ID:

dsi_18170

 Coordinate:

3l:15689430-15689579 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-0.1 0.0

Flybase annnotation

CDS [3l_15689580_15689666_+]; exon [3l_15689580_15689666_+]; intron [3l_15689153_15689579_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCTCGCGCTCTCTTTCGCTCTTTACACCCCGCTCTGTCGTATATACATACATATATATGTTTTTTCGATCCGTTGAACAAAAATATGAATTCCCAACAAACAACTACACCACAAAACTGAACAAGAAAAACCAAGACCCGAATCAAAATCGAAAAACAACAAATCGCAAAACCACATCTTGTTTCATTTCACATTCGCAGACAACGAAAAATTCACTATCTGAACTTGAGAAACGCGAAAGAAGAGCTAT
*******************************************************************....((((..................)))).........................................**************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 GSM343915
embryo
 M023
head
 M025
embryo
 O002
Head
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
..........................................................................................................................................................................................................................TCTGAACTTGAGAAACGCGAAAG......... 23 0 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................ACAAAACTGAACAAGAAAAACCAAGACC................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0
.............AACGCTCGTTACACCCCGCTCT....................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................CACTATCTGAACTTGAGAA.................. 19 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................ACTTGAGAAACGCGAAAGAA....... 20 0 1 1.00 1 0 0 0 0 1 0 0
...................................................................ATCCGTTGAACAAAAATATG................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
...................CTTGACACCCCGCTCTGTTGT.................................................................................................................................................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0
...............................................................TTAGATACGTTGAACACAAA....................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 1
...............................................................TTAGATCCGTAGAACAAAAAA...................................................................................................................................................................... 21 3 9 0.11 1 0 0 0 0 0 1 0
.........................................................................................................ACAGCACAAAACTAAACAA.............................................................................................................................. 19 2 20 0.10 2 0 0 0 0 0 2 0
.............................................................................................................................................AACAGAATCGAAAAACAAC.......................................................................................... 19 2 19 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

CGAGCGCGAGAGAAAGCGAGAAATGTGGGGCGAGACAGCATATATGTATGTATATATACAAAAAAGCTAGGCAACTTGTTTTTATACTTAAGGGTTGTTTGTTGATGTGGTGTTTTGACTTGTTCTTTTTGGTTCTGGGCTTAGTTTTAGCTTTTTGTTGTTTAGCGTTTTGGTGTAGAACAAAGTAAAGTGTAAGCGTCTGTTGCTTTTTAAGTGATAGACTTGAACTCTTTGCGCTTTCTTCTCGATA
****************************************************************************************************************....((((..................)))).........................................******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
.............................................................................................................................................................................................................CTTTTTAAGTGATAGTCT........................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................AGTTAGTTGATGTAGTGTTTTG..................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................GTTGATGTGGTGCTTTGG.................................................................................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................TGTTGTTGATGTGGTGTTTTCA.................................................................................................................................... 22 3 3 0.33 1 0 0 0 1 0 0 0 0 0
...................................................................................................GGTTGATGTGGTGTTTTGG.................................................................................................................................... 19 2 6 0.33 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TAGTCTTGAACTCTTT................. 16 1 5 0.20 1 0 0 0 0 1 0 0 0 0
.............................................................AAAAGCTAGGTAACGTGATTT........................................................................................................................................................................ 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GGGTGTAGAACAATGTAA.............................................................. 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0
...................................................................................................GGTTGATGTGGTATTTTG..................................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0
..............AGCGAGAAATGTTGG............................................................................................................................................................................................................................. 15 1 6 0.17 1 0 0 0 0 0 1 0 0 0
.....................................................................................................TTGATGTGGTGCTTT...................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................CAAAGTCAAGTGTTAGGGTC.................................................. 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0
..................................................................................................TGGTTGATGTGGTGCTTTGG.................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0
...............................................................AAGCTAGGACACTTGTT.......................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 1 0 0 0 0
..................................................................CTAGGCTAACTGTTTTTATA.................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 1 0 0
.................................................................................................TTGGTTGATGTGGTGCTGTG..................................................................................................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 1 0
..........................................................................................AGGGTTGTTTGTTGG................................................................................................................................................. 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TTTGGGTTATGGTGTAGAA...................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0
...........................................................AAAAAAGCTAGGCGA................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 06:03 PM