAAGAGAGGA
droWil2 scf2_1100000004762:1086872-1087265 - T-TAATTACAGAACGA-ACAACGACCGA--CGATTAACGA--TTAAAATTAAGCGTAACAGCAAACTATTTCATACTGAAGTTGGGGG--------AAGTGTTTAG-AATATATATACATAC--------------------------------------A-TATTTTTTTGTG------------TACCTCAGCCGTCAGCAAC-AGCA-------------------AC---T---GCAACAA-------CAACAAAA------------------------------------------G------------------------------CAAC--------TTTAATAACTGG-C-C----------TAA--------GTCTTGT------------AA-AAAA---------CAAAAAA---AAAAAAAA-------------------CGAAAATATT-TTTATATA--TTTTTTATCAAGCACATTT----TCGA---AA-CTTTTAAAGAC-----------AGTCG---ACAAC--GA-------CG---A--------------CGAGAAAAAGG-AGACGAGCAAAGTCGAGTCGAGTCGAGCAAACCAGTGAGAATCAGGAAAGTAAAGGC---AACGAAAGGAAAGCAAAGTAAAGGAACTCAAG-----------TTTCTTCCAGTCGA
droVir3 scaffold_13049:8642175-8642493 - T-TAATTACAGAACGA-ACAACGAACCA--CGATTAACGA--TTTAAATTAAGCT--A-----------------CTTAC-----------------------TAGCGG-----------------GCATATGCAGATTTATTGAAGCTAGGGTAAATTG-------TTT--AGAA-TTGC----CG--------CAACAACAA-TAGCA-------------------AC---A---GCAACAA-------CATCAAAA------------------------------------------GCGAC-------AACAATTGT---------------------------TAAGCCT---T----------TAAGCGGCCTAGTCTCTT------------AA-AACTTGC--GCTCCAAAAACACGAGGCTAAAC------------------T-GAAATTTT-AAAATATT--TTTTATATCAACGATAATT----T--AAA-AG-TTTTCGAAGACAAGCCGGAC------------AACAAA-------------------------TAGCAGGAAGAAGC-------------------------------------------------------------AGCAGCAGCA--------------------GCAGCAAGTGA------------ATAA
droMoj3 scaffold_6680:6699450-6699773 + T-TAATTACAGAACGAAACAACGAACCACACGATTAACGATATTTAAATTAAGC--TA-----------------CTGAT-----------------------TAGCCACATACATAAATACATATGTATATGCA---TAATACAAGCTGGGGCTAATTG-------TTT--AGAA-TCG-----------------CAA-CAA-TA-GAAACAATATAACCAACAACAATAACAACAA---TAA-------C---AAC-----AAC-----------------------------------T------------------------------ACG---------AACAATAAGCCGAT-TAGCAGCTGCCCAC--------GTCTCGGG----------------------------------------CTGAAG------------------TGAAAATTTT-A--AAATA--TTTTTTATCAACAATAATT----T-AAAA-GT-TTTTCGGAGACAACCCGGACACAA---------ACAAGCAGCTGGAAG---TTG-----------------------A---------------------------------------------------------CGA----AGA-----------------------AG-----------AAG--AAGAGGCAG
droGri2 scaffold_15110:4381418-4381674 - ---ATTTGCAGAACGA-ACAACGAACTA--CGATTAACGA--TTTAAATTAAG----------------------CAGAAGCTGGGGA--------AATACTTTAG-AAG-TAGA---------------------------------------------AGT--------------------------------------CGAA---GT-------------------AG---A---A---CAG-------C---AACA-------------------------------------------------------ACAAATTGAAAGTCAATT----GTTAAGTAGTCGATAAGTGGT-------------CTA--------GTCTCT-------GTTTT-AGTAACTTGCACGCG--------------CCAAAG----------T-------TGA-AATCTT-A--AAATA--TT-TTTATCAACAATAATT----T-AAAA-GT-TTTTCGAACACAAGCCGGAC------------AACAAA-------------------------CAGC-----------------------------------------------------------------------------A-----------------------AA------------AGCTAAAAGGGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
T-CAATTACAGAACGA-ACAACGACCGA--CATTTAACGA--TTAACATTAAGACCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCCTTTTTTCCGA------------------ACCGCCAGCAAA---GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------G------------------------------AAA---------CCCGATAAGCGGAA-C----------TAA--------GTCGCGT-----------------------------------------------------------------GGAAGATTTT-AAAAAATA--TTTTTTATCAACAATATTT----TTGAAA-AA-CTTCCAAAGACCC---AAAGACATTCG---A--AGCAGT-------AG---CCG-----------------------A---------------------------------------------------------CGA----CAG-----------------------AG-----------AAGCTTCGAGGCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AA-CTTCCAAAGACCC---AAAGAC.............................................................................................................................................................................2215.00500500000000000000
..................................................................................................................................................................................................................................................................AA------------------------------------------G------------------------------AAA---------CCCGATAAGCGGAA-C----------T...........................................................................................................................................................................................................................................................................................................................................2213.00300300000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA-AA-CTTCCAAAGACC.......................................................................................................................................................................................2013.00300300000000000000
..........................GA--CATTTAACGA--TTAACATTAAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300300000000000000
.............................................ACATTAAGACCAA-----------------CTGAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
......................................................................................................................................................................TTTTTCCGA------------------ACCGCCAGCAAA---GA-------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................AA-C----------TAA--------GTCGCGT-----------------------------------------------------------------GGAAGATT.................................................................................................................................................................................................................................................2111.00100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----CAG-----------------------AG-----------AAGCTTCGAGGC..1911.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TTGAAA-AA-CTTCCAAAGACCC---...................................................................................................................................................................................2211.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................A-C----------TAA--------GTCGCGT-----------------------------------------------------------------GGAAGATT.................................................................................................................................................................................................................................................2011.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................A-C----------TAA--------GTCGCGT-----------------------------------------------------------------GGAAGAT..................................................................................................................................................................................................................................................1911.00100100000000000000
..................................................................................AGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................TAA--------GTCGCGT-----------------------------------------------------------------GGAAGATT.................................................................................................................................................................................................................................................1811.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------AG---CCG-----------------------A---------------------------------------------------------CGA----CAG-----------------------AG-----------AA............1811.00100000000000100000
.................................................TAAGACCAA-----------------CTGAAGTAGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTT----TTGAAA-AA-CTTCCAAAG..........................................................................................................................................................................................2211.00100000000000100000
......................................................CCAA-----------------CTGAAGTAGGGGA--------AAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
................................................................................................................................................................................................................GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------G------------------------------AAA---------CC....................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
................................................................................................................................................................ATTCCTTTTTTCCGA------------------ACCGCCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
droSec2
T-CAATTACAGAACGA-ACAACGACCGA--CATTTAACGA--TTAACATTAAGACCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCCTTTTTTCCGAATTCGC----CCAC--ATACCGCCAGCAAA---GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------G------------------------------AAA---------CCCGATAAGCGGAA-C----------TAA--------GTCGCGT-----------------------------------------------------------------CGAAGATTTT-AAAAAATA--TTTTTTATCAACAATATTT----TTGAAA-AA-CTTCCAAAGACCC---ATAGACATTTC---A--AGCAGT-------AG---CCG-----------------------A---------------------------------------------------------CGA----CAG-----------------------AG-----------AAGCTTCAAGGCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................CGCGT-----------------------------------------------------------------CGAAGATTTT-AAAAAAT.......................................................................................................................................................................................................................................2212.0020020
.............................................................................GAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CCG-----------------------A---------------------------------------------------------CGA----CAG-----------------------AG-----------AAGCT.........1911.0010010
dm3
T-CAATTACAGAACGA-ACAACGACCGA--CATTTAACGA--TTAACATTAAGACCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCCTTTTTTCCGAATTCGC----CCAC--ATACCGCCAGCAAA---GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------C------------------------------AAAA--------ACCGATAAGCGGAA-C----------TAA--------GTCGCGT-----------------------------------------------------------------GGAAGATTTT-AAAAAATATTCTTTTTATCAACAATATTT---TTTGAAA-AA-CTTCCAAAGACCC---AAAGACATTCG---A--AGCAGT-------AG---CCG-----------------------A---------------------------------------------------------CAA----CAG-----------------------AG-----------AAGCTTCGAGGCAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................GT-----------------------------------------------------------------GGAAGATTTT-AAAAAATATT....................................................................................................................................................................................................................................2219.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100300000000000100000000000000001000100000000
................................................................................................................................................................................................................................................................................................................................................................................................CGCGT-----------------------------------------------------------------GGAAGATTTT-AAAAAAT.......................................................................................................................................................................................................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----CAG-----------------------AG-----------AAGCTTCGAGGCA.1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................................AC--ATACCGCCAGCAAA---GA-------------------AG---A---A---CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................TACCGCCAGCAAA---GA-------------------AG---A---A---CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................TAAGACCAA-----------------CTGAAGTAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AC--ATACCGCCAGCAAA---GA-------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CTTCCAAAGACCC---AAAGACATTC.........................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................A-----------------CTGAAGTAGGGGA--------AAGTGCTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CGT-----------------------------------------------------------------GGAAGATTTT-AAAAAATAT.....................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000
......................................................................................GA--------AAGTGCTTAG-G----------------------------------------------------ATTCCTTTTTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-----------------------AG-----------AAGCTTCGAGGCA.1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACCC---AAAGACATTCG---A--AGCAGT-------.....................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GA--------AAGTGCTTAG-G----------------------------------------------------ATTCCTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................CGCCAGCAAA---GA-------------------AG---A---A---CAA-------C---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GACCAA-----------------CTGAAGTAGGGGA--------AAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AAAGACATTCG---A--AGCAGT-------AG---CCG-----------------------A---------------------------------------------------------............................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................TACCGCCAGCAAA---GA-------------------AG---A---A---CAA-------C---A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------CAA----CAG-----------------------AG-----------AAGCTTCGAGGCA.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-CTTCCAAAGACCC---AAAGACA............................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CGC----CCAC--ATACCGCCAGCAAA---G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................A--------GTCGCGT-----------------------------------------------------------------GGAAGATTTT-AAA...........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATATTT---TTTGAAA-A.....................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................ATTCGC----CCAC--ATACCGCCAGCAAA---GA-------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AGACCAA-----------------CTGAAGTAGGGGA--------AAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GCGT-----------------------------------------------------------------GGAAGATTTT-AAAAAAT.......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................ACGACCGA--CATTTAACGA--TTAACATTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AGACCAA-----------------CTGAAGTAGGGGA--------AA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................AA-----------------CTGAAGTAGGGGA--------AAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAAGACCC---AAAGACA............................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................GTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCC---AAAGACATTCG---A--AGCA..............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GACCAA-----------------CTGAAGTAGGGGA--------AA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GCGT-----------------------------------------------------------------GGAAGATTTT-AAAAAATAT.....................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................................................AATTCGC----CCAC--ATACCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---A--AGCAGT-------AG---CCG-----------------------A---------------------------------------------------------CAA----C....................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATATTT---TTTGAAA-AA-CTTCCA.............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................GGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AA-----------------CTGAAGTAGGGGA--------AAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................ATACCGCCAGCAAA---GA-------------------AG---A---A---CAA-------C---A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTT---TTTGAAA-AA-CTTCCAAAG..........................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................GAATTCGC----CCAC--ATACCGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCG---A--AGCAGT-------AG---CCG-----------------------A---------------------------------------------------------CAA----CA...................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATTCG---A--AGCAGT-------AG---CCG-----------------------A---------------------------------------------------------............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC---AAAGACATTCG---A--AGCAGT-------A....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---TTTGAAA-AA-CTTCCAAAGACCC---AAA................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCC---AAAGACATTCG---A--AGCAGT-------.....................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TCCGAATTCGC----CCAC--ATACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................AGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTT---TTTGAAA-AA-CTTCCAAA...........................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CGCGT-----------------------------------------------------------------GGAAGATTTT-AAAAAATA......................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................A-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TAAGACCAA-----------------CTGAAGTAGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG---A--AGCAGT-------AG---CCG-----------------------A---------------------------------------------------------CA..........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.....................................................................................GGA--------AAGTGCTTAG-G----------------------------------------------------ATTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................GAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................CAGCAAA---GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------C------------------------------..................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................GACCAA-----------------CTGAAGTAGGGGA--------AAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................GAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................C--ATACCGCCAGCAAA---GA-------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CCGCCAGCAAA---GA-------------------AG---A---A---CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................CCAGCAAA---GA-------------------AG---A---A---CAA-------C---AAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----CAG-----------------------AG-----------AAGCTTCGAGGC..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACATTCG---A--AGCAGT-------A....................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GCGT-----------------------------------------------------------------GGAAGATTTT-AAAAAATA......................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GT-----------------------------------------------------------------GGAAGATTTT-AAAAAATATA....................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TAAGACCAA-----------------CTGAAGTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................C---AAAA------------------------------------------C------------------------------AAAA--------ACCGATAAGC............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GACCAA-----------------CTGAAGTAGGGGA--------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TAACATTAAGACCAA-----------------CTGAAGTAGGGGA--------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.................................................................................................................................................................................TCGC----CCAC--ATACCGCCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................A---GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------C------------------------------AA................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................AA---GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------C------------------------------A.................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................G---A---A---CAA-------C---AAAA------------------------------------------C------------------------------AAAA--------ACT...................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
T-TAATTACAGAACGA-ACAACGACCGA--CATCTAACGA--TTAACATTAAGACCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCTTTTTA-TCGAA-TCGC----CCAC--ATACCGCCAGCAGA---GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------G------------------------------AAAA--------CCCGATAAGCGGAA-C----------TAA--------GTCGAGT-----------------------------------------------------------------GGAAGATTTT-AAAAAATA--TTTTTTATCAACAATATTT----TCGAAA-AA-CTTCCAAAGAC-----------ATTCG---A--AGCAGT-------------------------------------------------------------------------------------------------------TAG-----------------------AA------------AGCTACGAGGCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................GGAA-C----------TAA--------GTCGAGT-----------------------------------------------------------------GGA......................................................................................................................................................................................................................................................1811.0010100000
...................................................................................................................................................................................................................................................................................................................................................................................................GT-----------------------------------------------------------------GGAAGATTTT-AAAAAAT.......................................................................................................................................................................................................................................1911.0010001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAATATTT----TCGAAA-AA-CTTCC..............................................................................................................................................................................................2611.0010100000
....................................................................................................................................................................................................................................................................................................................................................................GAA-C----------TAA--------GTCGAGT-----------------------------------------------------------------GGAA.....................................................................................................................................................................................................................................................1811.0010001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AGCAGT-------------------------------------------------------------------------------------------------------TAG-----------------------AA------------AGCTACGAGGC..2311.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCG---A--AGCAGT-------------------------------------------------------------------------------------------------------TAG-----------------------AA------------AGCTACGAGGC..2711.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGT-------------------------------------------------------------------------------------------------------TAG-----------------------AA------------AGCTACGAGG...2111.0010000010
..............................................................................................................................................................................................................................................................................................................................................AAA--------CCCGATAAGCGGAA-C----------TAA--------GTC..............................................................................................................................................................................................................................................................................................................................2411.0011000000
....................................................................................................................................................................................................................................................................................................................................................................GAA-C----------TAA--------GTCGAGT-----------------------------------------------------------------GGAAGA...................................................................................................................................................................................................................................................2011.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---A--AGCAGT-------------------------------------------------------------------------------------------------------TAG-----------------------AA------------AGCTACGAGGC..2511.0010000010
........................................................AA-----------------CTGAAGTAGGGGA--------AAGTGCTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...................................................................................................................................................................................................CGCCAGCAGA---GA-------------------AG---A---A---CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................TAA--------GTCGAGT-----------------------------------------------------------------GGAAGATTTT-AAAAAAT.......................................................................................................................................................................................................................................2711.0010000010
.......................................................CAA-----------------CTGAAGTAGGGGA--------AAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
......................................GA--TTAACATTAAGACCAA-----------------CTGAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................CGAGT-----------------------------------------------------------------GGAAGATTTT-AAAAAAT.......................................................................................................................................................................................................................................2211.0010000100
droYak3
T-CAATTACAGAACGA-ACAACGACCGA--CATTTAACGA--TTAACATTAAGACCAA-----------------CTGAAGTAGGGGC--------AAGTGCTTAG-G----------------------------------------------------ATTCTATTTT-TCGAA-TCGC----CCAT--ATACCGCCAGTAAA---GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------G------------------------------AAAA--------CCCGATAAGCAAAA-C----------TAA--------GTCGAGC-----------------------------------------------------------------GGAAGATTTT-AAAAAATA--TTTTTTATCAACAATATTT----TCGAAA-AA-CTTCCAAAGAC-----------ATTCG---A--AGCAGT-------AG---CAGTAGAAGCAATAGC-----------------------------------------------------------------------AGT--TG-----------------------AG------------AGCTGCGAGGCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................CGAGC-----------------------------------------------------------------GGAAGATTTT-AAAAAAT.......................................................................................................................................................................................................................................2212.00200100010000
.................................................TAAGACCAA-----------------CTGAAGTAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................CGAGC-----------------------------------------------------------------GGAAGATTTT-AAAA..........................................................................................................................................................................................................................................1911.00100000010000
.................................................................................................................................................................................................................................................................AAA------------------------------------------G------------------------------AAAA--------CCCGATAAGCAAA.........................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
............................................................................................................................................................................................................................................................................................................................................................GATAAGCAAAA-C----------TAA--------GTCGAGC-----------------------------------------------------------------GGA......................................................................................................................................................................................................................................................2511.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--TG-----------------------AG------------AGCTGCGAGGCA.1811.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCAATAGC-----------------------------------------------------------------------AGT--TG-----------------------AG------------AGC..........2211.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................AAAA-C----------TAA--------GTCGAGC-----------------------------------------------------------------GGAAGATT.................................................................................................................................................................................................................................................2311.00100000010000
....................................................GACCAA-----------------CTGAAGTAGGGGC--------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
....................................................GACCAA-----------------CTGAAGTAGGGGC--------AAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------------------------------------------------AGT--TG-----------------------AG------------AGCTGCGAGGCA.2011.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................CGAGC-----------------------------------------------------------------GGAAGATTTT-AAAAAATA--T...................................................................................................................................................................................................................................2411.00100000010000
..............................................................................................................................................................................................................................................................................................................................................AAA--------CCCGATAAGCAAAA-C----------TAA--------GT...............................................................................................................................................................................................................................................................................................................................2311.00101000000000
...............................................ATTAAGACCAA-----------------CTGAAGTAGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
................................................................................GTAGGGGC--------AAGTGCTTAG-G----------------------------------------------------ATTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
droEug1
T-CATTTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGACCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCTTTTTT-GCAAA-ACACCAACCCACATATACCGCCAGCA--------------------------AG---A---A---CAA------GC---AAAA------------------------------------------G------------------------------AAC---------ACCGATAAGCGGAA-C----------TAA--------GACGAGT-----------------------------------------------------------------TGGAAATTTT-CAAAAATA--TTTTTTATCAACAATATTTCTTTTTGAAAAAA-CTTTCGAAGAC-----------ATCCG---A--AG-------------------------------------------------------------------------------------------------------------------------------------TG------------AGCTGCGAGGCAASizeHit CountTotal NormTotal
No Reads
droBia1
T-CAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGACCAT-----------------TTGAAGTAG-----------------------G----------------------------------------------------ATTCTTTTTT--CAA------------------ACTGCCAGCAAA---GA----AG-C-----------AG---A---A---CAA-------C---AACA------------------------------------------G------------------------------AAC---------ACCGATAGGCGGAA-T----------CAA--------GTCGAGT-----------------------------------------------------------------AGAAAATTTT-AAAAAATA--TTTTTTATCAACAATATTT----TTGAAA-AA-CTTTCGAAGAC-----------ATCCG---A--AGAAGT-------AG---CAC-----------------------A---------------------------------------------------------C-A----CAG-----------------------AG------------AGCTTCGAGGCAASizeHit CountTotal NormTotal
No Reads
droTak1
T-CAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGTCCAT-----------------CTGAAGTAG-----------------------G----------------------------------------------------ATTCTTTTTT---AAG-CCGC----CCAC--TTACTGCCAGCAAG---GA-------------------AG---A---A---CAA-------C---AAAA------------------------------------------G------------------------------AAC---------ACCGATAGGCAGAA-T----------AAA--------GTCGAGT-----------------------------------------------------------------AGAAAATTTT-AAAAAATA--TT-TTTATCCGCAATATTT--TTTTGAAA-AA-CTTTCGAAGAC-----------ATCCG---A--AGTAGA-------AG---TTG------------C--------------------------------------------------------------------ACA----CAG-----------------------AG------------AGCTCCGAGGCAASizeHit CountTotal NormTotal
No Reads
droEle1
T-CAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGTCCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCTTTTTTTTCAAA-TCGC----CCAC--TTACCGCCAGCAAA---GA-------------------AG---A---A---CAA------AC---AAAA------------------------------------------G------------------------------AAG---------ACCGATAAGCGGAA-T----------TCA--------GTCGAGC-----------------------------------------------------------------AGAAAATTTT-AAAAAATA--TTTTTTATCAACAATATTT--TTTTGAAA-AA-CTTTCGAAGAC-----------ATCCG---A--AGAAGT----G---CAAGCAC---ATAC----------ACACAC-------------------------------------------------------------AGA--AG-----------------------CG------------AGCTTCCAGGCAASizeHit CountTotal NormTotal
No Reads
droRho1
T-CAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGTCCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCTTTTT---CAAA-TCGC----CCAC--TTACCGCCAGCAAA-AACA-------------------AG---A---A---CAA------AC---AAAA------------------------------------------G------------------------------AAG---------ACCGATAAGCGGAA-T----------TAA--------GTCGAGT-----------------------------------------------------------------AGAAAATTTT-AAAAAATA--TTTTTTATCAACAATATTT--TTTTGAAA-AA-CTTTCGAAGAC-----------ATCCG---A--AGAAGT-------A--AGCAC---ACAC----------ACACAC-------------------------------------------------------------AGAATAA-----------------------AG------------AGCTCCGAGGCAASizeHit CountTotal NormTotal
No Reads
droFic1
T-CAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGTCCAA-----------------CTGAAGTAGGGGA--------AAGCGCTTAG-G----------------------------------------------------ATTCCTTTTTT--AGA-CCGC----CCAC--TTACCGCCAGCAAA---GA-------------------AC---A---A---GAA-------C---AAAC------------------------------------------G------------------------------ACG---------AGCGATAAGCGAAC-T----------TAA--------GTCGAGT-----------------------------------------------------------------AGAAAATTTT-AAAAAATA--TTTTTTATCAACAATATTT----TTGAAA-AA-CTTTCGAAGAC-----------ATCCG---A--AGT-------------------------------------------------------------------------------------------------------------------------------------G--------AAAAGGCTGCCAGGCAASizeHit CountTotal NormTotal
No Reads
droKik1
TCCAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAAAATTAAGTCCAA-----------------CTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTCTTTTG--------CCGT----CCAC--TTACCGCCAGCAAACA-GA-------------------A----A---A---CAGCAAAGATC---AAAC------------------------------------------A--ACGGCTCAG-------------------AA--CTGAG---AACGATAAGCGGAT-G----------CAAGCA-----GTCTAGT-----------------------------------------------------------------AGAAAATTTTTTCAAAATA--TTTCTTATCAACAATATTT---TTCGAAA-AA-CTTTTGAAGAC-----------ATCCG---A--AGGAGA-------AG---A--------------------------------------------------------------------------------------------------------------------AG------------AGCTTT-AGCTTASizeHit CountTotal NormTotal
No Reads
droAna3
T-TAATTACAGAACGA-ACAACGACCGA--CTATTAACGA--TTAAAATTAAGTCCAA-----------------TTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTACCATTGTA-------------CCAT--TTTCCAACAACAA-CAGCA-ACAAT-T-----------AG---A---A---CAA-------C---AATA---------------------------------------GAAGCAAC-------AGCAACTTCTG--------------------AGCCATAAGCGGATAA----------CAA--------GTGTTGT-----------------------------------------------------------------TGAAAATTTTTTCCAAATA--TTTTTTATCAACAATATTT---TTTGAAA-AA-CTTTCAAAGAAAC---------ACCCGTGTA--AGAAGC----G---------A--------ATAGCA--------AA-------------------------------------------------------------GA--AG-----------------------AG------------AGCTTCCAGGCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................ATAAGCGGATAA----------CAA--------GTGTT............................................................................................................................................................................................................................................................................................................................2012.002011000
.............................................................................................................................................................................................................................................................................................................AGCAAC-------AGCAACTTCTG--------------------AGCC..................................................................................................................................................................................................................................................................................................................................................................2112.002020000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC----G---------A--------ATAGCA--------AA-------------------------------------------------------------GA--AG-----------------------AG------------AGC..........2211.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-AA-CTTTCAAAGAAAC---------ACCCGTGT.....................................................................................................................................................................2511.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------ACCCGTGTA--AGAAGC----G---------A--------ATAGC................................................................................................................................2311.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA--AGAAGC----G---------A--------ATAGCA--------AA-------------------------------------------------------------GA--AG-----------------------AG------------AGC..........2811.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AGAAGC----G---------A--------ATAGCA--------AA-------------------------------------------------------------GA--AG-----------------------AG------------AG...........2511.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------ACCCGTGTA--AGAAGC----G---------A--------.....................................................................................................................................2011.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--AG-----------------------AG------------AGCTTCCAGGCA.1811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----G---------A--------ATAGCA--------AA-------------------------------------------------------------GA--AG-----------------------AG------------AGC..........2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AGAAGC----G---------A--------ATAGCA--------AA-------------------------------------------------------------GA--AG-----------------------...........................2111.001010000
..............................................................................................................................................................................................................AGCA-ACAAT-T-----------AG---A---A---CAA-------C---AATA---------------------------------------GAAGC...............................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AGAAGC----G---------A--------ATAGCA--------AA-------------------------------------------------------------GA--AG-----------------------AG------------AGCT.........2711.001010000
......................................................................................GA--------AAGTGCTTAG-G----------------------------------------------------ATTACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
...........................................................................................................................................................................................................................................................................................................................GCAACTTCTG--------------------AGCCATAAGCGGAT........................................................................................................................................................................................................................................................................................................................................................2411.001000001
..............................................................................................................................................................................................................................................................................................................GCAAC-------AGCAACTTCTG--------------------AGCC..................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AGAAGC----G---------A--------ATAGCA--------AA-------------------------------------------------------------GA--....................................................1911.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA--------AA-------------------------------------------------------------GA--AG-----------------------AG------------AGCTTCCAGGC..2311.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------------------------------------------------GA--AG-----------------------AG------------AGCTTCCAGGC..1911.001010000
...............................................................................................................................................................................................................GCA-ACAAT-T-----------AG---A---A---CAA-------C---AAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
................................................................................................................................................................................................................................................................................................................AAC-------AGCAACTTCTG--------------------AGCC..................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAAGAAAC---------ACCCGTGT.....................................................................................................................................................................1911.001010000
.........................................................A-----------------TTGAAGTAGGGGA--------AAGTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..................................................................................................GTGCTTAG-G----------------------------------------------------ATTACCATTGTA-------------CCAT--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-CTTTCAAAGAAAC---------ACCCGTGT.....................................................................................................................................................................2311.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................TGTTGT-----------------------------------------------------------------TGAAAATTTTTTCCA..........................................................................................................................................................................................................................................2111.001001000
...............................................................................................................................................................................................................................................................................................................................................................AAGCGGATAA----------CAA--------GTGTTGT-----------------------------------------------------------------TGAAA....................................................................................................................................................................................................................................................2511.001001000
.........................................................................................................................................................................................................................T-----------AG---A---A---CAA-------C---AATA---------------------------------------GAAGC...............................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AGAAGC----G---------A--------ATAGCA--------AA-------------------------------------------------------------GA--AG-----------------------AG------------AGC..........2611.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAAGAAAC---------ACCCGTGT.....................................................................................................................................................................2011.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-AA-CTTTCAAAGAAAC---------ACCCGTGC.....................................................................................................................................................................2611.001010000
..................................................................................................................................................................................................................................................................................................................C-------AGCAACTTCTG--------------------AGCCATAAGCGGAT........................................................................................................................................................................................................................................................................................................................................................2611.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................TGTTGT-----------------------------------------------------------------TGAAAATTTTTTCCAAATA--....................................................................................................................................................................................................................................2511.001010000
...............................................................................................................................................................................................TTTCCAACAACAA-CAGCA-AC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.................................................TAAGTCCAA-----------------TTGAAGTAGGGGA--------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...............A-ACAACGACCGA--CTATTAACGA--T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-CTTTCAAAGAAAC---------ACCCGC.......................................................................................................................................................................2111.001010000
droBip1
TTCAATTACAGAACGA-ACAACGACCGA--CTATTAACGA--TTAAAATTAAGCCCAA-----------------TTGAAGTAGGGGA--------AAGTGCTTAG-G----------------------------------------------------ATTTCCATTA---------TA----CCAT--TTACCAACAACAA-CAACA-------------------AG---A---G---CAA-------C---AATA---------------------------------------GAAGCAAC-------AGCAACTTCTG--------------------AGCTATAAGCGGATAA----------CAA--------GTGTTGT-----------------------------------------------------------------AGAAAATTTTTTCCAAATA--TT-TTTATCAACAATATTT---TTTGAAA-AA-CTTTTGAAGACAC---------ACCCGTGAA--AGAAGC----G---------T--------ATAGCA--------AA-------------------------------------------------------------GA--AG-----------------------AG------------AGCTTCGAGGCAASizeHit CountTotal NormTotal
No Reads
dp5
TTCAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGTCCAACAG-AAACT---GAAAGCTGAAGTGGGGGAAAACTGAAAAGTGTTTGG-A----------------------------------------------------ATTCTGTTTT-CC-----------------------AACAACAA-CAAC-------------------------A---GCAACAA-------C---AACAGAACAGCCACAAGCAACCAGAAACCAGAGAACACCAACAAAAAGACC-------AACAACTTGTAAACCAC-T----CTTAA---AACGATAAGCGGAT-C----------CAA--------GTCCCACACAGAAGTTTTTACT--------------------ACGAGAAAAAACTGCAGAAGAGTTTGGGGCAGAAAATTTA-AAAAAATA--TTTTTTATCAACAATATTT---TTCGAAA-AACTTTTTGAAGAA-ACCCGAAC----------------AGC-------AT---CAGA--------------------------------------------------------------------------------AGA----AAG---------------------------AAAGAGA-----ATAAGAGAGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................TTTACT--------------------ACGAGAAAAAACTGCAGAAGA..................................................................................................................................................................................................................................................................2712.0020200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----------------AGC-------AT---CAGA--------------------------------------------------------------------------------AGA----AAG---------------------------AAAG...................2111.0010000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---TTCGAAA-AACTTTTTGAAGAA-ACCC...................................................................................................................................................................................2811.0010001000000
................................................................................................................................................................................................................................................................................................................................................................AGCGGAT-C----------CAA--------GTCCCACAC........................................................................................................................................................................................................................................................................................................................2011.0010001000000
.........................................................................AGCTGAAGTGGGGGAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGCAGAAGAGTTTGGGGCA........................................................................................................................................................................................................................................................2311.0010100000000
...............................................................AACT---GAAAGCTGAAGTGGGGGAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACTGCAGAAGAGTTTGGGGCAGA......................................................................................................................................................................................................................................................2811.0010001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTACT--------------------ACGAGAAAAAACTGCAGAA....................................................................................................................................................................................................................................................................2411.0010100000000
.................................................................CT---GAAAGCTGAAGTGGGGGAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---CAGA--------------------------------------------------------------------------------AGA----AAG---------------------------AAAGAGA-----A..........1911.0010001000000
....................................................................................................................................................................................................................................................................................................................................................................GAT-C----------CAA--------GTCCCACACAGAAGTT.................................................................................................................................................................................................................................................................................................................2311.0010100000000
................................................................ACT---GAAAGCTGAAGTGGGGGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000
....................................................................................................................................................................................................................................................................................................................................AAACCAC-T----CTTAA---AACGATAAGCG...........................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...................................................................................................................................................................................................................................................AA-------C---AACAGAACAGCCACAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................AACAGCCACAAGCAACCAGAAACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000000
..................................................................T---GAAAGCTGAAGTGGGGGAAAACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
droPer2
TTCAATTACAGAACGA-ACAACGACCGA--CAATTAACGA--TTAACATTAAGTCCAACAG-AAACT---GAAAGCTGAAGTGGGGGAAAACTGAAAAGTGTTTGG-A----------------------------------------------------ATTCTGTTTT-CC-----------------------AACAACAA-CAGCA-------------------A------------CAA-------C---AACAGAACAGCCACAAGCAACCAGAAACCAGAGAACACCAACAAAAAGAGC-------AACAACTTGTAAACCAC-T----CTTAA---AACGATAAGCGGAT-C----------CAA--------GTCCCACACAGAAGTTTTTACT--------------------ACGAGAAAAAACTGCAGAAGAGTTTGGGGCAGAAAATTTA-AAAAAATA--TTTTTTATCAACAATATTT---TTCGAAA-AACTTTTTGAAGAA-ACCCGAAC----------------AGC-------AT---CAGA--------------------------------------------------------------------------------AGA----AAG---------------------------AAAGAGA-----ATAAGAGAGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................ATAAGCGGAT-C----------CAA--------GTCCC............................................................................................................................................................................................................................................................................................................................1911.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TTCGAAA-AACTTTTTGAAGAA-.......................................................................................................................................................................................2211.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------AGC-------AT---CAGA--------------------------------------------------------------------------------AGA----AAG---------------------------AAAGAG.................2211.001010000
...........................................................................................................................................................................................................................................................................................................AAAAGAGC-------AACAACTTGTAAACC......................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGCAGAAAATTTA-AAAA..........................................................................................................................................................................................................................................2011.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----------------AGC-------AT---CAGA--------------------------------------------------------------------------------AGA----AAG---------------------------AAAGAGA-----ATA........2711.001000001
droWil2
T-TAATTACAGAACGA-ACAACGACCGA--CGATTAACGA--TTAAAATTAAGCGTAACAGCAAACTATTTCATACTGAAGTTGGGGG--------AAGTGTTTAG-AATATATATACATAC--------------------------------------A-TATTTTTTTGTG------------TACCTCAGCCGTCAGCAAC-AGCA-------------------AC---T---GCAACAA-------CAACAAAA------------------------------------------G------------------------------CAAC--------TTTAATAACTGG-C-C----------TAA--------GTCTTGT------------AA-AAAA---------CAAAAAA---AAAAAAAA-------------------CGAAAATATT-TTTATATA--TTTTTTATCAAGCACATTT----TCGA---AA-CTTTTAAAGAC-----------AGTCG---ACAAC--GA-------CG---A--------------CGAGAAAAAGG-AGACGAGCAAAGTCGAGTCGAGTCGAGCAAACCAGTGAGAATCAGGAAAGTAAAGGC---AACGAAAGGAAAGCAAAGTAAAGGAACTCAAG-----------TTTCTTCCAGTCGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGAGAATCAGGAAAGTAAAGGC---.........................................................2512.00220000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TCGA---AA-CTTTTAAAGAC-----------AGTCG---ACA..................................................................................................................................................................2612.00220000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGAC-----------AGTCG---ACAAC--GA-------CG---A--------------CGAGAA...........................................................................................................................2812.00220000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGGAAAGTAAAGGC---.........................................................1911.00100010
...............................................................................................................................................................................................................................................................................................................................................AC--------TTTAATAACTGG-C-C----------TAA--------GTCTTGT------------AA-A..........................................................................................................................................................................................................................................................................................................2911.00101000
.....................................................................................................................................................................................................................................AC---T---GCAACAA-------CAACAAAA------------------------------------------G------------------------------C.................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
..............................................................................................................................................................................................................................................................................................................................................AAC--------TTTAATAACTGG-C-C----------TAA--------GTC..............................................................................................................................................................................................................................................................................................................................2311.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATA--TTTTTTATCAAGCACA....................................................................................................................................................................................................................2211.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--GA-------CG---A--------------CGAGAAAAAGG-AGACGAGC.............................................................................................................2511.00110000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----TCGA---AA-CTTTTAAAGAC-----------AGTCG---ACA..................................................................................................................................................................2711.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGTGAGAATCAGGAAAGT..................................................................2211.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGAC-----------AGTCG---ACAAC--..............................................................................................................................................................1911.00110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---ACAAC--GA-------CG---A--------------CGAGAAAAAGG-A....................................................................................................................2411.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--GA-------CG---A--------------CGAGAAAAAGG-AGACGAGC.............................................................................................................2611.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAAGCAAAGTAAAGGAACTCAAG-----------TT............2811.00110000
....................ACGACCGA--CGATTAACGA--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAAGAC-----------AGTCG---ACAAC--..............................................................................................................................................................2011.00110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAA---------CAAAAAA---AAAAAAAA-------------------CGAA.....................................................................................................................................................................................................................................................22100.10100010
droVir3
T-TAATTACAGAACGA-ACAACGAACCA--CGATTAACGA--TTTAAATTAAGCT--A-----------------CTTAC-----------------------TAGCGG-----------------GCATATGCAGATTTATTGAAGCTAGGGTAAATTG-------TTT--AGAA-TTGC----CG--------CAACAACAA-TAGCA-------------------AC---A---GCAACAA-------CATCAAAA------------------------------------------GCGAC-------AACAATTGT---------------------------TAAGCCT---T----------TAAGCGGCCTAGTCTCTT------------AA-AACTTGC--GCTCCAAAAACACGAGGCTAAAC------------------T-GAAATTTT-AAAATATT--TTTTATATCAACGATAATT----T--AAA-AG-TTTTCGAAGACAAGCCGGAC------------AACAAA-------------------------TAGCAGGAAGAAGC-------------------------------------------------------------AGCAGCAGCA--------------------GCAGCAAGTGA------------ATAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGACAAGCCGGAC------------AAC................................................................................................................................................................2013.003030000000000000000000000000000000000000000000000000000000000000
............ACGA-ACAACGAACCA--CGATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002020000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................T---T----------TAAGCGGCCTAGTCTCTT------------A.............................................................................................................................................................................................................................................................................................................2112.002010000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................ATTGT---------------------------TAAGCCT---T----------TAAGCGGCC...................................................................................................................................................................................................................................................................................................................................2212.002020000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AACAA-------CATCAAAA------------------------------------------GCGAC-------A....................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000100
.......................................................................................................................................................................TTT--AGAA-TTGC----CG--------CAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------------TAGCAGGAAGAAGC-------------------------------------------------------------AGCAGCA..................................................2311.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATATCAACGATAATT----T--AAA-AG-TTTTCGAAGACAAGCCGGAC------------...................................................................................................................................................................4511.001000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACACGAGGCTAAAC------------------T-GA.....................................................................................................................................................................................................................................................1811.001000000000000000000000010000000000000000000000000000000000000000
..............GA-ACAACGAACCA--CGATTAACGA--T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000010000000000000000000000000000000000000000000
..................CAACGAACCA--CGATTAACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................ATTG-------TTT--AGAA-TTGC----CG--------CAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
.................ACAACGAACCA--CGATTAACGA--T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
....................................................................................................................................GCAGATTTATTGAAGCTAGGGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................................................................ACAACAA-TAGCA-------------------AC---A---GCAACAA-------CATCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................AGCTAGGGTAAATTG-------TTT--AGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................CAA-TAGCA-------------------AC---A---GCAACAA-------CATCAAAA------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
.............CGA-ACAACGAACCA--CGATTAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------------TAGCAGGAAGAAGC-------------------------------------------------------------AGC......................................................1911.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-AG-TTTTCGAAGACAAGCCGGAC------------...................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGAC------------AACAAA-------------------------TAGCAGGAAGAAGC-------------------------------------------------------------A........................................................2811.001000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-TTTTCGAAGACAAGCCGGAC------------A..................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................................................................................................................................................GCAACAA-------CATCAAAA------------------------------------------GCGAC-------AAC..................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................TATTGAAGCTAGGGTAAATTG-------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000100000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGGAC------------AACAAA-------------------------TAGCAGGAAGA.........................................................................................................................2611.001010000000000000000000000000000000000000000000000000000000000000
........................................................................................................AGCGG-----------------GCATATGCAGATTTATTGAAGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GT---------------------------TAAGCCT---T----------TAAGCGGCCT..................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................ATTGT---------------------------TAAGCCT---T----------TAAGCGGCCTA.................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
...............A-ACAACGAACCA--CGATTAACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
....................ACGAACCA--CGATTAACGA--T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000100
.............................................................................................................................................TTGAAGCTAGGGTAAATTG-------TTT--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................CAACAA-------CATCAAAA------------------------------------------GCGAC-------AAC..................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACACGAGGCTAAAC------------------T-GAA....................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................................................................................................................................................................................................................................................................................................CTT------------AA-AACTTGC--GCTCCAAAAAC.......................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA--------------------GCAGCAAGTGA------------ATA.1911.001000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................................................................ACAACAA-TAGCA-------------------AC---A---GCAACAA-------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2370.141000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------------------AGCAGCAGCA--------------------GCAGCAAGT..................20200.051000000000000000000000000000000000000100000000000000000000000000
droMoj3
T-TAATTACAGAACGAAACAACGAACCACACGATTAACGATATTTAAATTAAGC--TA-----------------CTGAT-----------------------TAGCCACATACATAAATACATATGTATATGCA---TAATACAAGCTGGGGCTAATTG-------TTT--AGAA-TCG-----------------CAA-CAA-TA-GAAACAATATAACCAACAACAATAACAACAA---TAA-------C---AAC-----AAC-----------------------------------T------------------------------ACG---------AACAATAAGCCGAT-TAGCAGCTGCCCAC--------GTCTCGGG----------------------------------------CTGAAG------------------TGAAAATTTT-A--AAATA--TTTTTTATCAACAATAATT----T-AAAA-GT-TTTTCGGAGACAACCCGGACACAA---------ACAAGCAGCTGGAAG---TTG-----------------------A---------------------------------------------------------CGA----AGA-----------------------AG-----------AAG--AAGAGGCAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................TGCCCAC--------GTCTCGGG----------------------------------------CTGAAG------------------TG.......................................................................................................................................................................................................................................................2312.002200000
..................................................................................................................................ATGCA---TAATACAAGCTGGGGCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...........................................................................................................................................................................................................................................................................................................................................................CAATAAGCCGAT-TAGCAGC................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................................................................GTATATGCA---TAATACAAGCTGGGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................................................................................................................................................AGCAGCTGCCCAC--------GTCTCGGG----------------------------------------CTGA.............................................................................................................................................................................................................................................................................2511.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGAGACAACCCGGACACAA---------ACAAGC............................................................................................................................................................2811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACCCGGACACAA---------ACAAGCAGCT........................................................................................................................................................2611.001000001
.................................................................................................................................................AGCTGGGGCTAATTG-------TTT--AGAA-T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.......................................................................................................................TACATATGTATATGCA---TAATACAAGCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
...........................................................................................................................................AATACAAGCTGGGGCTAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAAG---TTG-----------------------A---------------------------------------------------------CGA----AG...................................................1811.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................CGGG----------------------------------------CTGAAG------------------TGAAAATTTT-A--AAAT.......................................................................................................................................................................................................................................2511.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------------------CTGAAG------------------TGAAAATTTT-A--AA.........................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-GT-TTTTCGGAGACAACCC...................................................................................................................................................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................................ACG---------AACAATAAGCCGAT-TAGCAG.................................................................................................................................................................................................................................................................................................................................................2311.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACAA---------ACAAGCAGCTG.......................................................................................................................................................1911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AAAA-GT-TTTTCGGAGACAACC....................................................................................................................................................................................2211.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATT----T-AAAA-GT-TTTTCGGAGA.........................................................................................................................................................................................2411.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAA---------ACAAGCAGCTGGAAG---TTG-----------------------......................................................................................................................2311.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGACACAA---------ACAAGC............................................................................................................................................................2011.001100000
......................................................................................................................................A---TAATACAAGCTGGGGCTAATTG-------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TTTTTTATCAACAATAATT----T-AAAA-GT-...................................................................................................................................................................................................2711.001100000
.............................................................................................................CATACATAAATACATATGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.201100000
.......................................................................................................................................................................................................................................AACAACAA---TAA-------C---AAC-----AAC-----------------------------------T------------------------------AC................................................................................................................................................................................................................................................................................................................................................................................21110.091100000
droGri2
---ATTTGCAGAACGA-ACAACGAACTA--CGATTAACGA--TTTAAATTAAG----------------------CAGAAGCTGGGGA--------AATACTTTAG-AAG-TAGA---------------------------------------------AGT--------------------------------------CGAA---GT-------------------AG---A---A---CAG-------C---AACA-------------------------------------------------------ACAAATTGAAAGTCAATT----GTTAAGTAGTCGATAAGTGGT-------------CTA--------GTCTCT-------GTTTT-AGTAACTTGCACGCG--------------CCAAAG----------T-------TGA-AATCTT-A--AAATA--TT-TTTATCAACAATAATT----T-AAAA-GT-TTTTCGAACACAAGCCGGAC------------AACAAA-------------------------CAGC-----------------------------------------------------------------------------A-----------------------AA------------AGCTAAAAGGGAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:06 PM