dsi_18184

CDS [3l_16538030_16538108_+]; exon [3l_16538030_16538108_+]; intron [3l_16537286_16538029_+]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AGCATCCGATCCCAATTTCAACTCTGTACTGCGTACAAACACCTCCGAATAGAAGCAACAAAATCATTACACTCCGAATTTCAAACCAACATCTGCCGCCTACAATTTACTAATCCCACACCATGACACAATCACTCAGAACCCCTTACTAAAGTCTTAACCCATTTTTCCAACCCACTGCGCAAAAAAAAAAAAAACAGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC ************************************************......................................................................................................................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	M025 embryo	M053 female body	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries
...................................................................................................................................................................................................................ATGGATCGCCAGTTCAAGC....................	19	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...ATCCGATCCCAATTTCAACTCTG................................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GAGCAGGACATGGATCGCCAGTT.........................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGTTCAAACTGCCCAGCACGACCT.....	24	3	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................ATCGCCAGTTCAAGCTGCCCAGC............	23	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................CATGACACAATCACTCAGAACCCC.........................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................CAGGACATGGATCGCCAGTTCAAGCTGCC................	29	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TGGATTGTCAGTTGAAGCTGC.................	21	3	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................TCCGACTGCGCAAAAAAAAAAAAAAA....................................................	26	3	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................TCCTACCGGCTGCGCAAAAAAA............................................................	22	3	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0
..................................................................................AAACCAACATCTGCGGC.......................................................................................................................................................	17	1	8	0.13	1	0	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................................................................................................GAGCAGGACATAGAT.................................	15	1	19	0.05	1	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................AAAAAAAAAAAAACCGACGATCA...........................................	23	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................................................TACTGCGGAAAAAAAAAA.........................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................AAAAAAAAAAAAAACCGACGATCA...........................................	24	3	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0

TCGTAGGCTAGGGTTAAAGTTGAGACATGACGCATGTTTGTGGAGGCTTATCTTCGTTGTTTTAGTAATGTGAGGCTTAAAGTTTGGTTGTAGACGGCGGATGTTAAATGATTAGGGTGTGGTACTGTGTTAGTGAGTCTTGGGGAATGATTTCAGAATTGGGTAAAAAGGTTGGGTGACGCGTTTTTTTTTTTTTTGTCCGCTCGTCCTGTACCTAGCGGTCAAGTTCGACGGGTCGTGATGGAAGTAG ************************************************......................................................................................................................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries
.....................................................TCGTTGTTTTAGTGATTTGAGGCT.............................................................................................................................................................................	24	2	1	1.00	1	0	1	0	0	0	0
............................................................................................................................CTGTGTTAGTTTGTCTTGG...........................................................................................................	19	2	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................TTTTTTTTTTTTATCCGCTAGACCT........................................	25	3	2	0.50	1	0	0	1	0	0	0
.......CTAGGGTGAAAGTTG....................................................................................................................................................................................................................................	15	1	6	0.17	1	0	0	0	1	0	0
.....................................................TCGTTGTTTTAGTGAT.....................................................................................................................................................................................	16	1	16	0.13	2	2	0	0	0	0	0
......................................................................................................................................................................................................................CTAGCGGTCAAGTTG.....................	15	1	8	0.13	1	1	0	0	0	0	0
...................................................................ATGTGAGCCTTAAGGTT......................................................................................................................................................................	17	2	16	0.13	2	0	0	2	0	0	0
............................................TGCTTATCTTCGCTGTT.............................................................................................................................................................................................	17	2	20	0.10	2	0	0	0	2	0	0
................................................................................................................................................................GGGTACAAAGGTTTGCTGA.......................................................................	19	3	13	0.08	1	0	0	0	0	1	0
..TGAGGCTAGGGTTAACGTTGA...................................................................................................................................................................................................................................	21	3	14	0.07	1	0	0	0	1	0	0
...................................................................................................................................AGTGAGTCTTGAAGAAT......................................................................................................	17	2	15	0.07	1	0	0	0	0	0	1
......................................................................................................................................................................................................................CTAGCGATCAGGTTCG....................	16	2	20	0.05	1	1	0	0	0	0	0
.....................................................TTGTTGTTTTAGTAAT.....................................................................................................................................................................................	16	1	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................TTTTTATTTGTCTTGTCCGCT..............................................	21	3	20	0.05	1	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:16537830-16538079 +	dsi_18184	AGCATCCGATCCCA--ATTTCAA--CTCTGTACTGCGTAC-------------------------AA--ACAC--CT-----CCGAAT--AGAAGCAAC------A-AAATCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGC------------------------------------------------CTACAATTT---ACTAATCCC-ACACCAT-GA-------------------------------------C-ACAATCACTCAGAACCCCTTACTAAAGTCTTAACCCATTTTTC---------------------------------CAACCC--A--CTGCGCAA-------AAAA------------------------------AAAAAAAACAGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC
droSec2	scaffold_0:9016669-9016917 +		AGCATCCGATCCTA--ATTTAAA--CTCCGTACTGCGTAC-------------------------AA--ACAC--CT-----CCGAAT--AGAAGCAAC------AAAAACCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGC------------------------------------------------CTACAATTT---ACTAATCCC-ACACCAT-GA-------------------------------------C-ACAATCACTCAGAACCCCTTACTAAAGTCTTAACCCATTGTTC---------------------------------CAACCC--A--CTGCGCAA-------AA--------------------------------AAAAAAAACAGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC
dm3	chr3L:16955242-16955484 +		AGCATCCGATCCCA--ATTTAAA--CTCTGTACTGCGTAC-------------------------AA--ACAC--CT-----CCGAAT--AGAAGCAAC------AAAAATCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGC------------------------------------------------CTACAATTT---ACTAATCCC-ACACCAT-GA-------------------------------------C-ACAATCACTCAAAACCCCTTACTAAAGTCTTAACCCATTGTTC---------------------------------CAACCC--A--CTGCGCA---------------------------------------------AAAAACAGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC
droEre2	scaffold_4784:16887395-16887643 -		AGCATCCGAACCCA--ATATAAA--CTCCGTACTGTGTAC-------------------------A---ACAC--CT-----CCGAAT--AGAAGCAAC------AATAATCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGC------------------------------------------------CTACAATTT---ACTAATCCC-AAACCAT-GA-------------------------------------C-ACAACCATTCA-AACCCCTTACTAAAGTTTTAACCCATTGTTC---------------------------------AAACCC--A--CTGCGCAA-------AAAA------------------------------AAAATAAACAGGTGAGCAGGACATGGACCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC
droYak3	3L:17119893-17120140 -		AGCATCCAAACCCA--ATATAAA--CTTTGTACTGTGTAC-------------------------AAA-ACAC--CT-----CCGAAT--AGAAGCAAC------AAAAATCATTACACTCCGAATTTCAAA-CCA--ACATCCGCCGC------------------------------------------------CTACAATTT---ACTAATCCC-ACACCAT-GA-------------------------------------C-ACAATCACCCAGAACCCCTTACTAAAGATTAAACCCATTGTTC---------------------------------C---CC--A---TGCGCAA-------AAAA------------------------------AATATAAACAGGTGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC
droEug1	scf7180000409711:383329-383573 -		AGCATCCAAGCCCA--ATTTCAG--CTC--TACTGTGTAT-------------------------GA--ACAC--CC-----CCCAAT--AGAAGCAAC------AAAAATCATTACACTCCGAATTTCAAA-ACA--ACATTTGCCGC------------------------------------------------CTACAATTT---ACTAACCGC-CCACCAT-GA-------------------------------------C-ACCACCATTCAGAACCCCTTACTAAAGTCTTAACCCATTTTTC---------------------------------CAACCC--T--ATG--CAA-------TA--------------------------------AAATAAAACAGGTGAGCAGGACATGGAGCGTCAGTTCAAACTGCCCAGCACCACCTTCATC
droBia1	scf7180000302428:3156904-3157147 -		AGCATCCGAACCCG--ATTTAAA--CTCTGTACTGTGTCC-------------------------GA--ACAC--C------CCGAAT--AGAAGAAAC------A-AAGTCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGC------------------------------------------------CTACACTTT---ACTAACCCC-CCATAAT-GA-------------------------------------C-ACAACCATTAAGAGCCCCTTACTAAAGTCTTGACCCATTGTTC---------------------------------CCACCC--A--ATGCACA------------------------------------------AAAAAAAACAGGCGAGCAGGACATGGAGCGCCAGTTCAAGCTGCCGAGCACCACCTTCATC
droTak1	scf7180000415352:406628-406865 -		AGCATCCGAACCCA--AT-----------GTACTATGTAC-------------------------AAAGACAC--CT-----CCGAAT--AGAAGAAAC------AAAAATCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGC------------------------------------------------CTACAGTTT---ACTAACTCC-CCATTAT-AC-------------------------------------C-ACCGCCATTAAGAACCCCTTACTAAAGTCTTGAC------TTC---------------------------------CCACCCTCT--CTGCACAA-------TA--------------------------------AATAAATACAGGCGAGCAGGACATGGAGCGCCAGTTCAAGCTTCCCAGCACCACCTTCATC
droEle1	scf7180000491255:3390800-3391046 +		AGCATCCGAACCCA--TTTGAAA--CTGTGTTCTCTGTAC-------------------------GA--ACAT--CC-----CCGAAT--AGAAGCAAC------CAAAATCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGC------------------------------------------------CTACAGTTT---ACTAACCTCAACACTTT-GA-------------------------------------C-CCAACCACTCAGTATCCCTTACTAAAGTCTTAACCCATTGTTT---------------------------------CAAACC--A--AT-CGCAT-----------------------------------------AAAAAAAACAGGCGAGCAGGACATGGAGCGGCAGTTCAAGTTGCCCAGCACCACCTTCATT
droRho1	scf7180000779902:115932-116183 -		AGCATCCGAACCTA--TTTTAAA--CTCTGTTCTCTGTAC-------------------------GA--ACACTCCTGAATCCCGAAA--TGAAGCAAC------AAAAATCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGC------------------------------------------------CTACAGTTT---ACTAACCCCAACACTTT-GA-------------------------------------C-AAAACCATTTTGAACCCCTTACTAAAGTCTTAACCCATTGTTC---------------------------------CAAACC--A--TTGC--A------------------------------------------ACAAAAAACAGGCGAGCAGGACATGGAACGCCAGTTCAAGTTGCCCAGCACCACCTTCATT
droFic1	scf7180000454113:3653537-3653787 -		AGCATCCGAACCCG--ATTTAAA--CAT--TTCTATGTAC-------------------------GA--ACAC--C------CCGAAT--AGAAGCAACAAAAAAAAAGAACATTACACTCCGAATTTCAAA-CCA--ACATTCGCTGC------------------------------------------------CTTTGATTT---ACTAACCCA-TCACTCT-GT-------------------------------------C-ACAACCATTA-AAACACCTTACTAAAGTCTTACCCACTTGTTA---------------------------------CCACCC--A--TTGT--AA-------TGAT------------------------------AAAAAAAACAGGCGAGCAGGACATGGAGCGCCAGTTCAAGCTGCCCAGCACCACCTTCATT
droKik1	scf7180000302486:793113-793308 +		AGAAACTA-------------------------------------------------------------------------------------------------AAAAATCATTACACTCCGAATTTCAAAACCA--ACATTTGCCGC------------------------------------------------CTACAGTTT---ACTAACCCT--CACTTGAAC-------------------------------------C-CCAACCTTACGGAACCCCTTACTAAAGTCTTAACCCATTCTTA---------------------------------CCCCCT-CAATTTG--TT-------------------------------------------ATGGAAACAGGCGAGCAGGATATGGAGCGTCAGTTCAAGCTGCCCAGCACCACCTTTATC
droAna3	scaffold_13337:13666819-13667055 -		AGCATGAAATA---------------------CT-TGTTC-------------------------GT--ACACTCC------CCGAACTAAGAAGCAAC------AAAAGTCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGC------------------------------------------------CTACAGTTTACTACTAACCCCCACACTTT-AG-------------------------------------T-CCAATCTCAAGGAGCACCTTACTAATGTATTGCC------TTC---------------------------------CCTCCC--A--TAAC-CAA--AAAAATA-T------------------------------AAAAAACACAGGCGAGCAGGACATGGAGCGTCAGTTCAAACTGCCCAGCACCACTTTCATC
droBip1	scf7180000395832:608245-608482 -		AGCATGAAA--TAA--T------------------TGTTC-------------------------GT--ACACTCC------CCGAAATAAAAAGCAAA---AC-AAAAGTCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGC------------------------------------------------CTACAGTTAACTACTAACCTTCACACTTA-AA-------------------------------------T-CCAATCTCGATGAGCTCCTTACTAATGTATTGCC------TTC---------------------------------CCTCCC--A--AAACCCAA---AAAATA--------------------------------AACAAATACAGGCGAGCAGGACATGGAGCGTCAGTTCAAGCTACCCAGCACCACCTTCATC
dp5	XR_group8:4777715-4778021 +		AGCATCTATC-TATCTGTCTGTACCCCCCGCCCTATATACACCCCCACTACAATATATATTGTACATACATAC---T-----TTATCT--AGAAGCAAC------A--AGTCATTACACTCCGAATTTCAAC-CCAAAACATTTGCCGC------------------------------------------------CTACAAATT---ACTAACCCC-CCCAAAT-AAACAACAAACAAAAATGTCAGACACCATACCACTCTCCTCCCACCCACAACGAGCACTTCACTAATATATGAATACCCAATCC---------------------------------CCACCC--A---------A-----------------------------------------AAAAAAAACAGGCGAACAGGATATGGAGCGTCAGTTCAAGCTGCCCAGCACCACCTTCATT
droPer2	scaffold_29:397735-397761 +		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGCTGCCATCGTCCACGCTGATT
droWil2	scf2_1100000004511:1294905-1295126 +		A-------------------------------------------------------------------------------------------------------------TCATTACACTCCGAATTTCAAA-CTA-AACATTTAATGC------------------------------------------------CTAATTTTAAAAACTAATCCC-ACACAAT-AA-------------------------------------C-TAAAAC---CAAAAATACTTACAAAAAA---AACATATTT-TATACGATCAACAATTTTGCTAATATCAACTTTTTTCTAAC--A--AAAAACAA---AA--A----------------------------CCACAAAAAAAAACAGGCGAACAGGATATGGAACGTCAGTTCAAATTGCCAAGCACCACATTTATA
droVir3	scaffold_13049:10208455-10208681 -	dvi_19314	--CATCTGTACTCAT-ATTTATA--TAGTGCACAATTTAC-------------------------AG------------------------------AC------CACAATCATTACACTCCGAATTTCAAA-T------------CGCTTACAAAAACTAATC-AGCATCATTTAAAGAA----AACCACATACCAAGCACAAAT---ACTAAT------------------------------------------------------------------------------AGT-------------TT---------------------------------C----C--T--TTACAAAA-------AAAAAAAACAC--------ACACCCAAATC----CGAAATAACAGGCGAGCAGGACATGGAGCGTCAGTTCAAGCTGCCCAGCACCACATTCATT
droMoj3	scaffold_6680:10588766-10588962 +		AATA-------------------------------------------------------------------------------------------------------CAATCATTACACTCCGAATTTCAAA-AA----------ACGCCTACAAAAACTAATC-AGCATCATTTAAAGAAACGT-A--TCAAATCAAGTTCAATT---ACTAAT------------------------------------------------------------------------------AGTTTTATCCT---------------------------------------------------CTATAAAA-------A--CAAATCCC--------CAACCCAAA-CCAAAAAAATAAACAGGTGAACAGGATATGGAACGTCAGTTCAAGCTGCCCAGCACCACCTTCATT
droGri2	scaffold_15110:9033936-9034142 +		AT----------------------------------------------------------------------------------------ACAG---AC------AACAATCATTACACTCCGAATTTCAAA-C-------------GCCTACAAAAACTAATCAAGCATCATTTATAGAA----ATCAATTTACCCCTATGATTT---ACTAAT------------------------------------------------------------------------------AGTTTTATTT----ATT----------------------------------------------TAC--AACA-----AACAACAACAAAAACAAAACAATCCACA-C----ATAAATAACAGGCGAGCAAGATATGGAGCGTCGTTTTAAGTTGCCCAGCACCACTTTCATT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGCATCCGATCCCA--ATTTCAA--CTCTGTACTGCGTAC-------------------------AA--ACAC--CT-----CCGAAT--AGAAGCAAC------A-AAATCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGC------------------------------------------------CTACAATTT---ACTAATCCC-ACACCAT-GA-------------------------------------C-ACAATCACTCAGAACCCCTTACTAAAGTCTTAACCCATTTTTC---------------------------------CAACCC--A--CTGCGCAA-------AAAA------------------------------AAAAAAAACAGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCGCCAGTTCAAGC....................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...ATCCGATCCCA--ATTTCAA--CTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGATCGCCAGTT.........................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCCAGTTCAAGCTGCCCAGC............	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CAT-GA-------------------------------------C-ACAATCACTCAGAACCCC...................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACATGGATCGCCAGTTCAAGCTGCC................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGCATCCGATCCTA--ATTTAAA--CTCCGTACTGCGTAC-------------------------AA--ACAC--CT-----CCGAAT--AGAAGCAAC------AAAAACCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGC------------------------------------------------CTACAATTT---ACTAATCCC-ACACCAT-GA-------------------------------------C-ACAATCACTCAGAACCCCTTACTAAAGTCTTAACCCATTGTTC---------------------------------CAACCC--A--CTGCGCAA-------AA--------------------------------AAAAAAAACAGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGATCGCCAGTTCAAG.....................	25	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGATCGCCAGTTCAAGC....................	21	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACTA........	20	1	1.00	1	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGATCGCCAGTT.........................	23	1	1.00	1	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGCCAGTTCAAGCTGCC................	27	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCGCCAGTTCAAGCTGCCCA..............	25	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGATCGCCAGTTCAAGCT...................	21	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGATCGCCAGTTCAAG.....................	21	1	1.00	1	0	0	1	0

dm3

AGCATCCGATCCCA--ATTTAAA--CTCTGTACTGCGTAC-------------------------AA--ACAC--CT-----CCGAAT--AGAAGCAAC------AAAAATCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGC------------------------------------------------CTACAATTT---ACTAATCCC-ACACCAT-GA-------------------------------------C-ACAATCACTCAAAACCCCTTACTAAAGTCTTAACCCATTGTTC---------------------------------CAACCC--A--CTGCGCA---------------------------------------------AAAAACAGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................ACCC--A--CTGCGCA---------------------------------------------AAAAACAG..................................................	20	1	41.00	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	7	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	2	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	2	1	0	0	0	0	0	0	1	1	0	0	0	2	3	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CCC--A--CTGCGCA---------------------------------------------AAAAACAG..................................................	19	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGCCAGTTCAAGCTGC.................	26	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGCCAGTTCA.......................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCAGTTCAAGCTGCCC...............	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACATGGATCGCCAGTTCA.......................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGCCAGTTC........................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................................................................................................................................................................................C---------------------------------CAACCC--A--CTGCGCA---------------------------------------------AAAAACA...................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGCCAGT..........................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TCTGTACTGCGTAC-------------------------AA--ACAC--CT-----CCGAA..........................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACATGGATCGCCAGTTCAAGCT...................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGATCGCCAGTTC........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGCATCCGAACCCA--ATATAAA--CTCCGTACTGTGTAC-------------------------A---ACAC--CT-----CCGAAT--AGAAGCAAC------AATAATCATTACACTCCGAATTTCAAA-CCA--ACATCTGCCGC------------------------------------------------CTACAATTT---ACTAATCCC-AAACCAT-GA-------------------------------------C-ACAACCATTCA-AACCCCTTACTAAAGTTTTAACCCATTGTTC---------------------------------AAACCC--A--CTGCGCAA-------AAAA------------------------------AAAATAAACAGGTGAGCAGGACATGGACCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGCTGCCCAGCACTACCTTC...	24	1	5.00	5	0	0	0	0	0	0	5
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACCGCCAGTTCAAGC....................	19	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGTGAGCAGGACATGGACCGCCA............................	26	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGCAGGACATGGACC................................	19	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCAC..........	18	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGACCGCCAGTTC........................	22	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGACATGGACCGCCA............................	19	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGCAGGACATGGACCGCCAGT..........................	25	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGACCGCCAGT..........................	22	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGACCGCCA............................	18	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCGCCAGTTCAAGCTGCCC...............	23	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAGGACATGGACCGCCA............................	22	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAGGACATGGACCGCCA............................	21	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACT.........	19	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTCAAGCTGCCCAGC............	19	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTTCAAGCTGCCCA..............	18	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACTACCTTCATC	28	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGCCAGTTCAAGCTGCCCA..............	22	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGCAGGACATGGACCGCCA............................	23	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGACCGCCAGTTCAAGCT...................	23	1	1.00	1	1	0	0	0	0	0	0

droYak3

AGCATCCAAACCCA--ATATAAA--CTTTGTACTGTGTAC-------------------------AAA-ACAC--CT-----CCGAAT--AGAAGCAAC------AAAAATCATTACACTCCGAATTTCAAA-CCA--ACATCCGCCGC------------------------------------------------CTACAATTT---ACTAATCCC-ACACCAT-GA-------------------------------------C-ACAATCACCCAGAACCCCTTACTAAAGATTAAACCCATTGTTC---------------------------------C---CC--A---TGCGCAA-------AAAA------------------------------AATATAAACAGGTGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGATCGCCAGTTCAAGCTGCCC...............	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCGCCAGTTCAAGCTGCCC...............	24	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGATCGC..............................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................GCAAC------AAAAATCATTACACTC........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGATCGCCAGTTCAAGCTGCC................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................AA-ACAC--CT-----CCGAAT--AGAAGCAAC------A.......................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGCTGCCCAGCACTACCT.....	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGCAGGACATGGATCGCC.............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGATCGCCAGTTCAAGCT...................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGACATGGATCGCC.............................	18	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AGCATCCAAGCCCA--ATTTCAG--CTC--TACTGTGTAT-------------------------GA--ACAC--CC-----CCCAAT--AGAAGCAAC------AAAAATCATTACACTCCGAATTTCAAA-ACA--ACATTTGCCGC------------------------------------------------CTACAATTT---ACTAACCGC-CCACCAT-GA-------------------------------------C-ACCACCATTCAGAACCCCTTACTAAAGTCTTAACCCATTTTTC---------------------------------CAACCC--T--ATG--CAA-------TA--------------------------------AAATAAAACAGGTGAGCAGGACATGGAGCGTCAGTTCAAACTGCCCAGCACCACCTTCATC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCATCCGAACCCG--ATTTAAA--CTCTGTACTGTGTCC-------------------------GA--ACAC--C------CCGAAT--AGAAGAAAC------A-AAGTCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGC------------------------------------------------CTACACTTT---ACTAACCCC-CCATAAT-GA-------------------------------------C-ACAACCATTAAGAGCCCCTTACTAAAGTCTTGACCCATTGTTC---------------------------------CCACCC--A--ATGCACA------------------------------------------AAAAAAAACAGGCGAGCAGGACATGGAGCGCCAGTTCAAGCTGCCGAGCACCACCTTCATC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGCATCCGAACCCA--AT-----------GTACTATGTAC-------------------------AAAGACAC--CT-----CCGAAT--AGAAGAAAC------AAAAATCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGC------------------------------------------------CTACAGTTT---ACTAACTCC-CCATTAT-AC-------------------------------------C-ACCGCCATTAAGAACCCCTTACTAAAGTCTTGAC------TTC---------------------------------CCACCCTCT--CTGCACAA-------TA--------------------------------AATAAATACAGGCGAGCAGGACATGGAGCGCCAGTTCAAGCTTCCCAGCACCACCTTCATC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGCATCCGAACCCA--TTTGAAA--CTGTGTTCTCTGTAC-------------------------GA--ACAT--CC-----CCGAAT--AGAAGCAAC------CAAAATCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGC------------------------------------------------CTACAGTTT---ACTAACCTCAACACTTT-GA-------------------------------------C-CCAACCACTCAGTATCCCTTACTAAAGTCTTAACCCATTGTTT---------------------------------CAAACC--A--AT-CGCAT-----------------------------------------AAAAAAAACAGGCGAGCAGGACATGGAGCGGCAGTTCAAGTTGCCCAGCACCACCTTCATT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCATCCGAACCTA--TTTTAAA--CTCTGTTCTCTGTAC-------------------------GA--ACACTCCTGAATCCCGAAA--TGAAGCAAC------AAAAATCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGC------------------------------------------------CTACAGTTT---ACTAACCCCAACACTTT-GA-------------------------------------C-AAAACCATTTTGAACCCCTTACTAAAGTCTTAACCCATTGTTC---------------------------------CAAACC--A--TTGC--A------------------------------------------ACAAAAAACAGGCGAGCAGGACATGGAACGCCAGTTCAAGTTGCCCAGCACCACCTTCATT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGCATCCGAACCCG--ATTTAAA--CAT--TTCTATGTAC-------------------------GA--ACAC--C------CCGAAT--AGAAGCAACAAAAAAAAAGAACATTACACTCCGAATTTCAAA-CCA--ACATTCGCTGC------------------------------------------------CTTTGATTT---ACTAACCCA-TCACTCT-GT-------------------------------------C-ACAACCATTA-AAACACCTTACTAAAGTCTTACCCACTTGTTA---------------------------------CCACCC--A--TTGT--AA-------TGAT------------------------------AAAAAAAACAGGCGAGCAGGACATGGAGCGCCAGTTCAAGCTGCCCAGCACCACCTTCATT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGAAACTA-------------------------------------------------------------------------------------------------AAAAATCATTACACTCCGAATTTCAAAACCA--ACATTTGCCGC------------------------------------------------CTACAGTTT---ACTAACCCT--CACTTGAAC-------------------------------------C-CCAACCTTACGGAACCCCTTACTAAAGTCTTAACCCATTCTTA---------------------------------CCCCCT-CAATTTG--TT-------------------------------------------ATGGAAACAGGCGAGCAGGATATGGAGCGTCAGTTCAAGCTGCCCAGCACCACCTTTATC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGCATGAAATA---------------------CT-TGTTC-------------------------GT--ACACTCC------CCGAACTAAGAAGCAAC------AAAAGTCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGC------------------------------------------------CTACAGTTTACTACTAACCCCCACACTTT-AG-------------------------------------T-CCAATCTCAAGGAGCACCTTACTAATGTATTGCC------TTC---------------------------------CCTCCC--A--TAAC-CAA--AAAAATA-T------------------------------AAAAAACACAGGCGAGCAGGACATGGAGCGTCAGTTCAAACTGCCCAGCACCACTTTCATC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGTCA............................	20	1	6.00	6	1	0	0	0	5	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGC................................	19	1	5.00	5	3	1	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCGTCAGTTCAAACTGCCCAGCACC.........	28	1	4.00	4	0	0	0	0	0	4
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGCGTCA............................	23	1	3.00	3	2	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCAGTTCAAACTGCCCAGCACC.........	27	1	3.00	3	3	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGTC.............................	19	1	3.00	3	1	0	0	0	2	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAACTGCCCAGC............	26	1	3.00	3	0	0	0	0	1	2
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAACTGCCCAGCACCA........	20	1	3.00	3	0	3	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAACTGCCC...............	23	1	2.00	2	1	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACATGGAGCGTCAGTTCA.......................	22	1	2.00	2	0	0	0	0	0	2
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGACATGGAGCGTCA............................	19	1	2.00	2	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGAGCGTCAGTTCAAA.....................	20	1	2.00	2	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTCAGTTCAAACTGCCC...............	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAACTGCCCAGCAC..........	28	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGAGCGTCAGTTCAAA.....................	25	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACATGGAGCGTCAGTTCAAAC....................	24	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGCCCAGCACCACTTC....	20	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTCAGTTCAAACTGCCCAGCACCAC.......	28	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGAGCGTCA............................	18	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCAAACTGCC................	27	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAG.................................	18	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGCAGGACATGGAGCGT..............................	20	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGAGCGTCAGTTCA.......................	18	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACATGGAGCGTCAGT..........................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCCCAGCACCACTTTCAT.	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCGTCAGTTCAAAC....................	19	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCAA......................	21	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGTCAGTT.........................	23	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGAGCGTCAGTTCAAAC....................	21	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGAGCGTCAGTTCAAAC....................	26	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCGTCAGTTCAAACTGCCCAGC............	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGCGT..............................	21	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCAAACTGCCC...............	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCGTCAGTTCAAACTGCCCA..............	25	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCAGGACATGGAGCGTCA............................	21	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGCGTCAGTTCAAACTGCCC...............	27	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGAGCGTCAGTTC........................	22	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAACTGCCCAGCACCAC.......	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGAGCGTCAGT..........................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGCGTC.............................	22	1	1.00	1	1	0	0	0	0	0

droBip1

AGCATGAAA--TAA--T------------------TGTTC-------------------------GT--ACACTCC------CCGAAATAAAAAGCAAA---AC-AAAAGTCATTACACTCCGAATTTCAAA-CCA--ACATTTGCCGC------------------------------------------------CTACAGTTAACTACTAACCTTCACACTTA-AA-------------------------------------T-CCAATCTCGATGAGCTCCTTACTAATGTATTGCC------TTC---------------------------------CCTCCC--A--AAACCCAA---AAAATA--------------------------------AACAAATACAGGCGAGCAGGACATGGAGCGTCAGTTCAAGCTACCCAGCACCACCTTCATC	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGCATCTATC-TATCTGTCTGTACCCCCCGCCCTATATACACCCCCACTACAATATATATTGTACATACATAC---T-----TTATCT--AGAAGCAAC------A--AGTCATTACACTCCGAATTTCAAC-CCAAAACATTTGCCGC------------------------------------------------CTACAAATT---ACTAACCCC-CCCAAAT-AAACAACAAACAAAAATGTCAGACACCATACCACTCTCCTCCCACCCACAACGAGCACTTCACTAATATATGAATACCCAATCC---------------------------------CCACCC--A---------A-----------------------------------------AAAAAAAACAGGCGAACAGGATATGGAGCGTCAGTTCAAGCTGCCCAGCACCACCTTCATT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAGCGTCA............................	20	1	3.00	3	0	2	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATATGGAGCGTCAGTTCA.......................	21	1	3.00	3	0	1	0	0	0	0	0	0	2	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAGCGTCAGTT.........................	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAAGCTGCCCAGCAC..........	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAGC....................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGGAGCGTCAGTTCAA......................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAACAGGATATGGAGC................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATGGAGCGTCAGTTCAAGCTGC.................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAGCGTCAGTTC........................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACCA........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAGCGT..............................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATGGAGCGTCAGTTC........................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCGTCAGTTCAAGCTGCCCAGCAC..........	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAGCGTCA............................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGGAGCGTCAGTTC........................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATATGGAGCGTCAGTTCAAGC....................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATGGAGCGTCAGTTCA.......................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCGTCAGTTCAAGCT...................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACCAC.......	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATATGGAGCGTCAGTTCAAGCT...................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAACAGGATATGGAGCGTC.............................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGCTGCCATCGTCCACGCTGATT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

A-------------------------------------------------------------------------------------------------------------TCATTACACTCCGAATTTCAAA-CTA-AACATTTAATGC------------------------------------------------CTAATTTTAAAAACTAATCCC-ACACAAT-AA-------------------------------------C-TAAAAC---CAAAAATACTTACAAAAAA---AACATATTT-TATACGATCAACAATTTTGCTAATATCAACTTTTTTCTAAC--A--AAAAACAA---AA--A----------------------------CCACAAAAAAAAACAGGCGAACAGGATATGGAACGTCAGTTCAAATTGCCAAGCACCACATTTATA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAACGTCAGTT.........................	23	1	16.00	16	0	0	5	11	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAACGTCA............................	20	1	11.00	11	0	0	9	2	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAACGTCAGT..........................	22	1	8.00	8	0	0	3	5	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAACGTCAGTTCA.......................	24	1	4.00	4	3	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATATGGAACGTCAGTT.........................	20	1	3.00	3	0	0	1	2	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATATGGAACGTCAGTT.........................	19	1	3.00	3	0	0	1	2	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAACAGGATATGGAAC................................	19	1	3.00	3	3	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAACGT..............................	18	1	2.00	2	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAACGTC.............................	19	1	2.00	2	0	0	1	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCGAACAGGATATGGAACGT..............................	20	1	2.00	2	0	0	2	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAACGTCA............................	19	1	2.00	2	0	0	2	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTGCCAAGCACCAC.......	18	1	2.00	2	0	0	0	2	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATATGGAACGTCAGTTC........................	22	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATATGGAACGTCAGT..........................	19	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATATGGAACGTCAGTTCAAATTGCC................	29	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCGAACAGGATATGGAAC................................	18	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAACGTCAGTTC........................	23	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATATGGAACGTCAGTTCA.......................	21	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCAAGCACCACATTTATA	21	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTCAAATTGCCAAGCACCAC.......	23	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGGAACGTCAGTTCAAATT...................	23	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATATGGAACGTCAGTTCA.......................	23	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATATGGAACGTCAGTTCAAATTGCC................	28	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATATGGAACGTCAGTT.........................	21	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGGAACGTCAGTTCAA......................	20	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAACGTCAGTT.........................	22	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCGAACAGGATATGGAACG...............................	19	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATATGGAACGTCAGTTCAAAT....................	26	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................ATACGATCAACAATTTTGCTAAT....................................................................................................................................	23	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATATGGAACGTCAGTTCA.......................	22	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGGAACGTCAGTTCAAAT....................	22	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAACGTCAGTTCA.......................	25	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAACAGGATATGGAACGTC.............................	22	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATATGGAACGTCAGTTCAAA.....................	24	1	1.00	1	1	0	0	0	0

droVir3

--CATCTGTACTCAT-ATTTATA--TAGTGCACAATTTAC-------------------------AG------------------------------AC------CACAATCATTACACTCCGAATTTCAAA-T------------CGCTTACAAAAACTAATC-AGCATCATTTAAAGAA----AACCACATACCAAGCACAAAT---ACTAAT------------------------------------------------------------------------------AGT-------------TT---------------------------------C----C--T--TTACAAAA-------AAAAAAAACAC--------ACACCCAAATC----CGAAATAACAGGCGAGCAGGACATGGAGCGTCAGTTCAAGCTGCCCAGCACCACATTCATT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGTCA............................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCA.......................	20	1	4.00	4	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGTC.............................	19	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGCGTCA............................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAGCT...................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGAGCGTCA............................	18	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGCGTCAGTTCA.......................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGT..............................	18	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGCGTC.............................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCCAGCACCACATTCATT	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACCACATTCA..	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTCAAGCTGCCCAGCACC.........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCAAGC....................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCAAGCTGC.................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGACATGGAGCGTCA............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGCGTCAG...........................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCCAGCACCACATTCA..	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACCACA......	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGCTGCCCAGCACCACATT....	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGTCAGTTCA.......................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTC........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCAGGACATGGAGC................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAGCTGCCCAGCA...........	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGAGCAGGACATGGA..................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................ACCCAAATC----CGAAATAACAG..................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGCAGGACATGGAGCGTCA............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAGCTGCC................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGGACATGGAGCGTCAGTT.........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGAGCGTCAGTT.........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGAGCGTCAGTTCA.......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGCGTCAGTTCAAGCT...................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGCGTCAGTTCAAGCTGCCCA..............	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGTCAGTTCAAGC....................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACATGGAGCGTCAGTTCA.......................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTCAAGCTGCCCAGCACCACATT....	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAAGCTGCCCAGCACCACATT....	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTT.........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTCAAGCTGCCCAGCAC..........	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCGTCAGTTCAAGCTGCCCAGCA...........	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTCAGTTCAAGCTGCC................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACATGGAGCGTCAGTTCAA......................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ACACCCAAATC----CGAAATAACAG..................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCTGCCCAGCACCACATTCA..	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCGAGCAGGACATGGAG.................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTGCCCAGCACCACATT....	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGTCAGTTCAAGCT...................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGCCCAGCACCACATTCA..	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCCAGCACCACATTCA..	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AATA-------------------------------------------------------------------------------------------------------CAATCATTACACTCCGAATTTCAAA-AA----------ACGCCTACAAAAACTAATC-AGCATCATTTAAAGAAACGT-A--TCAAATCAAGTTCAATT---ACTAAT------------------------------------------------------------------------------AGTTTTATCCT---------------------------------------------------CTATAAAA-------A--CAAATCCC--------CAACCCAAA-CCAAAAAAATAAACAGGTGAACAGGATATGGAACGTCAGTTCAAGCTGCCCAGCACCACCTTCATT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTCAAGCTGCCCAGCAC..........	20	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAACAGGATATGGAA.................................	18	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGATATGGAACGTCA............................	20	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATGGAACGTCAGTTCAAGCT...................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATATGGAACGTCAGT..........................	20	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAACGTCAGTTCAAGCTG..................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAACAGGATATGGAACGTCAGT..........................	25	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATATGGAACGTCAGT..........................	21	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAGGATATGGAACGT..............................	19	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAACAGGATATGGAACGT..............................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATATGGAACGTCAGTT.........................	20	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAACGTCAGTTCAAGCTGCCC...............	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATGGAACGTCAGTTCA.......................	20	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACGTCAGTTCAAGCTGCCC...............	25	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACGTCAGTTCAAGC....................	20	1	1.00	1	1	0	0	0	0	0

droGri2

AT----------------------------------------------------------------------------------------ACAG---AC------AACAATCATTACACTCCGAATTTCAAA-C-------------GCCTACAAAAACTAATCAAGCATCATTTATAGAA----ATCAATTTACCCCTATGATTT---ACTAAT------------------------------------------------------------------------------AGTTTTATTT----ATT----------------------------------------------TAC--AACA-----AACAACAACAAAAACAAAACAATCCACA-C----ATAAATAACAGGCGAGCAAGATATGGAGCGTCGTTTTAAGTTGCCCAGCACCACTTTCATT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGATATGGAGCGTCGTTTTA.......................	23	1	1.00	1	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCGTCGTTTTAAGTTGCCCAGCACC.........	28	1	1.00	1	0	1

dsi_18184

3l:16537880-16538029 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

0.0	0.0	0.0