ID:dsi_18194 |
Coordinate:3r:10170549-10170614 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
exon [3r_10170296_10170548_+]; CDS [3r_10170296_10170548_+]; CDS [3r_10170615_10170860_+]; exon [3r_10170615_10170860_+]; intron [3r_10170549_10170614_+]
No Repeatable elements found
| ##################################################------------------------------------------------------------------################################################## AAATATCCTAGTAGACCAGCAGACAGCTGAGGTCATTCATATCGATTTTGGTGGGTGCAACATTTTCAGGACATATATGCATATATTAAGTAACGATGCTTGTGTTCATTTTTCAGGTATTGCCTTTGAGCAGGGCAAAATCCAGACGACACCAGAGACCGTTCCC **************************************************..(((((.((((....((((.(((...(((.........)))...)))))))))))))))).....************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553485 Chicharo_3 day-old ovaries |
GSM343915 embryo |
SRR618934 dsim w501 ovaries |
SRR902008 ovaries |
SRR902009 testis |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................TGAGGTCATTCATATCGATTTTGGTA................................................................................................................. | 26 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................AAATCCAGACGACACCAGAGACCGT.... | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...TATCCTAGTAGACCAGCAGACAGCTGA........................................................................................................................................ | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .................AGCAGACAGCTGAGGTCATTCATATCGA......................................................................................................................... | 28 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................TAAGGAACGATGCTTGTGAT............................................................ | 20 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........TAGTAGAACAGCAGACAGCT.......................................................................................................................................... | 20 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .....TACTAGTAGACCAGCAGACAGCTGA........................................................................................................................................ | 25 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................AATCATATCCATTTTGGCGGGT.............................................................................................................. | 22 | 3 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................AAAGTCCAGACAACACCAAAG......... | 21 | 3 | 11 | 0.09 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ................................................................................................................TCAGGTTTTTCGTTTGAGCA.................................. | 20 | 3 | 13 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ....................................................................................................................GTATTGCCTTTGAAC................................... | 15 | 1 | 14 | 0.07 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
|
TTTATAGGATCATCTGGTCGTCTGTCGACTCCAGTAAGTATAGCTAAAACCACCCACGTTGTAAAAGTCCTGTATATACGTATATAATTCATTGCTACGAACACAAGTAAAAAGTCCATAACGGAAACTCGTCCCGTTTTAGGTCTGCTGTGGTCTCTGGCAAGGG
**************************************************..(((((.((((....((((.(((...(((.........)))...)))))))))))))))).....************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553486 Makindu_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|
| ......................................................................................GTTCATTGCTACGAAC................................................................ | 16 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...............................................................................................................AAGTCCAAAAAGCAAACTCGT.................................. | 21 | 3 | 2 | 0.50 | 1 | 0 | 1 | 0 |
| ........................................................................................TCACTGCTACGGACACACGT.......................................................... | 20 | 3 | 15 | 0.07 | 1 | 0 | 0 | 1 |
Generated: 04/24/2015 at 10:35 AM