dsi_1811

intron [2r_18733348_18736767_-]; exon [2r_18733299_18733347_-]; five_prime_UTR [2r_18733299_18733347_-]; intron [2r_18726217_18733298_-]

-#################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GATCTGGCCAGAGGATCCGTGGATATCGACGTATGCATGTCTTATAGAAGGTACGGATTGAGTTGTGCAAACATCAAATTGGCATTCCCCAAGCAGAAACAAAAACAAAGTCAAGATCATGGCGCGGAAAGGGGATATTTATTTGGGAGCTCTTAACTGGGCTTGCGAGTCATCGTCGAAAACCGAAACCAGTTCAGTTGCTTTTGGCCGCGTTTGTTGTTTTTAGCCAGTCCGTGGGTGCCGGCCGGCT **************************************************************............((((((...(((((..((...............((((......)))))).....))))).....(((((.((((((......)))))).))))).....(((.....)))..))))))....**************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M053 female body	O001 Testis	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries
......................ATATCGACGTATGCATGT..................................................................................................................................................................................................................	18	0	1	3.00	3	2	1	0	0	0	0	0	0
......................ATATCGACGTATGCATGTCTT...............................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
.ATCTGGCCAGAGGATCCGTGG....................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0
........................................CTTATAGAAGGTACGGAT................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0
..............................................................................................................................................................................GTCGAAAACCGAAACCAGTTCAGT....................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0
............GGATCCGTGGATATCGACGT..........................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0
................................................................GTGCAAACATCAAATTGG........................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0
............................................................................................................................CGGAAGGGGTGTATTTATT...........................................................................................................	19	3	13	0.69	9	0	0	0	0	7	1	0	1
................................................................................GCCGTTCCCCAAGCAGAA........................................................................................................................................................	18	2	7	0.14	1	0	1	0	0	0	0	0	0
..........................................TATCGGAGGTACGGATT...............................................................................................................................................................................................	17	2	7	0.14	1	0	0	0	0	0	1	0	0
......................................................................................................................................................................GAGTCATCGTTGAAA.....................................................................	15	1	8	0.13	1	0	0	0	0	1	0	0	0
.....................................................................CACATCAACTTGGAATTCCC.................................................................................................................................................................	20	3	11	0.09	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................GTCTTAACTGGGCGTGCCA..................................................................................	19	3	12	0.08	1	0	0	0	0	0	0	1	0
..................................................GTTCGGATTGAGGTCTGCAA....................................................................................................................................................................................	20	3	13	0.08	1	0	0	0	0	1	0	0	0
..................................................GTACGCATTGATTAGTGCA.....................................................................................................................................................................................	19	3	15	0.07	1	0	0	0	0	0	0	1	0

CTAGACCGGTCTCCTAGGCACCTATAGCTGCATACGTACAGAATATCTTCCATGCCTAACTCAACACGTTTGTAGTTTAACCGTAAGGGGTTCGTCTTTGTTTTTGTTTCAGTTCTAGTACCGCGCCTTTCCCCTATAAATAAACCCTCGAGAATTGACCCGAACGCTCAGTAGCAGCTTTTGGCTTTGGTCAAGTCAACGAAAACCGGCGCAAACAACAAAAATCGGTCAGGCACCCACGGCCGGCCGA **************************************************............((((((...(((((..((...............((((......)))))).....))))).....(((((.((((((......)))))).))))).....(((.....)))..))))))....**************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
................................................................................................................................................................CGTAAGCTCAGTAGCAACTTTT....................................................................	22	3	1	1.00	1	1	0	0
.......................................................................................................................ACCGCGCCTGTCCCC....................................................................................................................	15	1	4	0.25	1	0	1	0
..........................................................................................................TCTCAGTTCGAGTACCG...............................................................................................................................	17	2	9	0.11	1	0	0	1
.............................................................................................................................................................................................................................AAATAGGTCAGGCCCC.............	16	2	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:18733099-18733348 -	dsi_1811	GATCTG------GCCAG--AGGATCCGT----------GGATATCGA-CGTATGCATGTCTTATAGA-AGGTA----------C--GGATTGAGTTGTGCAAAC--ATCAAATTGGCATTCC----CCAAGCAGAAA-CA--AAAAC--A----AAG-TCAAGATCATGG------CGCGGA------------A---AGGGGATA--------TTTA----------------TT----------------T--GGGAGCTCTTAACTGGGCTT------------------------------G------------------------------------CGAGT-------------CATCGTCGA----------------AAA---CCGAAACCAGTTCAG-----------------TTGCTTTT-GGCCGCGTT----TGTT------------------------------GTTTT-TAGCCAG-TCC-GTGGGTGCCGGCCGGCT
droSec2	scaffold_9:1505137-1505386 -		GATCTG------GCCAG--AGGATCCGT----------GGATATCGA-CGTATGCATGTCTTATAGA-AGGTA----------C--GGATTGAGTTGTGCAAAC--ATCAAATTGGCATTCC----CCATGCAGAAA-CA--AAAAC--A----AAG-TCAAGATCATGG------CGCGGA------------A---AGGGGATA--------TTTA----------------TT----------------T--GGGAGCTCTTAGATGGGCTT------------------------------G------------------------------------CGAGT-------------CATCGTCGC----------------AAA---CCGAAACCAGTTCAG-----------------TTGCTTTT-GGCCGCGTT----TGTT------------------------------GTTTT-TAGCCAG-TCC-GTGGGTGCCGGCCGGCT
dm3	chr2R:18195513-18195762 -		GATCTG------GCCAG--AGGATCCGT----------GGATATCGA-CGTATGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCAAAC--ATCAAATTGGCATTCC----CCAAGCAGAAA-CA--AAAAC--A----AAG-TCAAGATCATGG------CGCGGA------------A---AGGGGATA--------TTTA----------------TT----------------T--GGGAGCTCTTAACTGGGCTT------------------------------G------------------------------------CGAGT-------------CATCATCGA----------------AAA---CCGAAACCAGTTCAG-----------------TTGCTTTT-GGCCGCGTT----TGTT------------------------------GTTTT-TAGCCAG-TCC-GTGGGTGCCGGCCGGCT
droEre2	scaffold_4845:12335710-12335949 -		GATCTG------GCCCG--AGGATCCGT----------GGATATCGA-CGCATGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCAAAC--ACCAAATTGCCATTCC----TCGAGCAGAAA-CA--AAAGC--A----AAG-TCAAGATCGTGG------CGCGGA------------A---AGGGGATA--------CTTA----------------TT----------------T--GGGAGCTCT----------G------------------------------G------------------------------------CGAGT-------------CATCATCGA----------------AAA---CGGAAACCAGTTCAG-----------------TTGCTTTT-GGCCGCGTT----TGTT------------------------------GTTTT-TAGCCAG-TCC-GTGGGTGCCGGCCGGCC
droYak3	2R:17946479-17946736 -		GATCTG------GCCAG--AGGATCCGT----------GGTTATCGA-CGTATGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCAAAC--ATCAAATTGGCATTCG----CCGAGCAGAAA-CG--AAAAC--A----AAG-TCAAGATCATGG------CGAGGC------------GGGGGGTGGA-A--------TTTA----------------TT----------------T--GGGAGCTCTTAACTGGGCTT------------------------------G------------------------------------CGAGT-------------CATCATCGA----------------AAA---CCGAAACCAGTTCAG-----------------TTGCTTTTCGGCCGCGTTTGTTTGTT------------------------------GTTTT-CAGCCAAGTCC-GTGGGTGCCGGCCGGCT
droEug1	scf7180000409672:6098199-6098456 -		GATCTG------GCCAGCGAGGATCCGA----------G--GATCGA-CGTCTGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCCAAC--ATCAAATTGGCATTCC----CCAA--------------AACT----AAAAG-TAAAGATCAAGGTGCGGGCGCGGG------------C---AGGGGATA----------------------------TT----------------T--TGGAGCTCTTAACTGGGCTT------------------------------G------------------------------------CGAGT-------------CATTGTTGA---GCTGA-G-AAAAAAAAGGCCCAAAACCAGTTCAG-----------------TTGCTTTT-GGCCGCGTT----TGTT------------------------------GTTTTCCAGCCAA-TCT-GTGGGTGCCGGCCGGCT
droBia1	scf7180000302143:2516613-2516851 +		GCTCCG------GCCCG--AGGACTCGA----------G--GATCGA-CGTCTGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCACAC--ATCGAATTGGCATTTC----C----------------------A----AAG-TCAAGATCAAGG------CGAGGG------------C----GGGGATG--------ATT-----------------TT----------------C--GGGGGCTCTTAACTGGGC-T------------------------------G------------------------------------CGAGT-------------CATCGTCGC---GCCGA-GGAAAGAAAA---CCGAAACCAGTTCAG-----------------TTGCTTTT-GGCCGCGTT----TGTT------------------------------GTT-T-TAGCCAG-TCT-GTGGGTGCCGGCCGGCT
droTak1	scf7180000415739:48611-48889 -		GCTCTG------GCCTG--AGGATCCGATTCCGCGTCCGAGGATCGA-CGTCTGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCAAAC--ATCCAATTGGCATTCC----CCAAACGAAAA-CAGAAAAACTGAAAAAAAG-TCAAGATCAAGG------CGAGGG------------C---AGGGGATA----------TA----------------TT----------------T--TGGTGCTCTTAACTGGGCCT------------------------------G------------------------------------CGAGT-------------CATCATCGC---GCAGAAAGAAAAAAAA---CGAAAACCAGTTCAG-----------------TTACTTTT-GGCCGCGTT----TGTT------------------------------GTTTT-TAGCCAG-TCT-GTGGGTGCCGGCCGGCT
droEle1	scf7180000491282:81402-81644 +		GCTCTG------GCCAG--AGGATCCCA----------G--GATCGA-CGAATGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCCAAC--ATCAAATTGGCATTCC----CCAAAC-------------GC--A--GAAAG-TCAAGATCAAGG------CGCGGG------------C---AGGGGCTC--------TGTT----------------TT----------------T---GGGGCTCT-AACTGGGATT------------------------------G------------------------------------CGAGT-------------CATCATCGG---GCAG---------AAA---ACAAAACCAGTTCAG-----------------TTGCTTTT-GGCCGCGTT----TGTT------------------------------GTTTT-TAGCCAG-TTTCGTGGGTGCCGGCCGGCT
droRho1	scf7180000778226:34339-34599 +		GCTCTG------GCCTG--AGGATCCGA----------G--GATCGA-CGAATGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCCAAC--ATTAAATTGGCATTTC----CTAAGCCCAAAACC-AAACCCT---AAAAAG-TCAAGATCAAGG------CGAGGG------------TGGGGGCA----GAGTTA--CTGT----------------TT----------------T--GGGGGCTCT-AACTGGGATT------------------------------G------------------------------------CGAGT-------------CATCATCGC---GCAG---------AAA---ATAAAACCAGTTCAG-----------------TTGCTTTC-GGCCGCGTC----TGTT------------------------------GTTTT-TAGCCAC-TCT-GTGGGTGCCGGCCGGCT
droFic1	scf7180000454066:2098273-2098543 -		GCTCCC------AACTG--AGGATCCAA----------G--GATCGG-CGAATGCATGTCTTATAGA-AGGTA----------A--GGATTGAGTTGTGCAAAC--CCCAAATTGGCATTCC----CCGA----AAA-CC--CA--------AAAAGTTCAAGATC--------------------------------------------------TT----------------TT----------------T--CGGCGCTCT-AACTGGGAAT------------------------------G------------------------------------CGAGTCATTCGGCGGCATCGTCATCATTGTG---G-G--GAA-AAA--AC-CAAACCAGTTCAG-----------------TTGCTTTTCGGCCGAGTT----TGTTTTATTTTTTATTATTTTGCTCTCTTA---GCTTTT-TAGCCAG-TCT-GTGGGTGCCGGCCGGCT
droKik1	scf7180000302471:1296624-1296862 +		GCTCTGAAACTGGCCA---TTAA-CCGA----------G--GACGGATCGTATGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTACACACGCCTCGGATTGGCATTCC----CGAA---------------AC--A----TGG-TCAAGACCAAGC---CAGCGAGGC------------T-----GGGGTA--------T--T----------------TT----------------T--CGGCACTCT-AAGCGGGCATCGG---------------------------G------------------------------------AGAGTCATGCTGCGGCGTC-------------------------AA---G-CAAACCAGTTCAGA----------------TTGTGTGT-G----TGTC----TG-----------------------------------CT-TGGTGTG-TCT-GTGGGTGCCGGCCGGCT
droAna3	scaffold_13266:2209700-2210015 -		GCTCTG------ACTGGCCTGGA-CCTC----------G--GATCGATCGTATGCATGTCTTATAGA-AGGTAAGACAATC--CGAAAATTAAGTTGTGCGAGC-------------ATTCCCT--CCAAAAAGCAA-CA--CAAACTAAAAACCAT-TCAAGATCATGG------CAAGACATGT--------G---AGGGGTT----------TTATGTAGCTTGTATTTTTTTTTGGTTTTTTTTTTTTTGGGGGGGCTAT-AACTGGGCTT------------------------------G------------------------------------AGAGTCATTTGGCGGCGTCATCATCAC----------------GAA---G-CAAACTGGTTCGCATTCAGC----------TTGTTTCT-TGCCGT-------TGTC--------------------TTTTTGTG--TATTT-TAGCCAG-TCT-GTGGGTGCCGGCCGGCA
droBip1	scf7180000396384:371195-371493 +		GCTCTG------ACTGGCCTGGATC-TC----------G--GATCGATCGTATGCATGTCTTATAGA-AGGTAAGACG--GTCCGAAAATTAAGTTGTGCGAGC-------------ATTCCCT--CCAAAAAATAACCA--AAAAC--AAAACCAT-TCAAGATCACGG------CAAGGCACACAGG----------GGGGCT-TTTTCTGT---T----------------TTTTTT----TGT-----G--GGGGGCTAT-AACTGGGCTT------------------------------G------------------------------------AGAGTCATTTGGCGGCGTCATCATCAC----------------GAA---G-CAAACTGGTTCGCTTTCAGC----------TTGTTTCT-TGCTGT-TT----TGTC--------------------GTTTTGTGTGGGTTT-TAGCCAG-TCT-GTGGGTGCCGGCCGGCT
dp5	3:14940092-14940423 +		GCTCTG------CGCCGCCTGAA-CCGA----------GAGGATCGCCCGTATGCATGTCTTATAGGTAGGTAAATCAAGGCCC--GAATTGAGTTGTATAAAC--ACGAGATTGGCATTCGTTCCTC-------------------------------CAACATCAAGA---GC------------GGGAGGC-------C----TTTTCGCT---T----------------TTT---------------C--GGCTGCTCT-GAGAGGTCT-CTGAGACTCAGACAGGGAGGAACTGGAACTGAGACCGA-ACCGAGACCGAGACTGGAGACAGAGTCGAGTCTCATTCAGCGCCGTCATCATCAC----------------GAA---G-CAAACCAGTCCAGTCTTCGGGGATTTGCTGTTGCTTTT-GGC-----T----TTTC------------------------------G--CT-TAAGCTG-TCT-GTGGGTGCCGGCCGGCC
droPer2	scaffold_4:4111281-4111613 -		GCTCTG------CGCCGCCTGAA-CCGA----------GAGGATCGCCCGTATGCATGTCTTATAGGTAGGTAAATCAAGGCCC--GAATTGAGTTGTATAAAC--TCGAGATTGGCATTCGTT--CC----------------------------T-CCAAGATCAAGA---GC------------GGGAGGC-------C----TTTTCGCT---T----------------TTT---------------C--GGCTGCTCT-GAGAGGTCT-CTGAGACTCAGACAGGGAGGAACTGGAACTGAGACCGAGACCGAGACCGAGACTGGAGACAGAGTCGAGTCTCATTCAGCGCCGTCATCATCAC----------------GAA---G-CAAACCAGTCCAGTCTTCGGGGATTTGCTGTTGCTTTT-GGC-----T----TTTC------------------------------G--CT-TAAGCTG-TCT-GTGGGTGCCGGCCGGCC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GATCTG------GCCAG--AGGATCCGT----------GGATATCGA-CGTATGCATGTCTTATAGA-AGGTA----------C--GGATTGAGTTGTGCAAAC--ATCAAATTGGCATTCC----CCAAGCAGAAA-CA--AAAAC--A----AAG-TCAAGATCATGG------CGCGGA------------A---AGGGGATA--------TTTA----------------TT----------------T--GGGAGCTCTTAACTGGGCTT------------------------------G------------------------------------CGAGT-------------CATCGTCGA----------------AAA---CCGAAACCAGTTCAG-----------------TTGCTTTT-GGCCGCGTT----TGTT------------------------------GTTTT-TAGCCAG-TCC-GTGGGTGCCGGCCGGCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................ATATCGA-CGTATGCATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................ATATCGA-CGTATGCATGTCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATCTG------GCCAG--AGGATCCGT----------GG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................CTTATAGA-AGGTA----------C--GGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................GTCGA----------------AAA---CCGAAACCAGTTCAG-----------------T..........................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GGATCCGT----------GGATATCGA-CGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GTGCAAAC--ATCAAATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GATCTG------GCCAG--AGGATCCGT----------GGATATCGA-CGTATGCATGTCTTATAGA-AGGTA----------C--GGATTGAGTTGTGCAAAC--ATCAAATTGGCATTCC----CCATGCAGAAA-CA--AAAAC--A----AAG-TCAAGATCATGG------CGCGGA------------A---AGGGGATA--------TTTA----------------TT----------------T--GGGAGCTCTTAGATGGGCTT------------------------------G------------------------------------CGAGT-------------CATCGTCGC----------------AAA---CCGAAACCAGTTCAG-----------------TTGCTTTT-GGCCGCGTT----TGTT------------------------------GTTTT-TAGCCAG-TCC-GTGGGTGCCGGCCGGCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................ATGCATGTCTTATAGA-AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
...CTG------GCCAG--AGGATCCGT----------GG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
.........................................TATCGA-CGTATGCATGTCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	1	0	1	0
.ATCTG------GCCAG--AGGATCCGT----------GG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0
.ATCTG------GCCAG--AGGATCCGT----------GGATAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................GCTCTTAGATGGGCTT------------------------------G------------------------------------CGAGT-------------C.........................................................................................................................................................	23	1	1.00	1	1	0	0	0
........................................ATATCGA-CGTATGCATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
...................................................ATGCATGTCTTATAGA-AGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
............................................CGA-CGTATGCATGTCTTATAGA-AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
........................................ATATCGA-CGTATGCATGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...CTG------GCCAG--AGGATCCGT----------GGATAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
......................ATCCGT----------GGATATCGA-CGTATGCATGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
................................................CGTATGCATGTCTTATAGA-AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
........................................ATATCGA-CGTATGCATGTCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0

dm3

GATCTG------GCCAG--AGGATCCGT----------GGATATCGA-CGTATGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCAAAC--ATCAAATTGGCATTCC----CCAAGCAGAAA-CA--AAAAC--A----AAG-TCAAGATCATGG------CGCGGA------------A---AGGGGATA--------TTTA----------------TT----------------T--GGGAGCTCTTAACTGGGCTT------------------------------G------------------------------------CGAGT-------------CATCATCGA----------------AAA---CCGAAACCAGTTCAG-----------------TTGCTTTT-GGCCGCGTT----TGTT------------------------------GTTTT-TAGCCAG-TCC-GTGGGTGCCGGCCGGCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT-TAGCCAG-TCC-GTGGGTGC.........	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................G--AGGATCCGT----------GGATATCGA-CGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CTG------GCCAG--AGGATCCGT----------GGATAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TG------GCCAG--AGGATCCGT----------GGATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CATGG------CGCGGA------------A---AGGGGAT.....................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATCTG------GCCAG--AGGATCCGT----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0
....................................................................................................................................................................................GA------------A---AGGGGATA--------TTTA----------------TT----------------T--GGG................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................GGATCCGT----------GGATATCGA-CG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CAAGATCATGG------CGCGGA------------A---AGGGG.......................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GGTA----------C--GAATTGAGTTGTGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GT----------GGATATCGA-CGTATGCATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATCTG------GCCAG--AGGATCCGT----------GGATATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................ATCATGG------CGCGGA------------A---AGGGGATA--------TT..........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT------------------------------GTTTT-TAGCCAG-TCC-GTGGGT...........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................ATATCGA-CGTATGCATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GATCTG------GCCCG--AGGATCCGT----------GGATATCGA-CGCATGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCAAAC--ACCAAATTGCCATTCC----TCGAGCAGAAA-CA--AAAGC--A----AAG-TCAAGATCGTGG------CGCGGA------------A---AGGGGATA--------CTTA----------------TT----------------T--GGGAGCTCT----------G------------------------------G------------------------------------CGAGT-------------CATCATCGA----------------AAA---CGGAAACCAGTTCAG-----------------TTGCTTTT-GGCCGCGTT----TGTT------------------------------GTTTT-TAGCCAG-TCC-GTGGGTGCCGGCCGGCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................ATCCGT----------GGATATCGA-CGCATGCATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	1	1	0	0	2	0	0
.........................CGT----------GGATATCGA-CGCATGCATGTCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	0	0	1	0	0
.......................TCCGT----------GGATATCGA-CGCATGCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
.......................TCCGT----------GGATATCGA-CGCATGCATGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
......................ATCCGT----------GGATATCGA-CGCATGCATGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
......................ATCCGT----------GGATATCGA-CGCATGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
............................................................TTATAGA-AGGTA----------C--GAATTGAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.......................TCCGT----------GGATATCGA-CGCATGCATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
.ATCTG------GCCCG--AGGATCCGT----------GGATAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
......................................GGATATCGA-CGCATGCATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.....G------GCCCG--AGGATCCGT----------GGATATCGA-CGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.ATCTG------GCCCG--AGGATCCGT----------GG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................GT-------------CATCATCGA----------------AAA---CGGAAACCAGTT...............................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
......................ATCCGT----------GGATATCGA-CGCATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
........................CCGT----------GGATATCGA-CGCATGCATGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.........................CGT----------GGATATCGA-CGCATGCATGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.....................GATCCGT----------GGATATCGA-CGCATGCATGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	1	0	0
......................ATCCGT----------GGATATCGA-CGCATGCATGTCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0

droYak3

GATCTG------GCCAG--AGGATCCGT----------GGTTATCGA-CGTATGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCAAAC--ATCAAATTGGCATTCG----CCGAGCAGAAA-CG--AAAAC--A----AAG-TCAAGATCATGG------CGAGGC------------GGGGGGTGGA-A--------TTTA----------------TT----------------T--GGGAGCTCTTAACTGGGCTT------------------------------G------------------------------------CGAGT-------------CATCATCGA----------------AAA---CCGAAACCAGTTCAG-----------------TTGCTTTTCGGCCGCGTTTGTTTGTT------------------------------GTTTT-CAGCCAAGTCC-GTGGGTGCCGGCCGGCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................GTTATCGA-CGTATGCATGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
...................................................ATGCATGTCTTATAGA-AGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
......................................GGTTATCGA-CGTATGCATGTCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
......................................GGTTATCGA-CGTATGCATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...........................T----------GGTTATCGA-CGTATGCATGTCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................G--AGGATCCGT----------GGTTATCGA-CGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................ATCCGT----------GGTTATCGA-CGTATGCATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...CTG------GCCAG--AGGATCCGT----------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.ATCTG------GCCAG--AGGATCCGT----------GGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................TCCGT----------GGTTATCGA-CGTATGCATGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................T----------GGTTATCGA-CGTATGCATGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................CGT----------GGTTATCGA-CGTATGCATGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................ATGCATGTCTTATAGA-AGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.ATCTG------GCCAG--AGGATCCGT----------GGTTATCGA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..TCTG------GCCAG--AGGATCCGT----------GG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................GA-CGTATGCATGTCTTATAGA-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCGGCCGCGTTTGTTT....................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....G------GCCAG--AGGATCCGT----------GGTTATCGA-CGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................GTTATCGA-CGTATGCATGTCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..TCTG------GCCAG--AGGATCCGT----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.ATCTG------GCCAG--AGGATCCGT----------GG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............AG--AGGATCCGT----------GGTTATCGA-CGTATGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................GTATGCATGTCTTATAGA-AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................CATCATCGA----------------AAA---CCGAAACCAGTTCA.............................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................TTATAGA-AGGTA----------C--GAATTGAGTTGTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................GCTCTTAACTGGGCTT------------------------------G------------------------------------CGAGT-------------CATC......................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

GATCTG------GCCAGCGAGGATCCGA----------G--GATCGA-CGTCTGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCCAAC--ATCAAATTGGCATTCC----CCAA--------------AACT----AAAAG-TAAAGATCAAGGTGCGGGCGCGGG------------C---AGGGGATA----------------------------TT----------------T--TGGAGCTCTTAACTGGGCTT------------------------------G------------------------------------CGAGT-------------CATTGTTGA---GCTGA-G-AAAAAAAAGGCCCAAAACCAGTTCAG-----------------TTGCTTTT-GGCCGCGTT----TGTT------------------------------GTTTTCCAGCCAA-TCT-GTGGGTGCCGGCCGGCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCTCCG------GCCCG--AGGACTCGA----------G--GATCGA-CGTCTGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCACAC--ATCGAATTGGCATTTC----C----------------------A----AAG-TCAAGATCAAGG------CGAGGG------------C----GGGGATG--------ATT-----------------TT----------------C--GGGGGCTCTTAACTGGGC-T------------------------------G------------------------------------CGAGT-------------CATCGTCGC---GCCGA-GGAAAGAAAA---CCGAAACCAGTTCAG-----------------TTGCTTTT-GGCCGCGTT----TGTT------------------------------GTT-T-TAGCCAG-TCT-GTGGGTGCCGGCCGGCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCTCTG------GCCTG--AGGATCCGATTCCGCGTCCGAGGATCGA-CGTCTGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCAAAC--ATCCAATTGGCATTCC----CCAAACGAAAA-CAGAAAAACTGAAAAAAAG-TCAAGATCAAGG------CGAGGG------------C---AGGGGATA----------TA----------------TT----------------T--TGGTGCTCTTAACTGGGCCT------------------------------G------------------------------------CGAGT-------------CATCATCGC---GCAGAAAGAAAAAAAA---CGAAAACCAGTTCAG-----------------TTACTTTT-GGCCGCGTT----TGTT------------------------------GTTTT-TAGCCAG-TCT-GTGGGTGCCGGCCGGCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCTCTG------GCCAG--AGGATCCCA----------G--GATCGA-CGAATGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCCAAC--ATCAAATTGGCATTCC----CCAAAC-------------GC--A--GAAAG-TCAAGATCAAGG------CGCGGG------------C---AGGGGCTC--------TGTT----------------TT----------------T---GGGGCTCT-AACTGGGATT------------------------------G------------------------------------CGAGT-------------CATCATCGG---GCAG---------AAA---ACAAAACCAGTTCAG-----------------TTGCTTTT-GGCCGCGTT----TGTT------------------------------GTTTT-TAGCCAG-TTTCGTGGGTGCCGGCCGGCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCTCTG------GCCTG--AGGATCCGA----------G--GATCGA-CGAATGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTGCCAAC--ATTAAATTGGCATTTC----CTAAGCCCAAAACC-AAACCCT---AAAAAG-TCAAGATCAAGG------CGAGGG------------TGGGGGCA----GAGTTA--CTGT----------------TT----------------T--GGGGGCTCT-AACTGGGATT------------------------------G------------------------------------CGAGT-------------CATCATCGC---GCAG---------AAA---ATAAAACCAGTTCAG-----------------TTGCTTTC-GGCCGCGTC----TGTT------------------------------GTTTT-TAGCCAC-TCT-GTGGGTGCCGGCCGGCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCTCCC------AACTG--AGGATCCAA----------G--GATCGG-CGAATGCATGTCTTATAGA-AGGTA----------A--GGATTGAGTTGTGCAAAC--CCCAAATTGGCATTCC----CCGA----AAA-CC--CA--------AAAAGTTCAAGATC--------------------------------------------------TT----------------TT----------------T--CGGCGCTCT-AACTGGGAAT------------------------------G------------------------------------CGAGTCATTCGGCGGCATCGTCATCATTGTG---G-G--GAA-AAA--AC-CAAACCAGTTCAG-----------------TTGCTTTTCGGCCGAGTT----TGTTTTATTTTTTATTATTTTGCTCTCTTA---GCTTTT-TAGCCAG-TCT-GTGGGTGCCGGCCGGCT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCTCTGAAACTGGCCA---TTAA-CCGA----------G--GACGGATCGTATGCATGTCTTATAGA-AGGTA----------C--GAATTGAGTTGTACACACGCCTCGGATTGGCATTCC----CGAA---------------AC--A----TGG-TCAAGACCAAGC---CAGCGAGGC------------T-----GGGGTA--------T--T----------------TT----------------T--CGGCACTCT-AAGCGGGCATCGG---------------------------G------------------------------------AGAGTCATGCTGCGGCGTC-------------------------AA---G-CAAACCAGTTCAGA----------------TTGTGTGT-G----TGTC----TG-----------------------------------CT-TGGTGTG-TCT-GTGGGTGCCGGCCGGCT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCTCTG------ACTGGCCTGGA-CCTC----------G--GATCGATCGTATGCATGTCTTATAGA-AGGTAAGACAATC--CGAAAATTAAGTTGTGCGAGC-------------ATTCCCT--CCAAAAAGCAA-CA--CAAACTAAAAACCAT-TCAAGATCATGG------CAAGACATGT--------G---AGGGGTT----------TTATGTAGCTTGTATTTTTTTTTGGTTTTTTTTTTTTTGGGGGGGCTAT-AACTGGGCTT------------------------------G------------------------------------AGAGTCATTTGGCGGCGTCATCATCAC----------------GAA---G-CAAACTGGTTCGCATTCAGC----------TTGTTTCT-TGCCGT-------TGTC--------------------TTTTTGTG--TATTT-TAGCCAG-TCT-GTGGGTGCCGGCCGGCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................ATCGATCGTATGCATGTCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	1	0
....................GGA-CCTC----------G--GATCGATCGTATGCATGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	1	0	0	0	1	0
............................................................................................................................................................................................................T----------TTATGTAGCTTGTATTTTT........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...........................C----------G--GATCGATCGTATGCATGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................CTGGA-CCTC----------G--GATCGATCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.CTCTG------ACTGGCCTGGA-CCTC----------G--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
GCTCTG------ACTGGCCTGGA-CCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....................GGA-CCTC----------G--GATCGATCGTATGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...................TGGA-CCTC----------G--GATCGATCGTATGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
......................................G--GATCGATCGTATGCATGTCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.....................GA-CCTC----------G--GATCGATCGTATGCATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................ATGG------CAAGACATGT--------G---AGGGGTT----------TT.........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
GCTCTG------ACTGGCCTGGA-CCTC----------G--GATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...........................................TCGATCGTATGCATGTCTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................GA-CCTC----------G--GATCGATCGTATGCATGTCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0

droBip1

GCTCTG------ACTGGCCTGGATC-TC----------G--GATCGATCGTATGCATGTCTTATAGA-AGGTAAGACG--GTCCGAAAATTAAGTTGTGCGAGC-------------ATTCCCT--CCAAAAAATAACCA--AAAAC--AAAACCAT-TCAAGATCACGG------CAAGGCACACAGG----------GGGGCT-TTTTCTGT---T----------------TTTTTT----TGT-----G--GGGGGCTAT-AACTGGGCTT------------------------------G------------------------------------AGAGTCATTTGGCGGCGTCATCATCAC----------------GAA---G-CAAACTGGTTCGCTTTCAGC----------TTGTTTCT-TGCTGT-TT----TGTC--------------------GTTTTGTGTGGGTTT-TAGCCAG-TCT-GTGGGTGCCGGCCGGCT	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCTCTG------CGCCGCCTGAA-CCGA----------GAGGATCGCCCGTATGCATGTCTTATAGGTAGGTAAATCAAGGCCC--GAATTGAGTTGTATAAAC--ACGAGATTGGCATTCGTTCCTC-------------------------------CAACATCAAGA---GC------------GGGAGGC-------C----TTTTCGCT---T----------------TTT---------------C--GGCTGCTCT-GAGAGGTCT-CTGAGACTCAGACAGGGAGGAACTGGAACTGAGACCGA-ACCGAGACCGAGACTGGAGACAGAGTCGAGTCTCATTCAGCGCCGTCATCATCAC----------------GAA---G-CAAACCAGTCCAGTCTTCGGGGATTTGCTGTTGCTTTT-GGC-----T----TTTC------------------------------G--CT-TAAGCTG-TCT-GTGGGTGCCGGCCGGCC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...CTG------CGCCGCCTGAA-CCGA----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	5	0	0	0	0	0	0	0	0
....................GAA-CCGA----------GAGGATCGCCCGTATGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0
...CTG------CGCCGCCTGAA-CCGA----------GAGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...CTG------CGCCGCCTGAA-CCGA----------GAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................ACTGGAACTGAGACCGA-AC......................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................A----------GAGGATCGCCCGTATGCATGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..TCTG------CGCCGCCTGAA-CCGA----------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................GAGGATCGCCCGTATGCATGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............CGCCTGAA-CCGA----------GAGGATCGCCCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................GA----------GAGGATCGCCCGTATGCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................GAGGATCGCCCGTATGCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................GA----------GAGGATCGCCCGTATGCATGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............CGCCTGAA-CCGA----------GAGGATCGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..TCTG------CGCCGCCTGAA-CCGA----------GA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................GAA-CCGA----------GAGGATCGCCCGTATGCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...CTG------CGCCGCCTGAA-CCGA----------GA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................AGGATCGCCCGTATGCATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................GAGGATCGCCCGTATGCATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGGGGATTTGCTGTTGCT......................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................GA----------GAGGATCGCCCGTATGCATGTCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

GCTCTG------CGCCGCCTGAA-CCGA----------GAGGATCGCCCGTATGCATGTCTTATAGGTAGGTAAATCAAGGCCC--GAATTGAGTTGTATAAAC--TCGAGATTGGCATTCGTT--CC----------------------------T-CCAAGATCAAGA---GC------------GGGAGGC-------C----TTTTCGCT---T----------------TTT---------------C--GGCTGCTCT-GAGAGGTCT-CTGAGACTCAGACAGGGAGGAACTGGAACTGAGACCGAGACCGAGACCGAGACTGGAGACAGAGTCGAGTCTCATTCAGCGCCGTCATCATCAC----------------GAA---G-CAAACCAGTCCAGTCTTCGGGGATTTGCTGTTGCTTTT-GGC-----T----TTTC------------------------------G--CT-TAAGCTG-TCT-GTGGGTGCCGGCCGGCC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................GA----------GAGGATCGCCCGTATGCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	4	0	0	0	0	0
..............CCGCCTGAA-CCGA----------GAGGATCGCCCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
...CTG------CGCCGCCTGAA-CCGA----------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
..........................GA----------GAGGATCGCCCGTATGCATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
....................GAA-CCGA----------GAGGATCGCCCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
......................................GAGGATCGCCCGTATGCATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
................................................................................................GTATAAAC--TCGAGATTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
...CTG------CGCCGCCTGAA-CCGA----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
..TCTG------CGCCGCCTGAA-CCGA----------GAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
...CTG------CGCCGCCTGAA-CCGA----------GAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................GAGGATCGCCCGTATGCATGTCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTGCTTTT-GGC-----T----TT...................................................................	21	1	1.00	1	0	1	0	0	0	0
......................................GAGGATCGCCCGTATGCATGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..................................................................GTAGGTAAATCAAGGCCC--GAATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GACCGAGACCGAGACTGGA......................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
GCTCTG------CGCCGCCTGAA-CCGA----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTC------------------------------G--CT-TAAGCTG-TCT-GTG..............	20	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................AACTGGAACTGAGACCGAGACCGAGA.................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................AGACAGGGAGGAACTGGAACTGAGACC...........................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GACCGAGACCGAGACTGGAGACA..................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................C--TCGAGATTGGCATTCGTT--CC----------------------------T-CC..................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................................GAGGATCGCCCGTATGCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................TTT---------------C--GGCTGCTCT-GAGAGGTCT-CT.............................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
....................GAA-CCGA----------GAGGATCGCCCGTATGCATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..............CCGCCTGAA-CCGA----------GAGGATCGCCCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
......................................GAGGATCGCCCGTATGCATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................GAGGATCGCCCGTATGCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.CTCTG------CGCCGCCTGAA-CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
GCTCTG------CGCCGCCTGAA-CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CTGAGACCGAGACCGAGA.................................................................................................................................................................................................	18	11	0.09	1	1	0	0	0	0	0

dsi_1811

2r:18733149-18733298 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-27.3	-27.1	-26.9