ID:

dsi_18192

 Coordinate:

3r:4348330-4348395 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4348233_4348329_-]; CDS [3r_4348233_4348329_-]; CDS [3r_4348396_4348498_-]; exon [3r_4348396_4348498_-]; intron [3r_4348330_4348395_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------##################################################
AACTTTTTGAGCAACGGCAAGAAGATTGTGGGGGTGGCTCTCAATTACATGTAACTCAGTGCCATTGTAATCTTGGGTCTGCATGGGTAATCCACGAATCCTTTCTTCCGTCGCAGGGACGTTGTGAAGGCCAAGAACGTTCCCGTGCCCAAGGAGCCGCTCGTCT
**************************************************..............((((.....((((.......((((.........)))).....))))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 M023
head
.......TGAGCAACGGCAAGAAGATTGTGGGGG.................................................................................................................................... 27 0 1 3.00 3 1 0 0 0 0 2 0 0 0
.......TGAGCAACGGCAAGAAGATTGTGGG...................................................................................................................................... 25 0 1 2.00 2 1 0 0 0 0 0 1 0 0
........................................................................................................................GTTGTGAAGGCCAAGAAC............................ 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0
AACTTTTTGAGCAACGGC.................................................................................................................................................... 18 0 1 2.00 2 0 1 0 0 1 0 0 0 0
.......................GATTGTGGGGGTGGCTCTCAATTA....................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................TTGTGAAGGCCAAGAACGTTCCCG..................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............AACGGCAAGAAGATTGTGGGGGTGGCT............................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................AAGAAGATTGTGGGGGTGG................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....TTTTGAGCAACGGCAAGAAGATTG.......................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......TGAGCAACGGCAAGAAGATTGTGGGGGT................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................AGAAGATTGTGGGGGTGGTT............................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................TGTGAAGGCCAAGAACGTTCCCGTG................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........AGCAGCGTCAAGAAGATTG.......................................................................................................................................... 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0
................GCAAGAAGATTGTGGGGGTGGCT............................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................GAGGTTGTGAAGGGCAAGA.............................. 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0
................GCAAGAAGATCGTGGGGGC................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 1 0 0
...............GGCAAGAAGATTGTAGGA..................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0
...............................................CATGTTACTCAGGGCCCT..................................................................................................... 18 3 19 0.16 3 0 0 0 0 2 0 0 0 1
.........................................................................................................................TTGTGAAGGCCAAAAA............................. 16 1 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TTGAAAAACTCGTTGCCGTTCTTCTAACACCCCCACCGAGAGTTAATGTACATTGAGTCACGGTAACATTAGAACCCAGACGTACCCATTAGGTGCTTAGGAAAGAAGGCAGCGTCCCTGCAACACTTCCGGTTCTTGCAAGGGCACGGGTTCCTCGGCGAGCAGA
**************************************************..............((((.....((((.......((((.........)))).....))))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
..........................................................................................................AGGCAGCATCCCTGTAACAGT....................................... 21 3 1 1.00 1 1 0 0 0
........CTCGATGGCGCTCTTCTAACA......................................................................................................................................... 21 3 2 0.50 1 0 1 0 0
..................................................................................................................................GGTTCTGGCAAGGGCACC.................. 18 2 6 0.33 2 0 0 2 0
.....................................................................................................................................TCTTGCGAGGGGATGGGTT.............. 19 3 14 0.14 2 0 2 0 0
...............................................................................ACGCACGCATTAGGTGC...................................................................... 17 2 9 0.11 1 1 0 0 0
....................................................................................................................................TTCTTGGTAGGGAACGGGTT.............. 20 3 11 0.09 1 0 1 0 0
...............................................................................ACGTACGGATTAGGTGC...................................................................... 17 2 13 0.08 1 1 0 0 0
.................ATTCTGCTAACACCCCCGCCG................................................................................................................................ 21 3 19 0.05 1 0 0 0 1
...............................................................................................................................TCCGGTTGTTGAATGGGCA.................... 19 3 20 0.05 1 0 1 0 0
............................ACCCCGACCTAGAGTTA......................................................................................................................... 17 2 20 0.05 1 0 0 0 1
.......................................................................................................AGAAGGCACAGTCCCT............................................... 16 2 20 0.05 1 1 0 0 0

Generated: 04/24/2015 at 02:08 AM