ID:

dsi_18133

 Coordinate:

2l:5008563-5008712 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTCCGCTCCGTCGAGGGCTCCGAGCAGCAATCGCAACACACCTACGAGAGGTAAGGTGTCCAGTGGGCCAGTTCCGAGGGCGGAACGAAACAATTCGTGGGTGCCGCTTGAGCTTAGGTCCTGGAAGGGTTCCAGTGTTAGTTGGGCGGAAACAATTAAATTCTATATATTTTATATGGTTTTAGTTGGTATTCTTAGTTCATTTGACTAGTTTTAGCAATGATCATTTGGAAACTGTAGATAATTTGTG
**************************************************.......((((((..(((((((((.(((((((..(((((....)))))...)))).))))))))..))))((((((...))))))......))))))((((.((((((((..(((((((...))))))).))))))))...)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 M023
head
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
.....CTCCGTCGAGGGCTCCGAGCAGCAAT........................................................................................................................................................................................................................... 26 0 1 4.00 4 3 1 0 0 0 0 0 0 0
.........GTCGAGGGCTCCGAGCAGCAATC.......................................................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
CTCCGCTCCGTCGAGGGCT....................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......TCCGTCGAGGGCTCCGAGCAGCAAT........................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..CCGCTCCGTCGAGGGCTCCGAGCAGCAAT........................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.TCCGCTCCGTCGAGGGCTCCGAGCAGCAA............................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.....CTCCGTCGAGGGCTCCGAGC................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................AGCAATCGCAACACACCTACGAGAGA....................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0
....GCTCCGTCGAGGGCTCCGAGCAGCAAT........................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GATCATTTGGAAACTGTA........... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
....GCTCCGTCGAGGGCTCCGAGCAGCAAG........................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................GAAGGGTTCTAGTGTGAG............................................................................................................. 18 2 3 0.33 1 0 0 0 0 0 0 0 1 0
....................................................AATGTGTCCAGTGGGCCA.................................................................................................................................................................................... 18 1 4 0.25 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................CAATGATCATATGGCAAC............... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0
............................................................................AGGGCGGATCGAAAC............................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 0 1
............................................................................................ATTCGTGGGTGCCGATTTGG.......................................................................................................................................... 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0
........................................................................TCCGAGGGCAGAACGAAC................................................................................................................................................................ 18 2 6 0.17 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................GAAGGGTTCGAGTGTGA.............................................................................................................. 17 2 14 0.14 2 0 0 1 0 0 0 0 1 0
.......................................................................................................................CCTGGAAGGGTGCCA.................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 1 0 0
...................................................................................................................AAGTCCTGGAAGGGT........................................................................................................................ 15 1 9 0.11 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................TAGAAGGGTTCAAGCGTTA.............................................................................................................. 19 3 12 0.08 1 0 0 1 0 0 0 0 0 0
..................................................................................................................TAGGTCGAGGAAGCGTTCCAG................................................................................................................... 21 3 14 0.07 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................CAATGATCATATGGCAACG.............. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
..................................................................................................................TAGGTCCTGGAAGGCC........................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0
.............................................GAGAGGTACGGTGACCAAT.......................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0
........CGTCGGGGGCTCCGGG.................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0
........CGTCGAGGGCCCCGGG.................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................ATATATTTTATATGGAT..................................................................... 17 1 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GAGGCGAGGCAGCTCCCGAGGCTCGTCGTTAGCGTTGTGTGGATGCTCTCCATTCCACAGGTCACCCGGTCAAGGCTCCCGCCTTGCTTTGTTAAGCACCCACGGCGAACTCGAATCCAGGACCTTCCCAAGGTCACAATCAACCCGCCTTTGTTAATTTAAGATATATAAAATATACCAAAATCAACCATAAGAATCAAGTAAACTGATCAAAATCGTTACTAGTAAACCTTTGACATCTATTAAACAC
**************************************************.......((((((..(((((((((.(((((((..(((((....)))))...)))).))))))))..))))((((((...))))))......))))))((((.((((((((..(((((((...))))))).))))))))...)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
..................................................CATTCCACGGCTCACCCAGT.................................................................................................................................................................................... 20 3 1 8.00 8 3 3 2 0 0 0 0 0 0 0
...................................................ATTCCACGGCTCACCCAGTCA.................................................................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAAGTACACTGGTCAAAGTC................................. 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAAGTACACTTGTCAAAATC................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................CAAGGCTCCCCCCTAGCT.................................................................................................................................................................. 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
.......................................................................AAGGCTCCCGTCTTGCT.................................................................................................................................................................. 17 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
...................................................ATTCCACGGCTCACCCAGT.................................................................................................................................................................................... 19 3 11 0.45 5 0 1 1 2 0 0 0 0 1 0
..................................................CATTCCACGGCTCACCCAG..................................................................................................................................................................................... 19 3 14 0.43 6 0 2 1 0 0 0 3 0 0 0
......................................................................................................................AGGTCCTTCCCAAGGTCTCA................................................................................................................ 20 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
.............................................................................CCCGCCATGCTTTGTT............................................................................................................................................................. 16 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................AGCTTGCCAAGGTAACAATC............................................................................................................. 20 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................TCAAGTACACTGGTCAAAGT.................................. 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................AGTCGAATCCAGGAC............................................................................................................................... 15 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0
..................................................CATTCCACGGCTCACCC....................................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................CAAGTACACTTGTCAAAATC................................. 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAAGTACACTGGTCAAAG................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAGTACACTGGTCAAAGTC................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...........................................AGCTCCCCATTCCACA............................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:5008513-5008762 + dsi_18133 CTCCGCTCCGTCGAGGGCTCCGAGCAGCAATCGCAACACACCTACGAGAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAACA-ATTCGTGGGTGCCGCTTGAGCTTAGGT-----CC-----------------------------------------------------------------------------TGGAAGGGTT------C--CAGTGTTAG--TTGGGCGGAAA-C-A-ATT-AAATTCTATA----------------------------------------TATTTTATATGGTT----TTAGTTGGTATTCT------------------------------------------TA---------G-TTCATTT------GACT-A-----------GTTT----------T------------A-----------G-----------CAAT--G----------AT--CA--TTTGGAAACTGTAGATAAT----------------------------------------TTGT---G
droSec2 scaffold_5:3284898-3285141 + CTCCGCTCCGTCGAGGGCTCCGAGCAGCAATCGCAACACACCTACGAGAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAACA-ATTCGTGGGTGCCGCTTGAGCTTAGGG-----CC-----------------------------------------------------------------------------TGGAAG-ATT------C--CATTGTTAG--TTGGGCGGAAAAC-A-ATT-AAATTCTATA----------------------------------------TATTTTATATGGTT----TTAGTTGGTATTCT------------------------------------------TA---------G-TTCATAT------GACT-A-----------GTTT----------T------------A-----------G-----------CAAT--G----------AT--CA--TTTGGAAACTGTAGATAA-------------------------------------------------
dm3 chr2L:5203693-5203943 + CTCCGCTCCGTCGAGGGCTCCGAGCAGCAATCGCAACACACGTACGAGAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAACG-ATTCGTGGGTGCCGCTTGAGCTTAGGT-----CC-----------------------------------------------------------------------------TGGAGAGGTT------C--CAGTGTTAG--TTGGGCGGAAAAC-A-ATT-AAATTCTATA----------------------------------------TATTTTATATGGTT----TCAGTTGGTATTCT------------------------------------------TA---------G-TTCATTT------GACT-A-----------GCTT----------T------------A-----------G-----------CAAT--G----------AT--CA--CTTGGAAACTGTAGATAAT----------------------------------------TTGT---G
droEre2 scaffold_4929:5281694-5281939 + CTCCGCTCCGTCGAGGGCTCCGAGGAGCAATCCCAACACACCTACGAGAGGTAAGGTGTCCAG--TGCGCCGGTTCC-GAGGGCGGAACGAAATG-ATTCGTGGGTGCCGCTTGAGCTTAGGG-----CC-----------------------------------------------------------------------------TGGAAGGGTC------T--CAGAGTTAG--TTGGGCGGAAAAC-A-ATT-AAATTCTGTA------------------------------------------TGTTATATGGTT----TTAGTTGGTATTCT------------------------------------------TA---------G-TTCATTT------GACT-A-----------GTTT----------T------------AT----------G-----------CAAT--G----------AT--CG--TTGGGAAACTGTAGATAAT----------------------------------------T-------
droYak3 2L:10323679-10323930 - CTCCGCTCCGTCGAGGGCTCCGAGGAGCAGTCCCAACACACCTACGAGAGGTAAGGTGTCCAG--TGCGCCAGTTCC-GAGGGCGGAACGAAATA-ATTCGTGGGTGCCGCTTGAGCTTAGGG-----CC-----------------------------------------------------------------------------TGGAAGGGTA------T--CAGCGTTAG--TTGGGCGGAAAAC-C-ATT-AAATCCTATA----------------------------------------TACATTATATGTTT----TTAGTTGGTATCCT------------------------------------------TA---------G-TTCATTT------GATT-A-----------GTTT----------T------------TT----------G-----------CCAT--G----------AA--CA--TTGGAAAACAGTAGATAAT----------------------------------------TTGT---G
droEug1 scf7180000409005:1090518-1090767 + CTTCGCTCAGTTGAGGGTTCCGAAGAGCAATCCCAACACACCTACGAAAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAATA-ATTCGTGGGTGCCGCTAAAGCTTAGGG-----------------------------------------------T--TCCTA--T--AAGGGGA-GAAG------------------GGTC------T--TAAAGTTAA--TTGGGCGGAAAAC-A-A------TTCTATA------------------------------------------TTTTGTATAGCA----TTAGTTTGTATCTT---------------------------------------------------------TATTT------GGTT-A-----------GTTT----------T------------------------G-----------TAAT--G----------AA--TAA-TATTGAAA--GTAGATAATGG-------------------------------------TTTTT---C
droBia1 scf7180000302261:642985-643231 + CTCCGCTCCGTCGAGGGCTCCGAGGAGCAGTCCCAGCACACCTACGAGAGGTAAGGTGTCCAG--GTGGCCAGTTCC-GAGGGCGGAACGAAACG-ATTCGTGGGTGCCGCTTCAGCGTAGAG-----CA-----GA-------------------A--AC-AGGG----A--TTCTA--C--AAGGGGA---AG------------------GA--------T--TAAAGTTAG--TTGGGCGGAAAATCA-A------CTATG------------------------------------------CATTCTATCTAGTT----TTAGTTACCT---------------------------------------------------TATTGATCTTAGTTTT-----GA---------------------AAATC---------------------------------------------------------TT--TA--GTTGGAGCCCGTAGTTA--------------------------------------------------
droTak1 scf7180000415704:326275-326526 - CTGCGCTCAGTTGAGGGCTCCGAGGAGCAGTCCCAGCACACCTACGAGAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAATA-ATTCGAG-----------AACTAAGGG-----------------------------------------------A--TTCTA--AGAAAAGGGA--------------------AAGTGTA------C--TAAAGTTAG--TTGGGCGGAA-------TTACAATCCAGTA------------------------------------------TTTTATGTAGTT----ATAGT-GATATACT------------------------------------------TCT-ATATTGAT-TTCCTTT------GATT-A-----------GTTTGAAAATCCTTT------------TT----------G-----------TAAT--G----------A-----------------GTAGCTA-------------------------------------TAA-TTTAT---T
droEle1 scf7180000491273:13506-13830 - CTGCGTTCGGTTGAGGGCTCCGAGGAGCAATCCCAGCACACCTACGAGAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAACA-ATTCGTGGGTGCCGCTTAAGCTTAGGG-----CA-----GA-------------------A--AA-AAAGAGGGTTTTTCTA--T--AAAGGGAAGAAG------------------AGCC------T--TCAAGTTAG--TTGGGCGGAAAGT-A-ATTACAATTCTGTATTTTATGTAGTTCTGTATTT----------------TCTGTATTTTATGTAGTT----TTAGTCGGTATATTTACGGATATTGCTTTTGTAACAAATATTAGTAGTATACAACATA---------G-TTTAT------------------------------------------------------------------------------------------------------TTAAAACCTGTAGGCAAT----------------------------------------TTGTTTTC
droRho1 scf7180000779577:11938-12217 - CTCCGCTCCGTCGAGGGCTCCGAGGAGCAGTCGCAACACACCTACGAGAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAATA-ATTCGTGGGTGCCGCTTGAGCTTAGGT-----CA-----GA-------------------A--ATGAGGG----T--TTCTA--T--AAGGGGA-AATG------------------GTTC------C--TCCAGTTAG--TTGGGCGGAAAGC-A-ATTGAAATTCTATA------------------------------------------CTCTATGTAGTT----TCAGTTGTTATATT---------------------------------------------------------TATTT------GACA-A-----------GTTT----------TTGATATTCCAT-AT----------------------------GTA-------TATCTTA--TTTTAAAACTGTAGACAAT----------------------------------------TTGT--GA
droFic1 scf7180000453842:1044391-1044640 - CTCCGCTCGGTCGAGGGATCCGAGGAGCAGTCCCAGCACACCTACGAAAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAACA-ATTCGTGGGTGCCGCTTGAGCATAGAG-----CA-----GA-------------------A--GT-AA------C--TTCTT--A--AATGGCA-GGAG------------------GATT------A--TATAGTTAG--TTGGGCGGAAAGC-A-ATTGAAATTCTATA----------------------------------------------------TT----TTAGTTGGTGTATT--------------------------------------------------------TTATTT------GAAT-----------------------------------------T----------------------------GTG-------TGACTTG--ATTAAAAACTGTAGAAC--TG--------------------------------------TTGT--TC
droKik1 scf7180000302643:665187-665468 - CTGCGCGAAGTCGAGGGCTCACAGCAGCAGTCGCAGCACACCTACGAAAGGTAAGGTGTCCGG--TGGGCCAGTTCC-GAGGGCGGAACGAAACGGAATCGTGGGTGCCGCTTGAGCTTGTAG-----TA---------------------------------GGG----A--T--TCGGA------AC------------------TGAAAGGG-----------AGTAGTTAG--TAGGGCGGAAAGC-AAA------ATGGA--TTTAATTTAGTT-----T----------------------TA--TTTTGTAGTTA--TTTT---------------------------------------------------------------------------------TT-G-----------GTTTGAAATTCATTT------------TGATTAATTTTAGTTTTATTTTTTCAATTAGTTTTGATAATA-C-CC-TTAT----CC------TAGT----------------------------------------TTGT-GGG
droAna3 scaffold_12916:9961783-9962061 - CTGCGCGCTGTTGAAGGCTCCGAGGAGCAGTCGCAACACACCTACGAGAGGTAAGGTATCCGG--T-GGCCAGTTCC-GAGGGCGGAACGAAATG-ATTCG-GGGTGCC--TTGAGCTTAGAG-----GA-----TA-------------------ACGAT-AGGG----A--T--TT--A-AATGGAGA-GAAG------------------GGAC----------CTAGTTGG--TTGGGCGACAAATTA-A------TTAGC------------------------------------------CA--TTTTGTAGTTAAATTTACTGA----------------------------------------------------TTA-G------TAGTTTTGATTTTTTTAATATTTAATGTAG-----TAATT------------------------------TTTAGTTTTTGTATTAGTA-------TATC-CC--TGTAGAAACTGTAA-----------------------------------------------------
droBip1 scf7180000396580:1066425-1066653 + CTGCGAGCTGTTGAAGGCTCCGAGGAGCAGTCCCAGCACACATACGAGAGGTAAGGTATCCAG--GTGGCCAGTTCC-GAGGGCGGAACGAAATG-ATTCG-GGGTGCC--TTGAGCTTAGGG-----CC----------------------------------------------TT--A-AATGGAGA-GAAG------------------GGAC----------TTAGTCAG--TTGGGCGAAAAATGA-A------TTTGA------------------------------------------C--ATTATATAGTT----TTACTGA----------------------------------------------------TTA-G------TAGTTTTGATTTTTCT-ATATTTAAACTAG-----AAATG---------------------------------------------------------TT--TA-------------------------------------------------------------------AT
dp5 4_group3:2688284-2688557 - CTGCGCTCTGTCGAAGGCTCTGAGGAACAGTCCCAACATACCTATGAAAGGTAAGGTCTCCCA--GGTGCCAGTTCC-GAGGGCGGAACGAAACG-ATTCGTAGGTGCCGCTTGAGCTTAGGAA--TGCCTAAGATTTTAGGAGTTA-----GGTT-----------------------------------TAAATAAAAATGGATG------GGCTATAAA--ACTTTCGTTAG--TTGAACGGAAATT-A-TT---------------------------------TTTGTGGATTTTTGTTTTT----------------------------------------------------------------------------------------------------------TATTTTTTGTAG-----------------------------------------------------------------------------------------AAT--TATTGGGTTTTCCAATATGATAATCTTAAAATAAGTAAT-----TTAC
droPer2 scaffold_1:4179106-4179379 - CTGCGCTCTGTCGAAGGCTCTGAGGAACAGTCCCAACATACCTATGAAAGGTAAGGTCTCCCA--GGTGCCAGTTCC-GAGGGCGGAACGAAACG-ATTCGTAGGTGCCGCTTGAGCTTAGGAA--TGCCTAAGATCTTAGGAGTTA-----GGTT-----------------------------------TAAATAAAAATGGATG------GGCTATAGA--ACTTTCGTTAG--TTGGACGGAAATT-A-TT---------------------------------TTTGTGAATTTTTGTTTTT----------------------------------------------------------------------------------------------------------TATTTTTTGTAG-----------------------------------------------------------------------------------------AAT--TATTGGGTTTTTCAATATGATAATCTTAAAATAAGTAAT-----TTAC
droWil2 scf2_1100000004585:1077033-1077316 - CTACGATCTGTTGAGGGCTCAGAGGAACAATCTCAGCATACCTACGAAAGGTAAGTTAATCGC--GGGGCCAGTGCCAGAGGGCGGAACGAAAAA-ATTCGTGAGAGTCTA--GA-------T----------GATATAATGTGTAATGTGT----ATGAT-AGGA----A--T--TC--A------------------------ACTGCTAGAA------ACTAATTCTGTTAGCCGTGGGCGGCAATA-TCATT-TATTTCTTTA-----------------TTATTTAGAAAATATTTGGATTT-----------------------TAGTATTTG------------------------------------------TA-----------------------------------------GTTTGATCTTCC------------ATTAG----------G-----------TATT--T----------AT--TT--ATTGAAA-------------------------------------TAAATATAAATAAT-TA----GT
droVir3 scaffold_12963:6395650-6395764 - CTGCGCGCTGTCGAGGGATCCGAGGAGCAGTCACAGCATACCTATGAAAGGTAAG---TGCAGCTGGCTCCAGTGCC-GAGGGCGGAACGAAATAAATGCGTGGATGCCGCTTCTGCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:25540000-25540235 - CTGCGAGCCGTCGAGGGATCCGAGGAGCAGTCGCAACACACCTACGAAAGGTAAG-TG--CAGCGGGCGCCAGTGCC-GAGGGCGGAACGAAATGAATGCGTGGGTGCCGTTTCTGCTAAATAG--AGATCGTGATGTGC------------------------------------GT--A-GAGGGGGA-CAAGCA-----------------GCTATTGA--TAAAGAGCTAG--TTGGGCGGCATTT-A-A-T-ACATTATTTC----------------------------------------TATT--------TC----TTAGTGT----CT------------------------------------------------T-CTACTCTTAATTT------GTGT-A-----------GTCT----------T------------A-------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:9623392-9623572 - CTGCGCTCCGTCGAGGGCTCCGAGGAACAGTCTCAACATACCTATGAAAGGTAAG-TGT--AGCTGGCGCCAGTACC-GAGGGCGGAACGAAACAAATGCCTGGGTGCCGCTTGTGCTTCCTAGGTAGATCTAGAAGTCC------------------------------------AT--G-TC---------------------------AGTG-----------AGGGGCTAG--TGGAGCGGCAATT-------ATATGTTATT----------------------------------------GAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTCCGCTCCGTCGAGGGCTCCGAGCAGCAATCGCAACACACCTACGAGAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAACA-ATTCGTGGGTGCCGCTTGAGCTTAGGT-----CC-----------------------------------------------------------------------------TGGAAGGGTT------C--CAGTGTTAG--TTGGGCGGAAA-C-A-ATT-AAATTCTATA----------------------------------------TATTTTATATGGTT----TTAGTTGGTATTCT------------------------------------------TA---------G-TTCATTT------GACT-A-----------GTTT----------T------------A-----------G-----------CAAT--G----------AT--CA--TTTGGAAACTGTAGATAAT----------------------------------------TTGT---GSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....CTCCGTCGAGGGCTCCGAGCAGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.00401300000000000000
.........GTCGAGGGCTCCGAGCAGCAATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000000000
CTCCGCTCCGTCGAGGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
......TCCGTCGAGGGCTCCGAGCAGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
..CCGCTCCGTCGAGGGCTCCGAGCAGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000000000
.TCCGCTCCGTCGAGGGCTCCGAGCAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000000010000
.....CTCCGTCGAGGGCTCCGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.........................AGCAATCGCAACACACCTACGAGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
....GCTCCGTCGAGGGCTCCGAGCAGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------AT--CA--TTTGGAAACTGTA......................................................1811.00100010000000000000
....GCTCCGTCGAGGGCTCCGAGCAGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
......................................................................................................................TAGGT-----CC-----------------------------------------------------------------------------TGGAAGGCC...............................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
droSec2
CTCCGCTCCGTCGAGGGCTCCGAGCAGCAATCGCAACACACCTACGAGAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAACA-ATTCGTGGGTGCCGCTTGAGCTTAGGG-----CC-----------------------------------------------------------------------------TGGAAG-ATT------C--CATTGTTAG--TTGGGCGGAAAAC-A-ATT-AAATTCTATA----------------------------------------TATTTTATATGGTT----TTAGTTGGTATTCT------------------------------------------TA---------G-TTCATAT------GACT-A-----------GTTT----------T------------A-----------G-----------CAAT--G----------AT--CA--TTTGGAAACTGTAGATAA-------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....CTCCGTCGAGGGCTCCGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.............................................................AG--TGGGCCAGTTCC-GAGGGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.........................AGCAATCGCAACACACCTACGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
....GCTCCGTCGAGGGCTCCGAGCAGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
dm3
CTCCGCTCCGTCGAGGGCTCCGAGCAGCAATCGCAACACACGTACGAGAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAACG-ATTCGTGGGTGCCGCTTGAGCTTAGGT-----CC-----------------------------------------------------------------------------TGGAGAGGTT------C--CAGTGTTAG--TTGGGCGGAAAAC-A-ATT-AAATTCTATA----------------------------------------TATTTTATATGGTT----TCAGTTGGTATTCT------------------------------------------TA---------G-TTCATTT------GACT-A-----------GCTT----------T------------A-----------G-----------CAAT--G----------AT--CA--CTTGGAAACTGTAGATAAT----------------------------------------TTGT---GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................GCAACACACGTACGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000010000001000100000000000000000000000001000000000
......TCCGTCGAGGGCTCCGAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TGAGCTTAGGT-----CC-----------------------------------------------------------------------------TGGAGAGG................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CTCCGTCGAGGGCTCCGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................................................G--TGGGCCAGTTCC-GAGGGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000
............................................................................................ACG-ATTCGTGGGTGCCGCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CGCAACACACGTACGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AGCAGCAATCGCAACACACGTACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................................................GTAAGGTGTCCAG--TGGGCCAGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CGCAACACACGTACGAGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CGTCGAGGGCTCCGAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CCGCTCCGTCGAGGGCTCCGAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................AGCAGCAATCGCAACACACGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------A-----------G-----------CAAT--G----------AT--CA--CTTGGAAACTGTAGA....................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GAGCAGCAATCGCAACACACGTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CGCAACACACGTACGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
........CGTCGAGGGCTCCGAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..CCGCTCCGTCGAGGGCTCCGAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CTTGAGCTTAGGT-----CC-----------------------------------------------------------------------------TGGAGAGGTT------........................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................TGGGCCAGTTCC-GAGGGCGGAACGAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--G----------AT--CA--CTTGGAAACTGTA......................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TCCGTCGAGGGCTCCGAGCAGCAATCGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................CGAAACG-ATTCGTGGGTGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................................................................................................AG--TTGGGCGGAAAAC-A-ATT-......................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..........................GCAATCGCAACACACGTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GCTCCGTCGAGGGCTCCGAGCAGCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GTCGAGGGCTCCGAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.....CTCCGTCGAGGGCTCCGAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCAACACACGTACGAGAGGTAAGGTGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TCCAG--TGGGCCAGTTCC-GAGGGCGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........GTCGAGGGCTCCGAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................AGAGGTT------C--CAGTGTTAG--TTGG......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................GTGTCCAG--TGGGCCAGTTCC-GAGGGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................GAAACG-ATTCGTGGGTGCCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................TACGAGAGGTAAGGTGTCCAG--TGGGCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AATCGCAACACACGTACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CACGTACGAGAGGTAAGGTGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CTCCGTCGAGGGCTCCGAGCAGCAATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........CGAGGGCTCCGAGCAGCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTCCGCTCCGTCGAGGGCTCCGAGGAGCAATCCCAACACACCTACGAGAGGTAAGGTGTCCAG--TGCGCCGGTTCC-GAGGGCGGAACGAAATG-ATTCGTGGGTGCCGCTTGAGCTTAGGG-----CC-----------------------------------------------------------------------------TGGAAGGGTC------T--CAGAGTTAG--TTGGGCGGAAAAC-A-ATT-AAATTCTGTA------------------------------------------TGTTATATGGTT----TTAGTTGGTATTCT------------------------------------------TA---------G-TTCATTT------GACT-A-----------GTTT----------T------------AT----------G-----------CAAT--G----------AT--CG--TTGGGAAACTGTAGATAAT----------------------------------------T-------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................CCGAGGAGCAATCCCAACACACCTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
.............................ATCCCAACACACCTACGAGAGGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
.........GTCGAGGGCTCCGAGGAGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
....................CGAGGAGCAATCCCAACAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
droYak3
CTCCGCTCCGTCGAGGGCTCCGAGGAGCAGTCCCAACACACCTACGAGAGGTAAGGTGTCCAG--TGCGCCAGTTCC-GAGGGCGGAACGAAATA-ATTCGTGGGTGCCGCTTGAGCTTAGGG-----CC-----------------------------------------------------------------------------TGGAAGGGTA------T--CAGCGTTAG--TTGGGCGGAAAAC-C-ATT-AAATCCTATA----------------------------------------TACATTATATGTTT----TTAGTTGGTATCCT------------------------------------------TA---------G-TTCATTT------GATT-A-----------GTTT----------T------------TT----------G-----------CCAT--G----------AA--CA--TTGGAAAACAGTAGATAAT----------------------------------------TTGT---GSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................C-----------------------------------------------------------------------------TGGAAGGGTA------T--CAGCGTTA.............................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.............................GTCCCAACACACCTACGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.....................GAGGAGCAGTCCCAACACACCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.........................AGCAGTCCCAACACACCTACGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
CTCCGCTCCGTCGAGGGCTCCGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
droEug1
CTTCGCTCAGTTGAGGGTTCCGAAGAGCAATCCCAACACACCTACGAAAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAATA-ATTCGTGGGTGCCGCTAAAGCTTAGGG-----------------------------------------------T--TCCTA--T--AAGGGGA-GAAG------------------GGTC------T--TAAAGTTAA--TTGGGCGGAAAAC-A-A------TTCTATA------------------------------------------TTTTGTATAGCA----TTAGTTTGTATCTT---------------------------------------------------------TATTT------GGTT-A-----------GTTT----------T------------------------G-----------TAAT--G----------AA--TAA-TATTGAAA--GTAGATAATGG-------------------------------------TTTTT---CSizeHit CountTotal NormTotal
No Reads
droBia1
CTCCGCTCCGTCGAGGGCTCCGAGGAGCAGTCCCAGCACACCTACGAGAGGTAAGGTGTCCAG--GTGGCCAGTTCC-GAGGGCGGAACGAAACG-ATTCGTGGGTGCCGCTTCAGCGTAGAG-----CA-----GA-------------------A--AC-AGGG----A--TTCTA--C--AAGGGGA---AG------------------GA--------T--TAAAGTTAG--TTGGGCGGAAAATCA-A------CTATG------------------------------------------CATTCTATCTAGTT----TTAGTTACCT---------------------------------------------------TATTGATCTTAGTTTT-----GA---------------------AAATC---------------------------------------------------------TT--TA--GTTGGAGCCCGTAGTTA--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CTGCGCTCAGTTGAGGGCTCCGAGGAGCAGTCCCAGCACACCTACGAGAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAATA-ATTCGAG-----------AACTAAGGG-----------------------------------------------A--TTCTA--AGAAAAGGGA--------------------AAGTGTA------C--TAAAGTTAG--TTGGGCGGAA-------TTACAATCCAGTA------------------------------------------TTTTATGTAGTT----ATAGT-GATATACT------------------------------------------TCT-ATATTGAT-TTCCTTT------GATT-A-----------GTTTGAAAATCCTTT------------TT----------G-----------TAAT--G----------A-----------------GTAGCTA-------------------------------------TAA-TTTAT---TSizeHit CountTotal NormTotal
No Reads
droEle1
CTGCGTTCGGTTGAGGGCTCCGAGGAGCAATCCCAGCACACCTACGAGAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAACA-ATTCGTGGGTGCCGCTTAAGCTTAGGG-----CA-----GA-------------------A--AA-AAAGAGGGTTTTTCTA--T--AAAGGGAAGAAG------------------AGCC------T--TCAAGTTAG--TTGGGCGGAAAGT-A-ATTACAATTCTGTATTTTATGTAGTTCTGTATTT----------------TCTGTATTTTATGTAGTT----TTAGTCGGTATATTTACGGATATTGCTTTTGTAACAAATATTAGTAGTATACAACATA---------G-TTTAT------------------------------------------------------------------------------------------------------TTAAAACCTGTAGGCAAT----------------------------------------TTGTTTTCSizeHit CountTotal NormTotal
No Reads
droRho1
CTCCGCTCCGTCGAGGGCTCCGAGGAGCAGTCGCAACACACCTACGAGAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAATA-ATTCGTGGGTGCCGCTTGAGCTTAGGT-----CA-----GA-------------------A--ATGAGGG----T--TTCTA--T--AAGGGGA-AATG------------------GTTC------C--TCCAGTTAG--TTGGGCGGAAAGC-A-ATTGAAATTCTATA------------------------------------------CTCTATGTAGTT----TCAGTTGTTATATT---------------------------------------------------------TATTT------GACA-A-----------GTTT----------TTGATATTCCAT-AT----------------------------GTA-------TATCTTA--TTTTAAAACTGTAGACAAT----------------------------------------TTGT--GASizeHit CountTotal NormTotal
No Reads
droFic1
CTCCGCTCGGTCGAGGGATCCGAGGAGCAGTCCCAGCACACCTACGAAAGGTAAGGTGTCCAG--TGGGCCAGTTCC-GAGGGCGGAACGAAACA-ATTCGTGGGTGCCGCTTGAGCATAGAG-----CA-----GA-------------------A--GT-AA------C--TTCTT--A--AATGGCA-GGAG------------------GATT------A--TATAGTTAG--TTGGGCGGAAAGC-A-ATTGAAATTCTATA----------------------------------------------------TT----TTAGTTGGTGTATT--------------------------------------------------------TTATTT------GAAT-----------------------------------------T----------------------------GTG-------TGACTTG--ATTAAAAACTGTAGAAC--TG--------------------------------------TTGT--TCSizeHit CountTotal NormTotal
No Reads
droKik1
CTGCGCGAAGTCGAGGGCTCACAGCAGCAGTCGCAGCACACCTACGAAAGGTAAGGTGTCCGG--TGGGCCAGTTCC-GAGGGCGGAACGAAACGGAATCGTGGGTGCCGCTTGAGCTTGTAG-----TA---------------------------------GGG----A--T--TCGGA------AC------------------TGAAAGGG-----------AGTAGTTAG--TAGGGCGGAAAGC-AAA------ATGGA--TTTAATTTAGTT-----T----------------------TA--TTTTGTAGTTA--TTTT---------------------------------------------------------------------------------TT-G-----------GTTTGAAATTCATTT------------TGATTAATTTTAGTTTTATTTTTTCAATTAGTTTTGATAATA-C-CC-TTAT----CC------TAGT----------------------------------------TTGT-GGGSizeHit CountTotal NormTotal
No Reads
droAna3
CTGCGCGCTGTTGAAGGCTCCGAGGAGCAGTCGCAACACACCTACGAGAGGTAAGGTATCCGG--T-GGCCAGTTCC-GAGGGCGGAACGAAATG-ATTCG-GGGTGCC--TTGAGCTTAGAG-----GA-----TA-------------------ACGAT-AGGG----A--T--TT--A-AATGGAGA-GAAG------------------GGAC----------CTAGTTGG--TTGGGCGACAAATTA-A------TTAGC------------------------------------------CA--TTTTGTAGTTAAATTTACTGA----------------------------------------------------TTA-G------TAGTTTTGATTTTTTTAATATTTAATGTAG-----TAATT------------------------------TTTAGTTTTTGTATTAGTA-------TATC-CC--TGTAGAAACTGTAA-----------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................GTCGCAACACACCTACGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.......................GGAGCAGTCGCAACACACCTACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.................CTCCGAGGAGCAGTCGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
...................CCGAGGAGCAGTCGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.................CTCCGAGGAGCAGTCGCAACACAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.......................GGAGCAGTCGCAACACAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droBip1
CTGCGAGCTGTTGAAGGCTCCGAGGAGCAGTCCCAGCACACATACGAGAGGTAAGGTATCCAG--GTGGCCAGTTCC-GAGGGCGGAACGAAATG-ATTCG-GGGTGCC--TTGAGCTTAGGG-----CC----------------------------------------------TT--A-AATGGAGA-GAAG------------------GGAC----------TTAGTCAG--TTGGGCGAAAAATGA-A------TTTGA------------------------------------------C--ATTATATAGTT----TTACTGA----------------------------------------------------TTA-G------TAGTTTTGATTTTTCT-ATATTTAAACTAG-----AAATG---------------------------------------------------------TT--TA-------------------------------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
dp5
CTGCGCTCTGTCGAAGGCTCTGAGGAACAGTCCCAACATACCTATGAAAGGTAAGGTCTCCCA--GGTGCCAGTTCC-GAGGGCGGAACGAAACG-ATTCGTAGGTGCCGCTTGAGCTTAGGAA--TGCCTAAGATTTTAGGAGTTA-----GGTT-----------------------------------TAAATAAAAATGGATG------GGCTATAAA--ACTTTCGTTAG--TTGAACGGAAATT-A-TT---------------------------------TTTGTGGATTTTTGTTTTT----------------------------------------------------------------------------------------------------------TATTTTTTGTAG-----------------------------------------------------------------------------------------AAT--TATTGGGTTTTCCAATATGATAATCTTAAAATAAGTAAT-----TTACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....CTCTGTCGAAGGCTCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
.......CTGTCGAAGGCTCTGAGGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
.......CTGTCGAAGGCTCTGAGGAACAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000001
...............GGCTCTGAGGAACAGTCCCAACATACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.......CTGTCGAAGGCTCTGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..GCGCTCTGTCGAAGGCTCTGAGGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...........CGAAGGCTCTGAGGAACAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............GAAGGCTCTGAGGAACAGTCCCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...........CGAAGGCTCTGAGGAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
............GAAGGCTCTGAGGAACAGTCCCAACATAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010000000
...........CGAAGGCTCTGAGGAACAGTCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
droPer2
CTGCGCTCTGTCGAAGGCTCTGAGGAACAGTCCCAACATACCTATGAAAGGTAAGGTCTCCCA--GGTGCCAGTTCC-GAGGGCGGAACGAAACG-ATTCGTAGGTGCCGCTTGAGCTTAGGAA--TGCCTAAGATCTTAGGAGTTA-----GGTT-----------------------------------TAAATAAAAATGGATG------GGCTATAGA--ACTTTCGTTAG--TTGGACGGAAATT-A-TT---------------------------------TTTGTGAATTTTTGTTTTT----------------------------------------------------------------------------------------------------------TATTTTTTGTAG-----------------------------------------------------------------------------------------AAT--TATTGGGTTTTTCAATATGATAATCTTAAAATAAGTAAT-----TTACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....GCTCTGTCGAAGGCTCTGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003210000
.....CTCTGTCGAAGGCTCTGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
.......CTGTCGAAGGCTCTGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
......TCTGTCGAAGGCTCTGAGGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.................................................................GGTGCCAGTTCC-GAGGGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
............................................................................................................CGCTTGAGCTTAGGAA--TGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....CTCTGTCGAAGGCTCTGAGGAACAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...CGCTCTGTCGAAGGCTCTGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
............GAAGGCTCTGAGGAACAGTCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.........GTCGAAGGCTCTGAGGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droWil2
CTACGATCTGTTGAGGGCTCAGAGGAACAATCTCAGCATACCTACGAAAGGTAAGTTAATCGC--GGGGCCAGTGCCAGAGGGCGGAACGAAAAA-ATTCGTGAGAGTCTA--GA-------T----------GATATAATGTGTAATGTGT----ATGAT-AGGA----A--T--TC--A------------------------ACTGCTAGAA------ACTAATTCTGTTAGCCGTGGGCGGCAATA-TCATT-TATTTCTTTA-----------------TTATTTAGAAAATATTTGGATTT-----------------------TAGTATTTG------------------------------------------TA-----------------------------------------GTTTGATCTTCC------------ATTAG----------G-----------TATT--T----------AT--TT--ATTGAAA-------------------------------------TAAATATAAATAAT-TA----GTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............GAGGGCTCAGAGGAACAATCTCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00210010
.........GTTGAGGGCTCAGAGGAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200101
...........TGAGGGCTCAGAGGAACAATCTCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
................GCTCAGAGGAACAATCTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.TACGATCTGTTGAGGGCTCAGAGGAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
.....ATCTGTTGAGGGCTCAGAGGAACAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100001
........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATCTTCC------------ATTAG----------G-----------TATT--......................................................................................2211.00100100
.........GTTGAGGGCTCAGAGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100
.TACGATCTGTTGAGGGCTCAGAGGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
droVir3
CTGCGCGCTGTCGAGGGATCCGAGGAGCAGTCACAGCATACCTATGAAAGGTAAG---TGCAGCTGGCTCCAGTGCC-GAGGGCGGAACGAAATAAATGCGTGGATGCCGCTTCTGCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................ATCCGAGGAGCAGTCACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003000000000000000000100000000000000000000000000000000000000000020
.....................................................................CCAGTGCC-GAGGGCGGAACGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........TCGAGGGATCCGAGGAGCAGTCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
....GCGCTGTCGAGGGATCCGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
.........................................................................................GAAATAAATGCGTGGATGCCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
..................................................................GCTCCAGTGCC-GAGGGCGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
.................ATCCGAGGAGCAGTCACAGCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
.................ATCCGAGGAGCAGTCACAGCATAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.............................GTCACAGCATACCTATGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................GAAATAAATGCGTGGATGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
....GCGCTGTCGAGGGATCCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
CTGCGAGCCGTCGAGGGATCCGAGGAGCAGTCGCAACACACCTACGAAAGGTAAG-TG--CAGCGGGCGCCAGTGCC-GAGGGCGGAACGAAATGAATGCGTGGGTGCCGTTTCTGCTAAATAG--AGATCGTGATGTGC------------------------------------GT--A-GAGGGGGA-CAAGCA-----------------GCTATTGA--TAAAGAGCTAG--TTGGGCGGCATTT-A-A-T-ACATTATTTC----------------------------------------TATT--------TC----TTAGTGT----CT------------------------------------------------T-CTACTCTTAATTT------GTGT-A-----------GTCT----------T------------A-------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................GTAAG-TG--CAGCGGGCGCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..........................................................................................................................................................................................GGGA-CAAGCA-----------------GCTATTGA--T......................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................CCGAGGAGCAGTCGCAACACACCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.......................GGAGCAGTCGCAACACACCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................CGAGGAGCAGTCGCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.................ATCCGAGGAGCAGTCGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.....AGCCGTCGAGGGATCCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droGri2
CTGCGCTCCGTCGAGGGCTCCGAGGAACAGTCTCAACATACCTATGAAAGGTAAG-TGT--AGCTGGCGCCAGTACC-GAGGGCGGAACGAAACAAATGCCTGGGTGCCGCTTGTGCTTCCTAGGTAGATCTAGAAGTCC------------------------------------AT--G-TC---------------------------AGTG-----------AGGGGCTAG--TGGAGCGGCAATT-------ATATGTTATT----------------------------------------GAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......TCCGTCGAGGGCTCCGAGGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110

Generated: 05/19/2015 at 05:30 AM